Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:42:07 (10427): wrapper (7.7.26015): starting
23:42:07 (10427): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:42:07] Arguments: --nthreads 8
[2025-11-24 23:42:07] Threads: 8
[2025-11-24 23:42:07] Checking for CVMFS
[2025-11-24 23:42:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:42:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:42:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:42:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:42:07] 2.11.2.0 6491 7041 73736 153270 1 96 11462613 18432000 1885 130560 0 6306265 99.992 250492 15761 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:42:07] CVMFS is ok
[2025-11-24 23:42:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:42:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:42:07] Further information can be found at the LHC@home message board.
[2025-11-24 23:42:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:42:07] Checking for apptainer binary...
[2025-11-24 23:42:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:42:07] Running /usr/bin/apptainer --version
[2025-11-24 23:42:07] apptainer version 1.3.2-1.el7
[2025-11-24 23:42:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:42:08] c-206-29.aglt2.org
[2025-11-24 23:42:08] apptainer works
[2025-11-24 23:42:08] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:42:08] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:42:08] Starting ATLAS job with PandaID=6895385153
[2025-11-24 23:42:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 19:25:23]  *** The last 200 lines of the pilot log: ***
[2025-11-25 19:25:23] 2025-11-26 00:24:28,926 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2527.8333333333335
[2025-11-25 19:25:23] 2025-11-26 00:24:28,932 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895385153/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 19:25:23] 2025-11-26 00:24:28,933 | INFO     | extracted standard info from prmon json
[2025-11-25 19:25:23] 2025-11-26 00:24:28,933 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 19:25:23] 2025-11-26 00:24:28,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 19:25:23] 2025-11-26 00:24:28,965 | INFO     | fitting pss+swap vs Time
[2025-11-25 19:25:23] 2025-11-26 00:24:28,967 | INFO     | sum of square deviations: 487772351218.47644
[2025-11-25 19:25:23] 2025-11-26 00:24:29,016 | INFO     | sum of deviations: 2219313350480.4775
[2025-11-25 19:25:23] 2025-11-26 00:24:29,016 | INFO     | mean x: 1764081208.560619
[2025-11-25 19:25:23] 2025-11-26 00:24:29,017 | INFO     | mean y: 2863186.4471195186
[2025-11-25 19:25:23] 2025-11-26 00:24:29,017 | INFO     | intersect: -8023522416.817099
[2025-11-25 19:25:23] 2025-11-26 00:24:29,018 | INFO     | chi2: 6.382318182846387
[2025-11-25 19:25:23] 2025-11-26 00:24:29,020 | INFO     | sum of square deviations: 481508423324.39655
[2025-11-25 19:25:23] 2025-11-26 00:24:29,067 | INFO     | sum of deviations: 2627024880105.5713
[2025-11-25 19:25:23] 2025-11-26 00:24:29,068 | INFO     | monitor loop #5054: job 0:6895385153 is in state 'finished'
[2025-11-25 19:25:23] 2025-11-26 00:24:29,068 | INFO     | mean x: 1764081056.0630398
[2025-11-25 19:25:23] 2025-11-26 00:24:29,068 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,068 | INFO     | mean y: 2873112.5949913645
[2025-11-25 19:25:23] 2025-11-26 00:24:29,069 | INFO     | intersect: -9621641434.429573
[2025-11-25 19:25:23] 2025-11-26 00:24:29,070 | INFO     | chi2: 2.9675974310462574
[2025-11-25 19:25:23] 2025-11-26 00:24:29,070 | INFO     | current chi2=2.9675974310462574 (change=53.502828501684505 %)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,071 | INFO     | sum of square deviations: 475298356905.3057
[2025-11-25 19:25:23] 2025-11-26 00:24:29,095 | INFO     | sum of deviations: 2774905029533.0713
[2025-11-25 19:25:23] 2025-11-26 00:24:29,096 | INFO     | mean x: 1764080903.5654814
[2025-11-25 19:25:23] 2025-11-26 00:24:29,096 | INFO     | mean y: 2876743.197745013
[2025-11-25 19:25:23] 2025-11-26 00:24:29,096 | INFO     | intersect: -10296247797.605934
[2025-11-25 19:25:23] 2025-11-26 00:24:29,097 | INFO     | chi2: 2.3936011917676447
[2025-11-25 19:25:23] 2025-11-26 00:24:29,097 | INFO     | current chi2=2.3936011917676447 (change=19.34211942878803 %)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,097 | INFO     | right removable region: 1152
[2025-11-25 19:25:23] 2025-11-26 00:24:29,098 | INFO     | sum of square deviations: 481508025604.39746
[2025-11-25 19:25:23] 2025-11-26 00:24:29,129 | INFO     | sum of deviations: 1918687355181.4963
[2025-11-25 19:25:23] 2025-11-26 00:24:29,130 | INFO     | mean x: 1764081361.0630398
[2025-11-25 19:25:23] 2025-11-26 00:24:29,130 | INFO     | mean y: 2870496.8013816928
[2025-11-25 19:25:23] 2025-11-26 00:24:29,130 | INFO     | intersect: -7026546295.856344
[2025-11-25 19:25:23] 2025-11-26 00:24:29,131 | INFO     | chi2: 4.352303163964618
[2025-11-25 19:25:23] 2025-11-26 00:24:29,131 | INFO     | current chi2=4.352303163964618 (change=31.806860152127708 %)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,132 | INFO     | sum of square deviations: 475297702497.5649
[2025-11-25 19:25:23] 2025-11-26 00:24:29,161 | INFO     | sum of deviations: 1842443581329.798
[2025-11-25 19:25:23] 2025-11-26 00:24:29,161 | INFO     | mean x: 1764081513.5637467
[2025-11-25 19:25:23] 2025-11-26 00:24:29,161 | INFO     | mean y: 2872368.7510841284
[2025-11-25 19:25:23] 2025-11-26 00:24:29,162 | INFO     | intersect: -6835411604.701811
[2025-11-25 19:25:23] 2025-11-26 00:24:29,163 | INFO     | chi2: 4.3017922229521
[2025-11-25 19:25:23] 2025-11-26 00:24:29,163 | INFO     | current chi2=4.3017922229521 (change=1.1605565860101092 %)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,163 | INFO     | left removable region: 20
[2025-11-25 19:25:23] 2025-11-26 00:24:29,164 | INFO     | sum of square deviations: 449797825704.34625
[2025-11-25 19:25:23] 2025-11-26 00:24:29,187 | INFO     | sum of deviations: 2314803965023.2466
[2025-11-25 19:25:23] 2025-11-26 00:24:29,187 | INFO     | mean x: 1764081483.0706713
[2025-11-25 19:25:23] 2025-11-26 00:24:29,187 | INFO     | mean y: 2889245.034452297
[2025-11-25 19:25:23] 2025-11-26 00:24:29,188 | INFO     | intersect: -9075640214.821543
[2025-11-25 19:25:23] 2025-11-26 00:24:29,189 | INFO     | chi2: 0.21159903340148148
[2025-11-25 19:25:23] 2025-11-26 00:24:29,189 | INFO     | current memory leak: 5.15 B/s (using 1132 data points, chi2=0.21)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | could have reported an average CPU frequency of 2625 MHz (42 samples)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | ..............................
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . Timing measurements:
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . get job = 0 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . initial setup = 2 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . payload setup = 5 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . stage-in = 0 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . payload execution = 70892 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,190 | INFO     | . stage-out = 4 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,191 | INFO     | . log creation = 0 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,191 | INFO     | ..............................
[2025-11-25 19:25:23] 2025-11-26 00:24:29,314 | INFO     | 
[2025-11-25 19:25:23] 2025-11-26 00:24:29,314 | INFO     | job summary report
[2025-11-25 19:25:23] 2025-11-26 00:24:29,315 | INFO     | --------------------------------------------------
[2025-11-25 19:25:23] 2025-11-26 00:24:29,315 | INFO     | PanDA job id: 6895385153
[2025-11-25 19:25:23] 2025-11-26 00:24:29,315 | INFO     | task id: 47556149
[2025-11-25 19:25:23] 2025-11-26 00:24:29,315 | INFO     | errors: (none)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,315 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 19:25:23] 2025-11-26 00:24:29,316 | INFO     | pilot state: finished 
[2025-11-25 19:25:23] 2025-11-26 00:24:29,316 | INFO     | transexitcode: 0
[2025-11-25 19:25:23] 2025-11-26 00:24:29,316 | INFO     | exeerrorcode: 0
[2025-11-25 19:25:23] 2025-11-26 00:24:29,316 | INFO     | exeerrordiag: 
[2025-11-25 19:25:23] 2025-11-26 00:24:29,316 | INFO     | exitcode: 0
[2025-11-25 19:25:23] 2025-11-26 00:24:29,316 | INFO     | exitmsg: OK
[2025-11-25 19:25:23] 2025-11-26 00:24:29,317 | INFO     | cpuconsumptiontime: 547071 s
[2025-11-25 19:25:23] 2025-11-26 00:24:29,317 | INFO     | nevents: 1000
[2025-11-25 19:25:23] 2025-11-26 00:24:29,317 | INFO     | neventsw: 0
[2025-11-25 19:25:23] 2025-11-26 00:24:29,317 | INFO     | pid: 20546
[2025-11-25 19:25:23] 2025-11-26 00:24:29,317 | INFO     | pgrp: 20546
[2025-11-25 19:25:23] 2025-11-26 00:24:29,317 | INFO     | corecount: 8
[2025-11-25 19:25:23] 2025-11-26 00:24:29,318 | INFO     | event service: False
[2025-11-25 19:25:23] 2025-11-26 00:24:29,318 | INFO     | sizes: {0: 2284309, 1: 2284309, 4: 2284599, 12: 2284627, 70902: 2341425, 70908: 2350424, 70909: 2350608, 70913: 2350854}
[2025-11-25 19:25:23] 2025-11-26 00:24:29,318 | INFO     | --------------------------------------------------
[2025-11-25 19:25:23] 2025-11-26 00:24:29,318 | INFO     | 
[2025-11-25 19:25:23] 2025-11-26 00:24:29,318 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 19:25:23] 2025-11-26 00:24:29,342 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,342 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,343 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 19:25:23] 2025-11-26 00:24:29,345 | INFO     | job 6895385153 has completed (purged errors)
[2025-11-25 19:25:23] 2025-11-26 00:24:29,345 | INFO     | overall cleanup function is called
[2025-11-25 19:25:23] 2025-11-26 00:24:30,356 | INFO     | --- collectZombieJob: --- 10, [20546]
[2025-11-25 19:25:23] 2025-11-26 00:24:30,357 | INFO     | zombie collector waiting for pid 20546
[2025-11-25 19:25:23] 2025-11-26 00:24:30,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 19:25:23] 2025-11-26 00:24:30,357 | INFO     | collected zombie processes
[2025-11-25 19:25:23] 2025-11-26 00:24:30,357 | INFO     | will attempt to kill all subprocesses of pid=20546
[2025-11-25 19:25:23] 2025-11-26 00:24:30,496 | INFO     | process IDs to be killed: [20546] (in reverse order)
[2025-11-25 19:25:23] 2025-11-26 00:24:30,556 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 19:25:23] 2025-11-26 00:24:30,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 19:25:23] 2025-11-26 00:24:30,559 | INFO     | did not find any defunct processes belonging to 20546
[2025-11-25 19:25:23] 2025-11-26 00:24:30,561 | INFO     | did not find any defunct processes belonging to 20546
[2025-11-25 19:25:23] 2025-11-26 00:24:30,563 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 19:25:23] 2025-11-26 00:24:30,563 | INFO     | ready for new job
[2025-11-25 19:25:23] 2025-11-26 00:24:30,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 19:25:23] 2025-11-26 00:24:30,566 | INFO     | ***************************************
[2025-11-25 19:25:23] 2025-11-26 00:24:30,566 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 19:25:23] 2025-11-26 00:24:30,567 | INFO     | ***************************************
[2025-11-25 19:25:23] 2025-11-26 00:24:30,567 | INFO     | 
[2025-11-25 19:25:23] 2025-11-26 00:24:30,568 | INFO     | architecture information:
[2025-11-25 19:25:23] 2025-11-26 00:24:30,568 | INFO     | executing command: cat /etc/os-release
[2025-11-25 19:25:23] 2025-11-26 00:24:30,579 | INFO     | cat /etc/os-release:
[2025-11-25 19:25:23] NAME="CentOS Linux"
[2025-11-25 19:25:23] VERSION="7 (Core)"
[2025-11-25 19:25:23] ID="centos"
[2025-11-25 19:25:23] ID_LIKE="rhel fedora"
[2025-11-25 19:25:23] VERSION_ID="7"
[2025-11-25 19:25:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 19:25:23] ANSI_COLOR="0;31"
[2025-11-25 19:25:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 19:25:23] HOME_URL="https://www.centos.org/"
[2025-11-25 19:25:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 19:25:23] 
[2025-11-25 19:25:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 19:25:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 19:25:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 19:25:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 19:25:23] 
[2025-11-25 19:25:23] 2025-11-26 00:24:30,579 | INFO     | ***************************************
[2025-11-25 19:25:23] 2025-11-26 00:24:31,083 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 19:25:23] 2025-11-26 00:24:31,100 | INFO     | sufficient remaining disk space (25508708352 B)
[2025-11-25 19:25:23] 2025-11-26 00:24:31,100 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 19:25:23] 2025-11-26 00:24:31,100 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 19:25:23] 2025-11-26 00:24:31,100 | INFO     | update_server=False
[2025-11-25 19:25:23] 2025-11-26 00:24:31,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 19:25:23] 2025-11-26 00:24:31,101 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:25:23] 2025-11-26 00:24:31,131 | INFO     | all data control threads have been joined
[2025-11-25 19:25:23] 2025-11-26 00:24:31,209 | INFO     | all payload control threads have been joined
[2025-11-25 19:25:23] 2025-11-26 00:24:31,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 19:25:23] 2025-11-26 00:24:31,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 19:25:23] 2025-11-26 00:24:31,571 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 19:25:23] 2025-11-26 00:24:31,572 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 19:25:23] 2025-11-26 00:24:31,572 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 19:25:23] 2025-11-26 00:24:31,572 | INFO     | will abort loop
[2025-11-25 19:25:23] 2025-11-26 00:24:31,596 | INFO     | all job control threads have been joined
[2025-11-25 19:25:23] 2025-11-26 00:24:32,106 | INFO     | [job] retrieve thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,107 | INFO     | [job] queue monitor thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,118 | INFO     | [job] validate thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,138 | INFO     | [data] control thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,215 | INFO     | [payload] control thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,276 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,577 | INFO     | [job] job monitor thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,602 | INFO     | [job] control thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,685 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,826 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:32,826 | INFO     | [data] copytool_in thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:33,372 | INFO     | [payload] validate_post thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:33,561 | INFO     | [data] copytool_out thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:33,582 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:33,627 | INFO     | [payload] failed_post thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:24:35,337 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 19:25:23] 2025-11-26 00:25:00,764 | INFO     | PID=14109 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 19:25:23] 2025-11-26 00:25:00,764 | INFO     | .. there are 3 such processes running
[2025-11-25 19:25:23] 2025-11-26 00:25:00,765 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 19:25:23] 2025-11-26 00:25:00,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 19:25:23] 2025-11-26 00:25:00,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 19:25:23] 2025-11-26 00:25:17,542 | INFO     | [monitor] cgroup control has ended
[2025-11-25 19:25:23] 2025-11-26 00:25:18,277 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139989428164416)>', '<ExcThread(monitor, started 139988989622016)>']
[2025-11-25 19:25:23] 2025-11-26 00:25:18,859 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 19:25:23] 2025-11-26 00:25:18,860 | INFO     | [monitor] control thread has ended
[2025-11-25 19:25:23] 2025-11-26 00:25:23,302 | INFO     | all workflow threads have been joined
[2025-11-25 19:25:23] 2025-11-26 00:25:23,303 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 19:25:23] 2025-11-26 00:25:23,303 | INFO     | traces error code: 0
[2025-11-25 19:25:23] 2025-11-26 00:25:23,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 19:25:23] 2025-11-26 00:25:23,429 [wrapper] ==== pilot stdout END ====
[2025-11-25 19:25:23] 2025-11-26 00:25:23,432 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 19:25:23] 2025-11-26 00:25:23,435 [wrapper] pilotpid: 14109
[2025-11-25 19:25:23] 2025-11-26 00:25:23,437 [wrapper] Pilot exit status: 0
[2025-11-25 19:25:23] 2025-11-26 00:25:23,445 [wrapper] pandaids: 6895385153
[2025-11-25 19:25:23] 2025-11-26 00:25:23,474 [wrapper] cleanup supervisor_pilot 10954 14110
[2025-11-25 19:25:23] 2025-11-26 00:25:23,477 [wrapper] Test setup, not cleaning
[2025-11-25 19:25:23] 2025-11-26 00:25:23,480 [wrapper] apfmon messages muted
[2025-11-25 19:25:23] 2025-11-26 00:25:23,482 [wrapper] ==== wrapper stdout END ====
[2025-11-25 19:25:23] 2025-11-26 00:25:23,485 [wrapper] ==== wrapper stderr END ====
[2025-11-25 19:25:23]  *** Error codes and diagnostics ***
[2025-11-25 19:25:23]     "exeErrorCode": 0,
[2025-11-25 19:25:23]     "exeErrorDiag": "",
[2025-11-25 19:25:23]     "pilotErrorCode": 0,
[2025-11-25 19:25:23]     "pilotErrorDiag": "",
[2025-11-25 19:25:23]  *** Listing of results directory ***
[2025-11-25 19:25:23] total 1329860
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-25 19:25:23] -rwx------ 1 boincer umatlas     36292 Nov 24 00:07 runpilot2-wrapper.sh
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 00:07 queuedata.json
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas       100 Nov 24 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 19:25:23] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 23:42 run_atlas
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas       105 Nov 24 23:42 job.xml
[2025-11-25 19:25:23] -rw-r--r-- 2 boincer umatlas 410539520 Nov 24 23:42 EVNT.47483658._001232.pool.root.1
[2025-11-25 19:25:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 23:42 start_atlas.sh
[2025-11-25 19:25:23] drwxrwx--x 2 boincer umatlas      4096 Nov 24 23:42 shared
[2025-11-25 19:25:23] -rw-r--r-- 2 boincer umatlas    590107 Nov 24 23:42 input.tar.gz
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas         0 Nov 24 23:42 boinc_lockfile
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 23:42 pandaJob.out
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas        57 Nov 24 23:42 setup.sh.local
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas    991801 Nov 24 23:42 agis_schedconf.cvmfs.json
[2025-11-25 19:25:23] drwx------ 5 boincer umatlas      4096 Nov 24 23:42 pilot3
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas       533 Nov 25 19:10 boinc_task_state.xml
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas      5954 Nov 25 19:20 init_data.xml
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas 923089462 Nov 25 19:23 HITS.47556149._002190.pool.root.1
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas        95 Nov 25 19:24 pilot_heartbeat.json
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas      1068 Nov 25 19:24 memory_monitor_summary.json
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas   1516240 Nov 25 19:24 agis_ddmendpoints.agis.ALL.json
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas   2319016 Nov 25 19:24 log.47556149._002190.job.log.tgz.1
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas      8676 Nov 25 19:24 heartbeat.json
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 19:24 boinc_mmap_file
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas        29 Nov 25 19:24 wrapper_checkpoint.txt
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas      5007 Nov 25 19:25 pilotlog.txt
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas   9792802 Nov 25 19:25 log.47556149._002190.job.log.1
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas       353 Nov 25 19:25 output.list
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas       620 Nov 25 19:25 runtime_log
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas  12134400 Nov 25 19:25 result.tar.gz
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas      9343 Nov 25 19:25 runtime_log.err
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas       668 Nov 25 19:25 HJwMDmrydh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWvIKDmdqvPKm.diag
[2025-11-25 19:25:23] -rw-r--r-- 1 boincer umatlas     21321 Nov 25 19:25 stderr.txt
[2025-11-25 19:25:23] HITS file was successfully produced:
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas 923089462 Nov 25 19:23 shared/HITS.pool.root.1
[2025-11-25 19:25:23]  *** Contents of shared directory: ***
[2025-11-25 19:25:23] total 1314828
[2025-11-25 19:25:23] -rw-r--r-- 2 boincer umatlas 410539520 Nov 24 23:42 ATLAS.root_0
[2025-11-25 19:25:23] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 23:42 start_atlas.sh
[2025-11-25 19:25:23] -rw-r--r-- 2 boincer umatlas    590107 Nov 24 23:42 input.tar.gz
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas 923089462 Nov 25 19:23 HITS.pool.root.1
[2025-11-25 19:25:23] -rw------- 1 boincer umatlas  12134400 Nov 25 19:25 result.tar.gz
19:25:24 (10427): run_atlas exited; CPU time 545896.085485
19:25:24 (10427): called boinc_finish(0)

</stderr_txt>
]]>

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