Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:30:53 (2119653): wrapper (7.7.26015): starting
04:30:53 (2119653): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 04:30:53] Arguments: --nthreads 8
[2025-11-25 04:30:53] Threads: 8
[2025-11-25 04:30:53] Checking for CVMFS
[2025-11-25 04:30:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:30:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:30:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:30:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:30:53] 2.13.3.0 13693 28430 348980 153277 1 152 35419784 40960000 23532 16776704 0 78919252 99.604 84572691 37481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 04:30:53] CVMFS is ok
[2025-11-25 04:30:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:30:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:30:53] Further information can be found at the LHC@home message board.
[2025-11-25 04:30:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:30:53] Checking for apptainer binary...
[2025-11-25 04:30:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:30:53] Running /usr/bin/apptainer --version
[2025-11-25 04:30:53] apptainer version 1.4.4-1.el9
[2025-11-25 04:30:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:30:54] c6-5-37-3.aglt2.org
[2025-11-25 04:30:54] apptainer works
[2025-11-25 04:30:54] Set ATHENA_PROC_NUMBER=8
[2025-11-25 04:30:54] Set ATHENA_CORE_NUMBER=8
[2025-11-25 04:30:54] Starting ATLAS job with PandaID=6895386414
[2025-11-25 04:30:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 14:39:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 14:39:20] 2025-11-25 19:38:26,431 | INFO     | time since job start (36436s) is within the limit (172800.0s)
[2025-11-25 14:39:20] 2025-11-25 19:38:26,975 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 14:39:20] 2025-11-25 19:38:26,982 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2967.428982142857
[2025-11-25 14:39:20] 2025-11-25 19:38:26,991 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895386414/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 14:39:20] 2025-11-25 19:38:26,991 | INFO     | extracted standard info from prmon json
[2025-11-25 14:39:20] 2025-11-25 19:38:26,991 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 14:39:20] 2025-11-25 19:38:26,991 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 14:39:20] 2025-11-25 19:38:27,000 | INFO     | fitting pss+swap vs Time
[2025-11-25 14:39:20] 2025-11-25 19:38:27,001 | INFO     | sum of square deviations: 65967427033.289764
[2025-11-25 14:39:20] 2025-11-25 19:38:27,007 | INFO     | sum of deviations: 678162512693.377
[2025-11-25 14:39:20] 2025-11-25 19:38:27,007 | INFO     | mean x: 1764081280.641541
[2025-11-25 14:39:20] 2025-11-25 19:38:27,007 | INFO     | mean y: 2908487.0251256283
[2025-11-25 14:39:20] 2025-11-25 19:38:27,007 | INFO     | intersect: -18132311388.558327
[2025-11-25 14:39:20] 2025-11-25 19:38:27,008 | INFO     | chi2: 5.88754386134812
[2025-11-25 14:39:20] 2025-11-25 19:38:27,009 | INFO     | sum of square deviations: 64323825329.70299
[2025-11-25 14:39:20] 2025-11-25 19:38:27,014 | INFO     | sum of deviations: 845249871572.506
[2025-11-25 14:39:20] 2025-11-25 19:38:27,015 | INFO     | mean x: 1764081128.1554055
[2025-11-25 14:39:20] 2025-11-25 19:38:27,015 | INFO     | mean y: 2923979.2010135134
[2025-11-25 14:39:20] 2025-11-25 19:38:27,015 | INFO     | intersect: -23178056619.72947
[2025-11-25 14:39:20] 2025-11-25 19:38:27,016 | INFO     | chi2: 3.661342081037211
[2025-11-25 14:39:20] 2025-11-25 19:38:27,016 | INFO     | current chi2=3.661342081037211 (change=37.81206276739579 %)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,016 | INFO     | sum of square deviations: 62707614951.212746
[2025-11-25 14:39:20] 2025-11-25 19:38:27,022 | INFO     | sum of deviations: 882985036166.0654
[2025-11-25 14:39:20] 2025-11-25 19:38:27,023 | INFO     | mean x: 1764080975.6626916
[2025-11-25 14:39:20] 2025-11-25 19:38:27,023 | INFO     | mean y: 2927519.3134582625
[2025-11-25 14:39:20] 2025-11-25 19:38:27,023 | INFO     | intersect: -24837071662.719936
[2025-11-25 14:39:20] 2025-11-25 19:38:27,023 | INFO     | chi2: 3.308785204812517
[2025-11-25 14:39:20] 2025-11-25 19:38:27,024 | INFO     | current chi2=3.308785204812517 (change=9.629170627094728 %)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,024 | INFO     | right removable region: 586
[2025-11-25 14:39:20] 2025-11-25 19:38:27,024 | INFO     | sum of square deviations: 64323227529.70291
[2025-11-25 14:39:20] 2025-11-25 19:38:27,030 | INFO     | sum of deviations: 481730565838.1016
[2025-11-25 14:39:20] 2025-11-25 19:38:27,030 | INFO     | mean x: 1764081433.1554055
[2025-11-25 14:39:20] 2025-11-25 19:38:27,030 | INFO     | mean y: 2926691.6402027025
[2025-11-25 14:39:20] 2025-11-25 19:38:27,031 | INFO     | intersect: -13208660780.179678
[2025-11-25 14:39:20] 2025-11-25 19:38:27,031 | INFO     | chi2: 3.0966830884316896
[2025-11-25 14:39:20] 2025-11-25 19:38:27,031 | INFO     | current chi2=3.0966830884316896 (change=47.40280223198853 %)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,032 | INFO     | sum of square deviations: 62706599540.22126
[2025-11-25 14:39:20] 2025-11-25 19:38:27,038 | INFO     | sum of deviations: 408585358984.02386
[2025-11-25 14:39:20] 2025-11-25 19:38:27,038 | INFO     | mean x: 1764081585.6678023
[2025-11-25 14:39:20] 2025-11-25 19:38:27,038 | INFO     | mean y: 2933573.964224872
[2025-11-25 14:39:20] 2025-11-25 19:38:27,038 | INFO     | intersect: -11491516982.150906
[2025-11-25 14:39:20] 2025-11-25 19:38:27,039 | INFO     | chi2: 2.660714136426733
[2025-11-25 14:39:20] 2025-11-25 19:38:27,039 | INFO     | current chi2=2.660714136426733 (change=14.078578257930563 %)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,039 | INFO     | left removable region: 20
[2025-11-25 14:39:20] 2025-11-25 19:38:27,040 | INFO     | sum of square deviations: 56213435378.55814
[2025-11-25 14:39:20] 2025-11-25 19:38:27,045 | INFO     | sum of deviations: 575834893602.6077
[2025-11-25 14:39:20] 2025-11-25 19:38:27,046 | INFO     | mean x: 1764081555.2120142
[2025-11-25 14:39:20] 2025-11-25 19:38:27,046 | INFO     | mean y: 2956460.0282685515
[2025-11-25 14:39:20] 2025-11-25 19:38:27,046 | INFO     | intersect: -18067807367.355667
[2025-11-25 14:39:20] 2025-11-25 19:38:27,046 | INFO     | chi2: 0.04368674677669767
[2025-11-25 14:39:20] 2025-11-25 19:38:27,047 | INFO     | current memory leak: 10.24 B/s (using 566 data points, chi2=0.04)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,047 | INFO     | could have reported an average CPU frequency of 2990 MHz (23 samples)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,047 | INFO     | ..............................
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . Timing measurements:
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . get job = 0 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . initial setup = 3 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . payload setup = 7 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . stage-in = 0 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . payload execution = 36399 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . stage-out = 3 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | . log creation = 0 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,048 | INFO     | ..............................
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | 
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | job summary report
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | --------------------------------------------------
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | PanDA job id: 6895386414
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | task id: 47556149
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | errors: (none)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | pilot state: finished 
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | transexitcode: 0
[2025-11-25 14:39:20] 2025-11-25 19:38:27,116 | INFO     | exeerrorcode: 0
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | exeerrordiag: 
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | exitcode: 0
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | exitmsg: OK
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | cpuconsumptiontime: 226431 s
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | nevents: 1000
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | neventsw: 0
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | pid: 2130241
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | pgrp: 2130241
[2025-11-25 14:39:20] 2025-11-25 19:38:27,117 | INFO     | corecount: 8
[2025-11-25 14:39:20] 2025-11-25 19:38:27,118 | INFO     | event service: False
[2025-11-25 14:39:20] 2025-11-25 19:38:27,118 | INFO     | sizes: {0: 2284315, 1: 2284343, 8: 2284605, 11: 2284633, 36411: 2327355, 36415: 2336349, 36416: 2336533, 36421: 2336779}
[2025-11-25 14:39:20] 2025-11-25 19:38:27,118 | INFO     | --------------------------------------------------
[2025-11-25 14:39:20] 2025-11-25 19:38:27,118 | INFO     | 
[2025-11-25 14:39:20] 2025-11-25 19:38:27,119 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 14:39:20] 2025-11-25 19:38:27,162 | INFO     | job 6895386414 has completed (purged errors)
[2025-11-25 14:39:20] 2025-11-25 19:38:27,163 | INFO     | overall cleanup function is called
[2025-11-25 14:39:20] 2025-11-25 19:38:28,178 | INFO     | --- collectZombieJob: --- 10, [2130241]
[2025-11-25 14:39:20] 2025-11-25 19:38:28,178 | INFO     | zombie collector waiting for pid 2130241
[2025-11-25 14:39:20] 2025-11-25 19:38:28,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 14:39:20] 2025-11-25 19:38:28,178 | INFO     | collected zombie processes
[2025-11-25 14:39:20] 2025-11-25 19:38:28,179 | INFO     | will attempt to kill all subprocesses of pid=2130241
[2025-11-25 14:39:20] 2025-11-25 19:38:28,721 | INFO     | process IDs to be killed: [2130241] (in reverse order)
[2025-11-25 14:39:20] 2025-11-25 19:38:28,879 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 14:39:20] 2025-11-25 19:38:28,880 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 14:39:20] 2025-11-25 19:38:28,904 | INFO     | did not find any defunct processes belonging to 2130241
[2025-11-25 14:39:20] 2025-11-25 19:38:28,949 | INFO     | did not find any defunct processes belonging to 2130241
[2025-11-25 14:39:20] 2025-11-25 19:38:28,951 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 14:39:20] 2025-11-25 19:38:28,951 | INFO     | ready for new job
[2025-11-25 14:39:20] 2025-11-25 19:38:28,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 14:39:20] 2025-11-25 19:38:28,955 | INFO     | ***************************************
[2025-11-25 14:39:20] 2025-11-25 19:38:28,955 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 14:39:20] 2025-11-25 19:38:28,955 | INFO     | ***************************************
[2025-11-25 14:39:20] 2025-11-25 19:38:28,955 | INFO     | 
[2025-11-25 14:39:20] 2025-11-25 19:38:28,958 | INFO     | architecture information:
[2025-11-25 14:39:20] 2025-11-25 19:38:28,959 | INFO     | executing command: cat /etc/os-release
[2025-11-25 14:39:20] 2025-11-25 19:38:28,982 | INFO     | cat /etc/os-release:
[2025-11-25 14:39:20] NAME="CentOS Linux"
[2025-11-25 14:39:20] VERSION="7 (Core)"
[2025-11-25 14:39:20] ID="centos"
[2025-11-25 14:39:20] ID_LIKE="rhel fedora"
[2025-11-25 14:39:20] VERSION_ID="7"
[2025-11-25 14:39:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 14:39:20] ANSI_COLOR="0;31"
[2025-11-25 14:39:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 14:39:20] HOME_URL="https://www.centos.org/"
[2025-11-25 14:39:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 14:39:20] 
[2025-11-25 14:39:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 14:39:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 14:39:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 14:39:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 14:39:20] 
[2025-11-25 14:39:20] 2025-11-25 19:38:28,983 | INFO     | ***************************************
[2025-11-25 14:39:20] 2025-11-25 19:38:29,486 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 14:39:20] 2025-11-25 19:38:29,587 | INFO     | sufficient remaining disk space (70866960384 B)
[2025-11-25 14:39:20] 2025-11-25 19:38:29,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 14:39:20] 2025-11-25 19:38:29,587 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 14:39:20] 2025-11-25 19:38:29,587 | INFO     | update_server=False
[2025-11-25 14:39:20] 2025-11-25 19:38:29,588 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 14:39:20] 2025-11-25 19:38:29,588 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 14:39:20] 2025-11-25 19:38:29,792 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 14:39:20] 2025-11-25 19:38:29,792 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 14:39:20] 2025-11-25 19:38:29,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:39:20] 2025-11-25 19:38:29,793 | INFO     | will abort loop
[2025-11-25 14:39:20] 2025-11-25 19:38:30,375 | INFO     | all data control threads have been joined
[2025-11-25 14:39:20] 2025-11-25 19:38:30,570 | INFO     | all job control threads have been joined
[2025-11-25 14:39:20] 2025-11-25 19:38:30,596 | INFO     | [job] retrieve thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:30,798 | INFO     | [job] job monitor thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:30,843 | INFO     | [payload] validate_post thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:30,850 | INFO     | all payload control threads have been joined
[2025-11-25 14:39:20] 2025-11-25 19:38:31,102 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,239 | INFO     | [data] copytool_in thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,273 | INFO     | [job] validate thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,287 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,366 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,381 | INFO     | [data] control thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,490 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,576 | INFO     | [job] control thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,595 | INFO     | [data] copytool_out thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:31,858 | INFO     | [payload] control thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:32,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 14:39:20] 2025-11-25 19:38:32,199 | INFO     | [payload] failed_post thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:32,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 14:39:20] 2025-11-25 19:38:33,160 | INFO     | [job] queue monitor thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:38:36,234 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 14:39:20] 2025-11-25 19:39:00,030 | INFO     | PID=2123889 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 14:39:20] 2025-11-25 19:39:00,030 | INFO     | .. there are 31 such processes running
[2025-11-25 14:39:20] 2025-11-25 19:39:00,030 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 14:39:20] 2025-11-25 19:39:00,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 14:39:20] 2025-11-25 19:39:00,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 14:39:20] 2025-11-25 19:39:13,015 | INFO     | [monitor] cgroup control has ended
[2025-11-25 14:39:20] 2025-11-25 19:39:14,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140083473545024)>', '<ExcThread(monitor, started 140082698774272)>']
[2025-11-25 14:39:20] 2025-11-25 19:39:15,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 14:39:20] 2025-11-25 19:39:15,130 | INFO     | [monitor] control thread has ended
[2025-11-25 14:39:20] 2025-11-25 19:39:19,961 | INFO     | all workflow threads have been joined
[2025-11-25 14:39:20] 2025-11-25 19:39:19,962 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 14:39:20] 2025-11-25 19:39:19,962 | INFO     | traces error code: 0
[2025-11-25 14:39:20] 2025-11-25 19:39:19,962 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 14:39:20] 2025-11-25 19:39:20,130 [wrapper] ==== pilot stdout END ====
[2025-11-25 14:39:20] 2025-11-25 19:39:20,133 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 14:39:20] 2025-11-25 19:39:20,136 [wrapper] pilotpid: 2123889
[2025-11-25 14:39:20] 2025-11-25 19:39:20,139 [wrapper] Pilot exit status: 0
[2025-11-25 14:39:20] 2025-11-25 19:39:20,151 [wrapper] pandaids: 6895386414
[2025-11-25 14:39:20] 2025-11-25 19:39:20,233 [wrapper] cleanup supervisor_pilot 3899439 2123890
[2025-11-25 14:39:20] 2025-11-25 19:39:20,236 [wrapper] Test setup, not cleaning
[2025-11-25 14:39:20] 2025-11-25 19:39:20,243 [wrapper] apfmon messages muted
[2025-11-25 14:39:20] 2025-11-25 19:39:20,245 [wrapper] ==== wrapper stdout END ====
[2025-11-25 14:39:20] 2025-11-25 19:39:20,248 [wrapper] ==== wrapper stderr END ====
[2025-11-25 14:39:20]  *** Error codes and diagnostics ***
[2025-11-25 14:39:20]     "exeErrorCode": 0,
[2025-11-25 14:39:20]     "exeErrorDiag": "",
[2025-11-25 14:39:20]     "pilotErrorCode": 0,
[2025-11-25 14:39:20]     "pilotErrorDiag": "",
[2025-11-25 14:39:20]  *** Listing of results directory ***
[2025-11-25 14:39:20] total 1305952
[2025-11-25 14:39:20] -rwx------. 1 boincer umatlas     36292 Nov 24 00:14 runpilot2-wrapper.sh
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:14 queuedata.json
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 00:14 pilot3.tar.gz
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas       100 Nov 25 04:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 14:39:20] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 04:30 run_atlas
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas       105 Nov 25 04:30 job.xml
[2025-11-25 14:39:20] -rw-r--r--. 2 boincer umatlas 409594712 Nov 25 04:30 EVNT.47483658._001240.pool.root.1
[2025-11-25 14:39:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 04:30 start_atlas.sh
[2025-11-25 14:39:20] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 04:30 shared
[2025-11-25 14:39:20] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 04:30 input.tar.gz
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas         0 Nov 25 04:30 boinc_lockfile
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 04:30 pandaJob.out
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas        57 Nov 25 04:30 setup.sh.local
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas    991894 Nov 25 04:31 agis_schedconf.cvmfs.json
[2025-11-25 14:39:20] drwx------. 5 boincer umatlas      4096 Nov 25 04:31 pilot3
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas       533 Nov 25 14:29 boinc_task_state.xml
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas      6846 Nov 25 14:30 init_data.xml
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas 910055021 Nov 25 14:37 HITS.47556149._002267.pool.root.1
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas      1056 Nov 25 14:38 memory_monitor_summary.json
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas   1516240 Nov 25 14:38 agis_ddmendpoints.agis.ALL.json
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas   1877493 Nov 25 14:38 log.47556149._002267.job.log.tgz.1
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas        95 Nov 25 14:38 pilot_heartbeat.json
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas      8617 Nov 25 14:38 heartbeat.json
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 14:39 boinc_mmap_file
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas        29 Nov 25 14:39 wrapper_checkpoint.txt
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas      5010 Nov 25 14:39 pilotlog.txt
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas   4983545 Nov 25 14:39 log.47556149._002267.job.log.1
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas       353 Nov 25 14:39 output.list
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas       620 Nov 25 14:39 runtime_log
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas   6881280 Nov 25 14:39 result.tar.gz
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 14:39 runtime_log.err
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas       662 Nov 25 14:39 OMrMDmn5dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6vIKDmu9qDPn.diag
[2025-11-25 14:39:20] -rw-r--r--. 1 boincer umatlas     21312 Nov 25 14:39 stderr.txt
[2025-11-25 14:39:20] HITS file was successfully produced:
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas 910055021 Nov 25 14:37 shared/HITS.pool.root.1
[2025-11-25 14:39:20]  *** Contents of shared directory: ***
[2025-11-25 14:39:20] total 1296048
[2025-11-25 14:39:20] -rw-r--r--. 2 boincer umatlas 409594712 Nov 25 04:30 ATLAS.root_0
[2025-11-25 14:39:20] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 04:30 start_atlas.sh
[2025-11-25 14:39:20] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 04:30 input.tar.gz
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas 910055021 Nov 25 14:37 HITS.pool.root.1
[2025-11-25 14:39:20] -rw-------. 1 boincer umatlas   6881280 Nov 25 14:39 result.tar.gz
14:39:21 (2119653): run_atlas exited; CPU time 227188.715808
14:39:21 (2119653): called boinc_finish(0)

</stderr_txt>
]]>

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