Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:43 (3823219): wrapper (7.7.26015): starting
00:01:43 (3823219): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:01:43] Arguments: --nthreads 9
[2025-11-25 00:01:43] Threads: 9
[2025-11-25 00:01:43] Checking for CVMFS
[2025-11-25 00:01:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:44] 2.13.3.0 11066 28165 345092 153270 0 583 22948931 32935936 21564 16776704 0 78890661 99.439 110834581 38786 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:01:44] CVMFS is ok
[2025-11-25 00:01:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:44] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:44] Checking for apptainer binary...
[2025-11-25 00:01:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:44] Running /usr/bin/apptainer --version
[2025-11-25 00:01:44] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:45] c6-1-24-4.aglt2.org
[2025-11-25 00:01:45] apptainer works
[2025-11-25 00:01:45] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:01:45] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:01:45] Starting ATLAS job with PandaID=6895385425
[2025-11-25 00:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:44:59]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:45:00] 2025-11-26 04:44:24,109 | INFO     | time since job start (85334s) is within the limit (172800.0s)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,558 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 23:45:00] 2025-11-26 04:44:24,562 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2957.132517857143
[2025-11-25 23:45:00] 2025-11-26 04:44:24,571 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895385425/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,572 | INFO     | extracted standard info from prmon json
[2025-11-25 23:45:00] 2025-11-26 04:44:24,573 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:45:00] 2025-11-26 04:44:24,573 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:45:00] 2025-11-26 04:44:24,594 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:45:00] 2025-11-26 04:44:24,596 | INFO     | sum of square deviations: 847138754171.9149
[2025-11-25 23:45:00] 2025-11-26 04:44:24,629 | INFO     | sum of deviations: 6376247853891.297
[2025-11-25 23:45:00] 2025-11-26 04:44:24,629 | INFO     | mean x: 1764089607.972103
[2025-11-25 23:45:00] 2025-11-26 04:44:24,630 | INFO     | mean y: 3058759.648783977
[2025-11-25 23:45:00] 2025-11-26 04:44:24,630 | INFO     | intersect: -13274898979.280703
[2025-11-25 23:45:00] 2025-11-26 04:44:24,631 | INFO     | chi2: 7.423534901880471
[2025-11-25 23:45:00] 2025-11-26 04:44:24,633 | INFO     | sum of square deviations: 838083567024.219
[2025-11-25 23:45:00] 2025-11-26 04:44:24,666 | INFO     | sum of deviations: 6856524403263.574
[2025-11-25 23:45:00] 2025-11-26 04:44:24,666 | INFO     | mean x: 1764089455.495334
[2025-11-25 23:45:00] 2025-11-26 04:44:24,666 | INFO     | mean y: 3066843.7817659727
[2025-11-25 23:45:00] 2025-11-26 04:44:24,666 | INFO     | intersect: -14429291547.507595
[2025-11-25 23:45:00] 2025-11-26 04:44:24,668 | INFO     | chi2: 4.320282175050984
[2025-11-25 23:45:00] 2025-11-26 04:44:24,668 | INFO     | current chi2=4.320282175050984 (change=41.8028980512154 %)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,669 | INFO     | sum of square deviations: 829093171787.5116
[2025-11-25 23:45:00] 2025-11-26 04:44:24,704 | INFO     | sum of deviations: 6963307031584.084
[2025-11-25 23:45:00] 2025-11-26 04:44:24,704 | INFO     | mean x: 1764089303.018732
[2025-11-25 23:45:00] 2025-11-26 04:44:24,704 | INFO     | mean y: 3068651.112391931
[2025-11-25 23:45:00] 2025-11-26 04:44:24,705 | INFO     | intersect: -14812992879.78735
[2025-11-25 23:45:00] 2025-11-26 04:44:24,706 | INFO     | chi2: 3.899754786354268
[2025-11-25 23:45:00] 2025-11-26 04:44:24,706 | INFO     | current chi2=3.899754786354268 (change=9.73379449900754 %)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,706 | INFO     | right removable region: 1387
[2025-11-25 23:45:00] 2025-11-26 04:44:24,708 | INFO     | sum of square deviations: 838078047744.2192
[2025-11-25 23:45:00] 2025-11-26 04:44:24,740 | INFO     | sum of deviations: 5868212523264.66
[2025-11-25 23:45:00] 2025-11-26 04:44:24,741 | INFO     | mean x: 1764089760.495334
[2025-11-25 23:45:00] 2025-11-26 04:44:24,741 | INFO     | mean y: 3067309.023689878
[2025-11-25 23:45:00] 2025-11-26 04:44:24,741 | INFO     | intersect: -12349068214.112112
[2025-11-25 23:45:00] 2025-11-26 04:44:24,742 | INFO     | chi2: 4.485682157400026
[2025-11-25 23:45:00] 2025-11-26 04:44:24,743 | INFO     | current chi2=4.485682157400026 (change=39.57484922359901 %)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,744 | INFO     | sum of square deviations: 829082981587.8168
[2025-11-25 23:45:00] 2025-11-26 04:44:24,777 | INFO     | sum of deviations: 5626147989749.548
[2025-11-25 23:45:00] 2025-11-26 04:44:24,777 | INFO     | mean x: 1764089913.0115273
[2025-11-25 23:45:00] 2025-11-26 04:44:24,777 | INFO     | mean y: 3071410.1534582134
[2025-11-25 23:45:00] 2025-11-26 04:44:24,777 | INFO     | intersect: -11968023327.335127
[2025-11-25 23:45:00] 2025-11-26 04:44:24,779 | INFO     | chi2: 3.8832212470693745
[2025-11-25 23:45:00] 2025-11-26 04:44:24,779 | INFO     | current chi2=3.8832212470693745 (change=13.430753432602716 %)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,779 | INFO     | left removable region: 20
[2025-11-25 23:45:00] 2025-11-26 04:44:24,780 | INFO     | sum of square deviations: 792016913312.4103
[2025-11-25 23:45:00] 2025-11-26 04:44:24,824 | INFO     | sum of deviations: 5938577075779.032
[2025-11-25 23:45:00] 2025-11-26 04:44:24,824 | INFO     | mean x: 1764089882.5910754
[2025-11-25 23:45:00] 2025-11-26 04:44:24,824 | INFO     | mean y: 3085867.658376006
[2025-11-25 23:45:00] 2025-11-26 04:44:24,825 | INFO     | intersect: -13224136380.102846
[2025-11-25 23:45:00] 2025-11-26 04:44:24,826 | INFO     | chi2: 0.2036487842141695
[2025-11-25 23:45:00] 2025-11-26 04:44:24,830 | INFO     | current memory leak: 7.50 B/s (using 1367 data points, chi2=0.20)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,832 | INFO     | could have reported an average CPU frequency of 2937 MHz (50 samples)
[2025-11-25 23:45:00] 2025-11-26 04:44:24,832 | INFO     | ..............................
[2025-11-25 23:45:00] 2025-11-26 04:44:24,832 | INFO     | . Timing measurements:
[2025-11-25 23:45:00] 2025-11-26 04:44:24,832 | INFO     | . get job = 0 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,832 | INFO     | . initial setup = 3 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,833 | INFO     | . payload setup = 16 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,833 | INFO     | . stage-in = 0 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,833 | INFO     | . payload execution = 85255 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,833 | INFO     | . stage-out = 4 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,833 | INFO     | . log creation = 1 s
[2025-11-25 23:45:00] 2025-11-26 04:44:24,833 | INFO     | ..............................
[2025-11-25 23:45:00] 2025-11-26 04:44:25,319 | INFO     | 
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | job summary report
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | --------------------------------------------------
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | PanDA job id: 6895385425
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | task id: 47556149
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | errors: (none)
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | pilot state: finished 
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | transexitcode: 0
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | exeerrorcode: 0
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | exeerrordiag: 
[2025-11-25 23:45:00] 2025-11-26 04:44:25,320 | INFO     | exitcode: 0
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | exitmsg: OK
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | cpuconsumptiontime: 246426 s
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | nevents: 1000
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | neventsw: 0
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | pid: 3854839
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | pgrp: 3854839
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | corecount: 9
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | event service: False
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 13: 2284366, 14: 2284684, 24: 2284712, 85275: 2348474, 85280: 2357529, 85302: 2357719}
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | --------------------------------------------------
[2025-11-25 23:45:00] 2025-11-26 04:44:25,321 | INFO     | 
[2025-11-25 23:45:00] 2025-11-26 04:44:25,322 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 23:45:00] 2025-11-26 04:44:25,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,374 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,375 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:45:00] 2025-11-26 04:44:25,376 | INFO     | job 6895385425 has completed (purged errors)
[2025-11-25 23:45:00] 2025-11-26 04:44:25,376 | INFO     | overall cleanup function is called
[2025-11-25 23:45:00] 2025-11-26 04:44:26,188 | INFO     | PID=3833831 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:45:00] 2025-11-26 04:44:26,188 | INFO     | .. there are 32 such processes running
[2025-11-25 23:45:00] 2025-11-26 04:44:26,426 | INFO     | --- collectZombieJob: --- 10, [3854839]
[2025-11-25 23:45:00] 2025-11-26 04:44:26,426 | INFO     | zombie collector waiting for pid 3854839
[2025-11-25 23:45:00] 2025-11-26 04:44:26,427 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:45:00] 2025-11-26 04:44:26,427 | INFO     | collected zombie processes
[2025-11-25 23:45:00] 2025-11-26 04:44:26,427 | INFO     | will attempt to kill all subprocesses of pid=3854839
[2025-11-25 23:45:00] 2025-11-26 04:44:27,246 | INFO     | process IDs to be killed: [3854839] (in reverse order)
[2025-11-25 23:45:00] 2025-11-26 04:44:27,474 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:45:00] 2025-11-26 04:44:27,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:45:00] 2025-11-26 04:44:27,488 | INFO     | did not find any defunct processes belonging to 3854839
[2025-11-25 23:45:00] 2025-11-26 04:44:27,516 | INFO     | did not find any defunct processes belonging to 3854839
[2025-11-25 23:45:00] 2025-11-26 04:44:27,517 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:45:00] 2025-11-26 04:44:27,517 | INFO     | ready for new job
[2025-11-25 23:45:00] 2025-11-26 04:44:27,518 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:45:00] 2025-11-26 04:44:27,524 | INFO     | ***************************************
[2025-11-25 23:45:00] 2025-11-26 04:44:27,524 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:45:00] 2025-11-26 04:44:27,524 | INFO     | ***************************************
[2025-11-25 23:45:00] 2025-11-26 04:44:27,524 | INFO     | 
[2025-11-25 23:45:00] 2025-11-26 04:44:27,527 | INFO     | architecture information:
[2025-11-25 23:45:00] 2025-11-26 04:44:27,531 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:45:00] 2025-11-26 04:44:27,588 | INFO     | cat /etc/os-release:
[2025-11-25 23:45:00] NAME="CentOS Linux"
[2025-11-25 23:45:00] VERSION="7 (Core)"
[2025-11-25 23:45:00] ID="centos"
[2025-11-25 23:45:00] ID_LIKE="rhel fedora"
[2025-11-25 23:45:00] VERSION_ID="7"
[2025-11-25 23:45:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:45:00] ANSI_COLOR="0;31"
[2025-11-25 23:45:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:45:00] HOME_URL="https://www.centos.org/"
[2025-11-25 23:45:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:45:00] 
[2025-11-25 23:45:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:45:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:45:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:45:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:45:00] 
[2025-11-25 23:45:00] 2025-11-26 04:44:27,589 | INFO     | ***************************************
[2025-11-25 23:45:00] 2025-11-26 04:44:28,092 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 23:45:00] 2025-11-26 04:44:28,169 | INFO     | sufficient remaining disk space (71143784448 B)
[2025-11-25 23:45:00] 2025-11-26 04:44:28,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:45:00] 2025-11-26 04:44:28,169 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:45:00] 2025-11-26 04:44:28,169 | INFO     | update_server=False
[2025-11-25 23:45:00] 2025-11-26 04:44:28,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:45:00] 2025-11-26 04:44:28,170 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:45:00] 2025-11-26 04:44:28,170 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:45:00] 2025-11-26 04:44:28,170 | INFO     | aborting loop
[2025-11-25 23:45:00] 2025-11-26 04:44:28,200 | INFO     | all data control threads have been joined
[2025-11-25 23:45:00] 2025-11-26 04:44:28,254 | INFO     | all payload control threads have been joined
[2025-11-25 23:45:00] 2025-11-26 04:44:28,255 | INFO     | all job control threads have been joined
[2025-11-25 23:45:00] 2025-11-26 04:44:28,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:45:00] 2025-11-26 04:44:29,176 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,177 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,206 | INFO     | [data] control thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,260 | INFO     | [payload] control thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,261 | INFO     | [job] control thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,336 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,415 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,641 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,899 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:29,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:45:00] 2025-11-26 04:44:30,056 | INFO     | [job] validate thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:30,159 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:30,287 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:30,591 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:30,669 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:30,953 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:32,185 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:45:00] 2025-11-26 04:44:48,200 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:45:00] 2025-11-26 04:44:49,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139981113038656)>', '<ExcThread(monitor, started 139980617799424)>']
[2025-11-25 23:45:00] 2025-11-26 04:44:54,614 | INFO     | all workflow threads have been joined
[2025-11-25 23:45:00] 2025-11-26 04:44:54,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:45:00] 2025-11-26 04:44:54,615 | INFO     | traces error code: 0
[2025-11-25 23:45:00] 2025-11-26 04:44:54,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:45:00] 2025-11-26 04:44:58,955 | INFO     | PID=3833831 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 23:45:00] 2025-11-26 04:44:58,955 | INFO     | .. there are 32 such processes running
[2025-11-25 23:45:00] 2025-11-26 04:44:58,956 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:45:00] 2025-11-26 04:44:58,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:45:00] 2025-11-26 04:44:58,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:45:00] 2025-11-26 04:44:58,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:45:00] 2025-11-26 04:44:58,957 | INFO     | [monitor] control thread has ended
[2025-11-25 23:45:00] 2025-11-26 04:44:59,205 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:45:00] 2025-11-26 04:44:59,210 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:45:00] 2025-11-26 04:44:59,212 [wrapper] pilotpid: 3833831
[2025-11-25 23:45:00] 2025-11-26 04:44:59,234 [wrapper] Pilot exit status: 0
[2025-11-25 23:45:00] 2025-11-26 04:44:59,277 [wrapper] pandaids: 6895385425
[2025-11-25 23:45:00] 2025-11-26 04:44:59,390 [wrapper] cleanup supervisor_pilot  144228 3833832
[2025-11-25 23:45:00] 2025-11-26 04:44:59,410 [wrapper] Test setup, not cleaning
[2025-11-25 23:45:00] 2025-11-26 04:44:59,473 [wrapper] apfmon messages muted
[2025-11-25 23:45:00] 2025-11-26 04:44:59,499 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:45:00] 2025-11-26 04:44:59,522 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:45:00]  *** Error codes and diagnostics ***
[2025-11-25 23:45:00]     "exeErrorCode": 0,
[2025-11-25 23:45:00]     "exeErrorDiag": "",
[2025-11-25 23:45:00]     "pilotErrorCode": 0,
[2025-11-25 23:45:00]     "pilotErrorDiag": "",
[2025-11-25 23:45:00]  *** Listing of results directory ***
[2025-11-25 23:45:00] total 1357068
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-25 23:45:00] -rwx------. 1 boincer umatlas     36292 Nov 24 00:10 runpilot2-wrapper.sh
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:10 queuedata.json
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:45:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-25 23:45:00] -rw-r--r--. 2 boincer umatlas 410535916 Nov 25 00:01 EVNT.47483658._001235.pool.root.1
[2025-11-25 23:45:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 23:45:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-25 23:45:00] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 00:01 input.tar.gz
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:01 pandaJob.out
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-25 23:45:00] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas       531 Nov 25 23:34 boinc_task_state.xml
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas      6844 Nov 25 23:39 init_data.xml
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas 949033364 Nov 25 23:43 HITS.47556149._002218.pool.root.1
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas      1068 Nov 25 23:43 memory_monitor_summary.json
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas   1516240 Nov 25 23:44 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas   2526939 Nov 25 23:44 log.47556149._002218.job.log.tgz.1
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas      8654 Nov 25 23:44 heartbeat.json
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas        95 Nov 25 23:44 pilot_heartbeat.json
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas       823 Nov 25 23:44 pilotlog.txt
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:44 boinc_mmap_file
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas  10546797 Nov 25 23:44 log.47556149._002218.job.log.1
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas        28 Nov 25 23:44 wrapper_checkpoint.txt
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas       353 Nov 25 23:44 output.list
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:44 runtime_log
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas  13096960 Nov 25 23:44 result.tar.gz
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas       665 Nov 25 23:44 WjlKDmC1dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcvIKDm0c4dAo.diag
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas      9348 Nov 25 23:44 runtime_log.err
[2025-11-25 23:45:00] -rw-r--r--. 1 boincer umatlas     21405 Nov 25 23:45 stderr.txt
[2025-11-25 23:45:00] HITS file was successfully produced:
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas 949033364 Nov 25 23:43 shared/HITS.pool.root.1
[2025-11-25 23:45:00]  *** Contents of shared directory: ***
[2025-11-25 23:45:00] total 1341104
[2025-11-25 23:45:00] -rw-r--r--. 2 boincer umatlas 410535916 Nov 25 00:01 ATLAS.root_0
[2025-11-25 23:45:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 23:45:00] -rw-r--r--. 2 boincer umatlas    590110 Nov 25 00:01 input.tar.gz
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas 949033364 Nov 25 23:43 HITS.pool.root.1
[2025-11-25 23:45:00] -rw-------. 1 boincer umatlas  13096960 Nov 25 23:44 result.tar.gz
23:45:01 (3823219): run_atlas exited; CPU time 248264.200333
23:45:01 (3823219): called boinc_finish(0)

</stderr_txt>
]]>

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