Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:51:49 (3267070): wrapper (7.7.26015): starting
05:51:49 (3267070): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 05:51:49] Arguments: --nthreads 3
[2025-11-25 05:51:49] Threads: 3
[2025-11-25 05:51:49] Checking for CVMFS
[2025-11-25 05:51:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:51:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:51:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:51:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:51:49] 2.9.2.0 2683671 124 63924 153270 3 88 35108329 36864000 0 130560 0 1752876 99.999 7911 15665 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 05:51:49] CVMFS is ok
[2025-11-25 05:51:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:51:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:51:49] Further information can be found at the LHC@home message board.
[2025-11-25 05:51:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:51:49] Checking for apptainer binary...
[2025-11-25 05:51:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:51:49] Running /usr/bin/apptainer --version
[2025-11-25 05:51:49] apptainer version 1.4.1-1.1
[2025-11-25 05:51:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:51:49] thA335
[2025-11-25 05:51:49] apptainer works
[2025-11-25 05:51:49] Set ATHENA_PROC_NUMBER=3
[2025-11-25 05:51:49] Set ATHENA_CORE_NUMBER=3
[2025-11-25 05:51:49] Starting ATLAS job with PandaID=6895384704
[2025-11-25 05:51:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:56:08]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:56:08] 2025-11-25 04:55:19,555 | INFO     | update_server=False
[2025-11-25 05:56:08] 2025-11-25 04:55:19,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:56:08] 2025-11-25 04:55:19,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:56:08] 2025-11-25 04:55:19,556 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:56:08] 2025-11-25 04:55:19,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:56:08] 2025-11-25 04:55:20,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:56:08] 2025-11-25 04:55:20,124 | INFO     | aborting loop
[2025-11-25 05:56:08] 2025-11-25 04:55:20,209 | INFO     | all data control threads have been joined
[2025-11-25 05:56:08] 2025-11-25 04:55:20,210 | INFO     | all payload control threads have been joined
[2025-11-25 05:56:08] 2025-11-25 04:55:20,561 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:20,562 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:20,579 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:20,954 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,019 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,130 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,191 | INFO     | [job] validate thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,215 | INFO     | [data] control thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,216 | INFO     | [payload] control thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,236 | INFO     | all job control threads have been joined
[2025-11-25 05:56:08] 2025-11-25 04:55:21,271 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,331 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,331 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,557 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:21,562 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:22,242 | INFO     | [job] control thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:23,563 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:56:08] 2025-11-25 04:55:50,520 | INFO     | PID=3270799 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 05:56:08] 2025-11-25 04:55:50,521 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:56:08] 2025-11-25 04:55:50,521 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:56:08] 2025-11-25 04:55:50,521 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:56:08] 2025-11-25 04:56:01,459 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:56:08] 2025-11-25 04:56:03,143 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140017662965568)>', '<ExcThread(monitor, started 140016864978688)>']
[2025-11-25 05:56:08] 2025-11-25 04:56:03,585 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:56:08] 2025-11-25 04:56:03,585 | INFO     | [monitor] control thread has ended
[2025-11-25 05:56:08] 2025-11-25 04:56:08,148 | INFO     | all workflow threads have been joined
[2025-11-25 05:56:08] 2025-11-25 04:56:08,148 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:56:08] 2025-11-25 04:56:08,149 | INFO     | traces error code: 0
[2025-11-25 05:56:08] 2025-11-25 04:56:08,149 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:56:08] 2025-11-25 04:56:08,195 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:56:08] 2025-11-25 04:56:08,198 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:56:08] 2025-11-25 04:56:08,201 [wrapper] pilotpid: 3270799
[2025-11-25 05:56:08] 2025-11-25 04:56:08,204 [wrapper] Pilot exit status: 0
[2025-11-25 05:56:08] 2025-11-25 04:56:08,212 [wrapper] pandaids: 6895384704
[2025-11-25 05:56:08] 2025-11-25 04:56:08,229 [wrapper] cleanup supervisor_pilot 3270805 3270800
[2025-11-25 05:56:08] 2025-11-25 04:56:08,231 [wrapper] Test setup, not cleaning
[2025-11-25 05:56:08] 2025-11-25 04:56:08,234 [wrapper] apfmon messages muted
[2025-11-25 05:56:08] 2025-11-25 04:56:08,236 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:56:08] 2025-11-25 04:56:08,239 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:56:08]  *** Error codes and diagnostics ***
[2025-11-25 05:56:08]     "exeErrorCode": 65,
[2025-11-25 05:56:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 05:56:08]     "pilotErrorCode": 1305,
[2025-11-25 05:56:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 05:56:08]  *** Listing of results directory ***
[2025-11-25 05:56:08] total 404352
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc    576529 Nov 24 05:40 pilot3.tar.gz
[2025-11-25 05:56:08] -rwx------ 1 boinc boinc     36292 Nov 24 06:10 runpilot2-wrapper.sh
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc      5112 Nov 24 06:10 queuedata.json
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc       100 Nov 25 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:56:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 05:51 run_atlas
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc       105 Nov 25 05:51 job.xml
[2025-11-25 05:56:08] -rw-r--r-- 2 boinc boinc 409855410 Nov 25 05:51 EVNT.47483658._001229.pool.root.1
[2025-11-25 05:56:08] -rw-r--r-- 2 boinc boinc    590104 Nov 25 05:51 input.tar.gz
[2025-11-25 05:56:08] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:51 start_atlas.sh
[2025-11-25 05:56:08] drwxrwx--x 2 boinc boinc      4096 Nov 25 05:51 shared
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:51 boinc_setup_complete
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc      6196 Nov 25 05:51 init_data.xml
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:51 boinc_lockfile
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc      2786 Nov 25 05:51 pandaJob.out
[2025-11-25 05:56:08] -rw------- 1 boinc boinc    991801 Nov 25 05:52 agis_schedconf.cvmfs.json
[2025-11-25 05:56:08] -rw------- 1 boinc boinc   1516227 Nov 25 05:52 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:56:08] drwx------ 5 boinc boinc      4096 Nov 25 05:52 pilot3
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc       522 Nov 25 05:52 boinc_task_state.xml
[2025-11-25 05:56:08] -rw------- 1 boinc boinc       951 Nov 25 05:53 memory_monitor_summary.json
[2025-11-25 05:56:08] -rw------- 1 boinc boinc     56315 Nov 25 05:53 log.47556149._002158.job.log.tgz.1
[2025-11-25 05:56:08] -rw------- 1 boinc boinc        95 Nov 25 05:55 pilot_heartbeat.json
[2025-11-25 05:56:08] -rw------- 1 boinc boinc      8414 Nov 25 05:55 heartbeat.json
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc        22 Nov 25 05:55 wrapper_checkpoint.txt
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc      8192 Nov 25 05:55 boinc_mmap_file
[2025-11-25 05:56:08] -rw------- 1 boinc boinc      4752 Nov 25 05:56 pilotlog.txt
[2025-11-25 05:56:08] -rw------- 1 boinc boinc     93879 Nov 25 05:56 log.47556149._002158.job.log.1
[2025-11-25 05:56:08] -rw------- 1 boinc boinc       186 Nov 25 05:56 output.list
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc       620 Nov 25 05:56 runtime_log
[2025-11-25 05:56:08] -rw------- 1 boinc boinc    174080 Nov 25 05:56 result.tar.gz
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc      8744 Nov 25 05:56 runtime_log.err
[2025-11-25 05:56:08] -rw------- 1 boinc boinc       649 Nov 25 05:56 E1LLDmq1dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHSLKDmujgHOm.diag
[2025-11-25 05:56:08] -rw-r--r-- 1 boinc boinc      7789 Nov 25 05:56 stderr.txt
[2025-11-25 05:56:08] No HITS result produced
[2025-11-25 05:56:08]  *** Contents of shared directory: ***
[2025-11-25 05:56:08] total 401024
[2025-11-25 05:56:08] -rw-r--r-- 2 boinc boinc 409855410 Nov 25 05:51 ATLAS.root_0
[2025-11-25 05:56:08] -rw-r--r-- 2 boinc boinc    590104 Nov 25 05:51 input.tar.gz
[2025-11-25 05:56:08] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:51 start_atlas.sh
[2025-11-25 05:56:08] -rw------- 1 boinc boinc    174080 Nov 25 05:56 result.tar.gz
05:56:09 (3267070): run_atlas exited; CPU time 31.802183
05:56:09 (3267070): called boinc_finish(0)

</stderr_txt>
]]>

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