Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:24:04 (8668): wrapper (7.7.26015): starting
23:24:04 (8668): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:24:04] Arguments: --nthreads 8
[2025-11-24 23:24:04] Threads: 8
[2025-11-24 23:24:04] Checking for CVMFS
[2025-11-24 23:24:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:24:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:24:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:24:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:24:04] 2.11.2.0 8318 115825 137148 153270 1 81 12470493 18432000 1885 130560 0 82370827 99.972 5050200 31731 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:24:04] CVMFS is ok
[2025-11-24 23:24:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:24:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:24:04] Further information can be found at the LHC@home message board.
[2025-11-24 23:24:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:24:04] Checking for apptainer binary...
[2025-11-24 23:24:04] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:24:04] Running /usr/bin/apptainer --version
[2025-11-24 23:24:04] apptainer version 1.3.2-1.el7
[2025-11-24 23:24:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:24:05] c-206-28.aglt2.org
[2025-11-24 23:24:05] apptainer works
[2025-11-24 23:24:05] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:24:05] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:24:05] Starting ATLAS job with PandaID=6895385398
[2025-11-24 23:24:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:11:09 (22698): wrapper (7.7.26015): starting
12:11:09 (22698): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:11:09] Arguments: --nthreads 8
[2025-11-25 12:11:09] Threads: 8
[2025-11-25 12:11:09] This job has been restarted, cleaning up previous attempt
[2025-11-25 12:11:09] Checking for CVMFS
[2025-11-25 12:11:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:11:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:11:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:11:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:11:10] 2.11.2.0 8318 116592 132124 153290 2 1 12577118 18432000 1 130560 0 83105149 99.973 5077858 31749 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:11:10] CVMFS is ok
[2025-11-25 12:11:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:11:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:11:10] Further information can be found at the LHC@home message board.
[2025-11-25 12:11:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:11:10] Checking for apptainer binary...
[2025-11-25 12:11:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:11:10] Running /usr/bin/apptainer --version
[2025-11-25 12:11:10] apptainer version 1.3.2-1.el7
[2025-11-25 12:11:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:11:11] c-206-28.aglt2.org
[2025-11-25 12:11:11] apptainer works
[2025-11-25 12:11:11] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:11:11] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:11:11] Starting ATLAS job with PandaID=6895385398
[2025-11-25 12:11:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:35:24]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:35:24] 2025-11-26 12:34:41,380 | INFO     | time since job start (69798s) is within the limit (172800.0s)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,228 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-26 07:35:24] 2025-11-26 12:34:43,234 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2483.5
[2025-11-26 07:35:24] 2025-11-26 12:34:43,238 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895385398/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,239 | INFO     | extracted standard info from prmon json
[2025-11-26 07:35:24] 2025-11-26 12:34:43,239 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:35:24] 2025-11-26 12:34:43,240 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:35:24] 2025-11-26 12:34:43,269 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:35:24] 2025-11-26 12:34:43,271 | INFO     | sum of square deviations: 464254230478.0487
[2025-11-26 07:35:24] 2025-11-26 12:34:43,316 | INFO     | sum of deviations: 2235148451809.7925
[2025-11-26 07:35:24] 2025-11-26 12:34:43,316 | INFO     | mean x: 1764125572.2788463
[2025-11-26 07:35:24] 2025-11-26 12:34:43,316 | INFO     | mean y: 2863868.9912587414
[2025-11-26 07:35:24] 2025-11-26 12:34:43,316 | INFO     | intersect: -8490505243.912426
[2025-11-26 07:35:24] 2025-11-26 12:34:43,318 | INFO     | chi2: 5.234017053581063
[2025-11-26 07:35:24] 2025-11-26 12:34:43,320 | INFO     | sum of square deviations: 458193811850.0023
[2025-11-26 07:35:24] 2025-11-26 12:34:43,365 | INFO     | sum of deviations: 2564710281951.1934
[2025-11-26 07:35:24] 2025-11-26 12:34:43,365 | INFO     | mean x: 1764125419.7822652
[2025-11-26 07:35:24] 2025-11-26 12:34:43,365 | INFO     | mean y: 2872159.504828797
[2025-11-26 07:35:24] 2025-11-26 12:34:43,365 | INFO     | intersect: -9871705990.07569
[2025-11-26 07:35:24] 2025-11-26 12:34:43,367 | INFO     | chi2: 2.8043443875778586
[2025-11-26 07:35:24] 2025-11-26 12:34:43,367 | INFO     | current chi2=2.8043443875778586 (change=46.42080148250274 %)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,369 | INFO     | sum of square deviations: 452186370959.42865
[2025-11-26 07:35:24] 2025-11-26 12:34:43,391 | INFO     | time since job start (69800s) is within the limit (172800.0s)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,414 | INFO     | sum of deviations: 2672075103327.2847
[2025-11-26 07:35:24] 2025-11-26 12:34:43,414 | INFO     | mean x: 1764125267.2857144
[2025-11-26 07:35:24] 2025-11-26 12:34:43,415 | INFO     | mean y: 2874882.7028218694
[2025-11-26 07:35:24] 2025-11-26 12:34:43,415 | INFO     | intersect: -10421754227.332188
[2025-11-26 07:35:24] 2025-11-26 12:34:43,417 | INFO     | chi2: 2.4278526416177315
[2025-11-26 07:35:24] 2025-11-26 12:34:43,417 | INFO     | current chi2=2.4278526416177315 (change=13.425303526479748 %)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,417 | INFO     | right removable region: 1133
[2025-11-26 07:35:24] 2025-11-26 12:34:43,419 | INFO     | sum of square deviations: 458193337880.5653
[2025-11-26 07:35:24] 2025-11-26 12:34:43,464 | INFO     | sum of deviations: 1951767403919.4395
[2025-11-26 07:35:24] 2025-11-26 12:34:43,464 | INFO     | mean x: 1764125724.781387
[2025-11-26 07:35:24] 2025-11-26 12:34:43,465 | INFO     | mean y: 2870989.973661106
[2025-11-26 07:35:24] 2025-11-26 12:34:43,465 | INFO     | intersect: -7511780143.914229
[2025-11-26 07:35:24] 2025-11-26 12:34:43,467 | INFO     | chi2: 3.2472243869963417
[2025-11-26 07:35:24] 2025-11-26 12:34:43,467 | INFO     | current chi2=3.2472243869963417 (change=37.959231814603605 %)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,468 | INFO     | sum of square deviations: 452185561857.69977
[2025-11-26 07:35:24] 2025-11-26 12:34:43,513 | INFO     | sum of deviations: 1856450640942.6936
[2025-11-26 07:35:24] 2025-11-26 12:34:43,514 | INFO     | mean x: 1764125877.282187
[2025-11-26 07:35:24] 2025-11-26 12:34:43,514 | INFO     | mean y: 2873409.172839506
[2025-11-26 07:35:24] 2025-11-26 12:34:43,514 | INFO     | intersect: -7239756369.03033
[2025-11-26 07:35:24] 2025-11-26 12:34:43,516 | INFO     | chi2: 3.1443827384403327
[2025-11-26 07:35:24] 2025-11-26 12:34:43,516 | INFO     | current chi2=3.1443827384403327 (change=3.167063199200005 %)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,516 | INFO     | left removable region: 20
[2025-11-26 07:35:24] 2025-11-26 12:34:43,518 | INFO     | sum of square deviations: 427526902907.64136
[2025-11-26 07:35:24] 2025-11-26 12:34:43,560 | INFO     | sum of deviations: 2168930363799.4355
[2025-11-26 07:35:24] 2025-11-26 12:34:43,561 | INFO     | mean x: 1764125846.7915545
[2025-11-26 07:35:24] 2025-11-26 12:34:43,561 | INFO     | mean y: 2888598.174303684
[2025-11-26 07:35:24] 2025-11-26 12:34:43,561 | INFO     | intersect: -8946878278.826609
[2025-11-26 07:35:24] 2025-11-26 12:34:43,563 | INFO     | chi2: 0.22121661757750746
[2025-11-26 07:35:24] 2025-11-26 12:34:43,563 | INFO     | current memory leak: 5.07 B/s (using 1113 data points, chi2=0.22)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,564 | INFO     | could have reported an average CPU frequency of 2583 MHz (41 samples)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,564 | INFO     | ..............................
[2025-11-26 07:35:24] 2025-11-26 12:34:43,565 | INFO     | . Timing measurements:
[2025-11-26 07:35:24] 2025-11-26 12:34:43,565 | INFO     | . get job = 0 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,565 | INFO     | . initial setup = 2 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,565 | INFO     | . payload setup = 6 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,565 | INFO     | . stage-in = 0 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,565 | INFO     | . payload execution = 69762 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,566 | INFO     | . stage-out = 3 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,566 | INFO     | . log creation = 0 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,566 | INFO     | ..............................
[2025-11-26 07:35:24] 2025-11-26 12:34:43,785 | INFO     | 
[2025-11-26 07:35:24] 2025-11-26 12:34:43,789 | INFO     | job summary report
[2025-11-26 07:35:24] 2025-11-26 12:34:43,789 | INFO     | --------------------------------------------------
[2025-11-26 07:35:24] 2025-11-26 12:34:43,789 | INFO     | PanDA job id: 6895385398
[2025-11-26 07:35:24] 2025-11-26 12:34:43,789 | INFO     | task id: 47556161
[2025-11-26 07:35:24] 2025-11-26 12:34:43,790 | INFO     | errors: (none)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,790 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:35:24] 2025-11-26 12:34:43,790 | INFO     | pilot state: finished 
[2025-11-26 07:35:24] 2025-11-26 12:34:43,790 | INFO     | transexitcode: 0
[2025-11-26 07:35:24] 2025-11-26 12:34:43,790 | INFO     | exeerrorcode: 0
[2025-11-26 07:35:24] 2025-11-26 12:34:43,790 | INFO     | exeerrordiag: 
[2025-11-26 07:35:24] 2025-11-26 12:34:43,791 | INFO     | exitcode: 0
[2025-11-26 07:35:24] 2025-11-26 12:34:43,791 | INFO     | exitmsg: OK
[2025-11-26 07:35:24] 2025-11-26 12:34:43,791 | INFO     | cpuconsumptiontime: 545410 s
[2025-11-26 07:35:24] 2025-11-26 12:34:43,791 | INFO     | nevents: 1000
[2025-11-26 07:35:24] 2025-11-26 12:34:43,791 | INFO     | neventsw: 0
[2025-11-26 07:35:24] 2025-11-26 12:34:43,791 | INFO     | pid: 21533
[2025-11-26 07:35:24] 2025-11-26 12:34:43,792 | INFO     | pgrp: 21533
[2025-11-26 07:35:24] 2025-11-26 12:34:43,792 | INFO     | corecount: 8
[2025-11-26 07:35:24] 2025-11-26 12:34:43,792 | INFO     | event service: False
[2025-11-26 07:35:24] 2025-11-26 12:34:43,792 | INFO     | sizes: {0: 2284168, 1: 2284339, 5: 2284601, 11: 2284657, 69773: 2340913, 69777: 2349907, 69778: 2350091, 69785: 2350433}
[2025-11-26 07:35:24] 2025-11-26 12:34:43,792 | INFO     | --------------------------------------------------
[2025-11-26 07:35:24] 2025-11-26 12:34:43,793 | INFO     | 
[2025-11-26 07:35:24] 2025-11-26 12:34:43,793 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 07:35:24] 2025-11-26 12:34:43,817 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,817 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,817 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,818 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,818 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,818 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,818 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,818 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,818 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,819 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,819 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,819 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,819 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,820 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,821 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:35:24] 2025-11-26 12:34:43,821 | INFO     | job 6895385398 has completed (purged errors)
[2025-11-26 07:35:24] 2025-11-26 12:34:43,821 | INFO     | overall cleanup function is called
[2025-11-26 07:35:24] 2025-11-26 12:34:44,837 | INFO     | --- collectZombieJob: --- 10, [21533]
[2025-11-26 07:35:24] 2025-11-26 12:34:44,838 | INFO     | zombie collector waiting for pid 21533
[2025-11-26 07:35:24] 2025-11-26 12:34:44,838 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:35:24] 2025-11-26 12:34:44,838 | INFO     | collected zombie processes
[2025-11-26 07:35:24] 2025-11-26 12:34:44,838 | INFO     | will attempt to kill all subprocesses of pid=21533
[2025-11-26 07:35:24] 2025-11-26 12:34:45,011 | INFO     | process IDs to be killed: [21533] (in reverse order)
[2025-11-26 07:35:24] 2025-11-26 12:34:45,071 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:35:24] 2025-11-26 12:34:45,071 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:35:24] 2025-11-26 12:34:45,077 | INFO     | did not find any defunct processes belonging to 21533
[2025-11-26 07:35:24] 2025-11-26 12:34:45,082 | INFO     | did not find any defunct processes belonging to 21533
[2025-11-26 07:35:24] 2025-11-26 12:34:45,084 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:35:24] 2025-11-26 12:34:45,084 | INFO     | ready for new job
[2025-11-26 07:35:24] 2025-11-26 12:34:45,084 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:35:24] 2025-11-26 12:34:45,089 | INFO     | ***************************************
[2025-11-26 07:35:24] 2025-11-26 12:34:45,089 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:35:24] 2025-11-26 12:34:45,090 | INFO     | ***************************************
[2025-11-26 07:35:24] 2025-11-26 12:34:45,090 | INFO     | 
[2025-11-26 07:35:24] 2025-11-26 12:34:45,091 | INFO     | architecture information:
[2025-11-26 07:35:24] 2025-11-26 12:34:45,092 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:35:24] 2025-11-26 12:34:45,105 | INFO     | cat /etc/os-release:
[2025-11-26 07:35:24] NAME="CentOS Linux"
[2025-11-26 07:35:24] VERSION="7 (Core)"
[2025-11-26 07:35:24] ID="centos"
[2025-11-26 07:35:24] ID_LIKE="rhel fedora"
[2025-11-26 07:35:24] VERSION_ID="7"
[2025-11-26 07:35:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:35:24] ANSI_COLOR="0;31"
[2025-11-26 07:35:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:35:24] HOME_URL="https://www.centos.org/"
[2025-11-26 07:35:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:35:24] 
[2025-11-26 07:35:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:35:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:35:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:35:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:35:24] 
[2025-11-26 07:35:24] 2025-11-26 12:34:45,106 | INFO     | ***************************************
[2025-11-26 07:35:24] 2025-11-26 12:34:45,609 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 07:35:24] 2025-11-26 12:34:45,628 | INFO     | sufficient remaining disk space (24553455616 B)
[2025-11-26 07:35:24] 2025-11-26 12:34:45,628 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:35:24] 2025-11-26 12:34:45,628 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:35:24] 2025-11-26 12:34:45,629 | INFO     | update_server=False
[2025-11-26 07:35:24] 2025-11-26 12:34:45,629 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:35:24] 2025-11-26 12:34:45,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:35:24] 2025-11-26 12:34:45,629 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:35:24] 2025-11-26 12:34:45,630 | INFO     | aborting loop
[2025-11-26 07:35:24] 2025-11-26 12:34:45,940 | INFO     | all data control threads have been joined
[2025-11-26 07:35:24] 2025-11-26 12:34:46,634 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:46,635 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:46,636 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:46,747 | INFO     | all payload control threads have been joined
[2025-11-26 07:35:24] 2025-11-26 12:34:46,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:35:24] 2025-11-26 12:34:46,864 | INFO     | all job control threads have been joined
[2025-11-26 07:35:24] 2025-11-26 12:34:46,897 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:46,946 | INFO     | [data] control thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:46,989 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:35:24] 2025-11-26 12:34:47,280 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,380 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,434 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,511 | INFO     | [job] validate thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,585 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,752 | INFO     | [payload] control thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,765 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:47,869 | INFO     | [job] control thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:48,843 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:50,996 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:34:56,087 | INFO     | job.realtimelogging is not enabled
[2025-11-26 07:35:24] 2025-11-26 12:34:57,093 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:35:24] 2025-11-26 12:35:16,647 | INFO     | PID=2282 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-26 07:35:24] 2025-11-26 12:35:16,648 | INFO     | .. there are 3 such processes running
[2025-11-26 07:35:24] 2025-11-26 12:35:16,649 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:35:24] 2025-11-26 12:35:16,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:35:24] 2025-11-26 12:35:16,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:35:24] 2025-11-26 12:35:19,560 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:35:24] 2025-11-26 12:35:19,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461151770432)>', '<ExcThread(monitor, started 140460572002048)>']
[2025-11-26 07:35:24] 2025-11-26 12:35:19,664 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:35:24] 2025-11-26 12:35:19,665 | INFO     | [monitor] control thread has ended
[2025-11-26 07:35:24] 2025-11-26 12:35:24,590 | INFO     | all workflow threads have been joined
[2025-11-26 07:35:24] 2025-11-26 12:35:24,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:35:24] 2025-11-26 12:35:24,591 | INFO     | traces error code: 0
[2025-11-26 07:35:24] 2025-11-26 12:35:24,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:35:24] 2025-11-26 12:35:24,700 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:35:24] 2025-11-26 12:35:24,702 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:35:24] 2025-11-26 12:35:24,704 [wrapper] pilotpid: 2282
[2025-11-26 07:35:24] 2025-11-26 12:35:24,707 [wrapper] Pilot exit status: 0
[2025-11-26 07:35:24] 2025-11-26 12:35:24,715 [wrapper] pandaids: 6895385398 6895385398
[2025-11-26 07:35:24] 2025-11-26 12:35:24,744 [wrapper] cleanup supervisor_pilot 30638 2284
[2025-11-26 07:35:24] 2025-11-26 12:35:24,746 [wrapper] Test setup, not cleaning
[2025-11-26 07:35:24] 2025-11-26 12:35:24,748 [wrapper] apfmon messages muted
[2025-11-26 07:35:24] 2025-11-26 12:35:24,751 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:35:24] 2025-11-26 12:35:24,754 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:35:24]  *** Error codes and diagnostics ***
[2025-11-26 07:35:24]     "exeErrorCode": 0,
[2025-11-26 07:35:24]     "exeErrorDiag": "",
[2025-11-26 07:35:24]     "pilotErrorCode": 0,
[2025-11-26 07:35:24]     "pilotErrorDiag": "",
[2025-11-26 07:35:24]  *** Listing of results directory ***
[2025-11-26 07:35:24] total 1726732
[2025-11-26 07:35:24] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 07:35:24] -rwx------ 1 boincer umatlas     36292 Nov 24 00:10 runpilot2-wrapper.sh
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 00:10 queuedata.json
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas       100 Nov 24 23:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:35:24] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 23:24 run_atlas
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas       105 Nov 24 23:24 job.xml
[2025-11-26 07:35:24] -rw-r--r-- 3 boincer umatlas 409452327 Nov 24 23:24 EVNT.47483658._002020.pool.root.1
[2025-11-26 07:35:24] -rw-r--r-- 3 boincer umatlas 409452327 Nov 24 23:24 ATLAS.root_0
[2025-11-26 07:35:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 23:24 start_atlas.sh
[2025-11-26 07:35:24] drwxrwx--x 2 boincer umatlas      4096 Nov 24 23:24 shared
[2025-11-26 07:35:24] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 23:24 input.tar.gz
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas         0 Nov 24 23:24 boinc_lockfile
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas      2784 Nov 25 12:11 pandaJob.out
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas        57 Nov 25 12:11 setup.sh.local
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas    991543 Nov 25 12:11 agis_schedconf.cvmfs.json
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas       534 Nov 26 07:21 boinc_task_state.xml
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas      5955 Nov 26 07:30 init_data.xml
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas 921411574 Nov 26 07:33 HITS.47556161._000037.pool.root.1
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas      1077 Nov 26 07:34 memory_monitor_summary.json
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas   1516240 Nov 26 07:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas   2314090 Nov 26 07:34 log.47556161._000037.job.log.tgz.1
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas      8676 Nov 26 07:34 heartbeat.json
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas        96 Nov 26 07:35 pilot_heartbeat.json
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 07:35 boinc_mmap_file
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas        30 Nov 26 07:35 wrapper_checkpoint.txt
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas      4892 Nov 26 07:35 pilotlog.txt
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas   9655251 Nov 26 07:35 log.47556161._000037.job.log.1
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas       353 Nov 26 07:35 output.list
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas       620 Nov 26 07:35 runtime_log
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas  11991040 Nov 26 07:35 result.tar.gz
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas      9428 Nov 26 07:35 runtime_log.err
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas       793 Nov 26 07:35 ps3KDmC1dh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmmvIKDmEbzWVo.diag
[2025-11-26 07:35:24] -rw-r--r-- 1 boincer umatlas     23407 Nov 26 07:35 stderr.txt
[2025-11-26 07:35:24] HITS file was successfully produced:
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas 921411574 Nov 26 07:33 shared/HITS.pool.root.1
[2025-11-26 07:35:24]  *** Contents of shared directory: ***
[2025-11-26 07:35:24] total 1311984
[2025-11-26 07:35:24] -rw-r--r-- 3 boincer umatlas 409452327 Nov 24 23:24 ATLAS.root_0
[2025-11-26 07:35:24] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 23:24 start_atlas.sh
[2025-11-26 07:35:24] -rw-r--r-- 2 boincer umatlas    590102 Nov 24 23:24 input.tar.gz
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas 921411574 Nov 26 07:33 HITS.pool.root.1
[2025-11-26 07:35:24] -rw------- 1 boincer umatlas  11991040 Nov 26 07:35 result.tar.gz
07:35:26 (22698): run_atlas exited; CPU time 545033.411465
07:35:26 (22698): called boinc_finish(0)

</stderr_txt>
]]>

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