Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:54:09 (221101): wrapper (7.7.26015): starting
21:54:09 (221101): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 21:54:09] Arguments: --nthreads 8
[2025-11-25 21:54:09] Threads: 8
[2025-11-25 21:54:09] Checking for CVMFS
[2025-11-25 21:54:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 21:54:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 21:54:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 21:54:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 21:54:10] 2.13.3.0 11160 29476 341944 153305 0 397 28036622 32935937 29878 16776704 0 105513736 99.371 170500930 41246 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 21:54:10] CVMFS is ok
[2025-11-25 21:54:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 21:54:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 21:54:10] Further information can be found at the LHC@home message board.
[2025-11-25 21:54:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 21:54:10] Checking for apptainer binary...
[2025-11-25 21:54:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 21:54:10] Running /usr/bin/apptainer --version
[2025-11-25 21:54:10] apptainer version 1.4.4-1.el9
[2025-11-25 21:54:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 21:54:10] c6-2-29-2.aglt2.org
[2025-11-25 21:54:10] apptainer works
[2025-11-25 21:54:10] Set ATHENA_PROC_NUMBER=8
[2025-11-25 21:54:10] Set ATHENA_CORE_NUMBER=8
[2025-11-25 21:54:10] Starting ATLAS job with PandaID=6895384340
[2025-11-25 21:54:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:13:45 (347066): wrapper (7.7.26015): starting
22:13:45 (347066): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 22:13:45] Arguments: --nthreads 8
[2025-11-25 22:13:45] Threads: 8
[2025-11-25 22:13:45] This job has been restarted, cleaning up previous attempt
[2025-11-25 22:13:45] Checking for CVMFS
[2025-11-25 22:13:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 22:13:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 22:13:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 22:13:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 22:13:46] 2.13.3.0 11160 29495 338960 153306 1 361 29228747 32935937 27380 16776704 0 105722272 99.371 170887739 41222 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 22:13:46] CVMFS is ok
[2025-11-25 22:13:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 22:13:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 22:13:46] Further information can be found at the LHC@home message board.
[2025-11-25 22:13:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 22:13:46] Checking for apptainer binary...
[2025-11-25 22:13:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 22:13:46] Running /usr/bin/apptainer --version
[2025-11-25 22:13:46] apptainer version 1.4.4-1.el9
[2025-11-25 22:13:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 22:13:46] c6-2-29-2.aglt2.org
[2025-11-25 22:13:46] apptainer works
[2025-11-25 22:13:46] Set ATHENA_PROC_NUMBER=8
[2025-11-25 22:13:46] Set ATHENA_CORE_NUMBER=8
[2025-11-25 22:13:46] Starting ATLAS job with PandaID=6895384340
[2025-11-25 22:13:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:16:10]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:16:10] 2025-11-27 00:15:30,833 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,732 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 20:16:10] 2025-11-27 00:15:31,741 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3130.8228571428563
[2025-11-26 20:16:10] 2025-11-27 00:15:31,750 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895384340/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,751 | INFO     | extracted standard info from prmon json
[2025-11-26 20:16:10] 2025-11-27 00:15:31,751 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:16:10] 2025-11-27 00:15:31,751 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:16:10] 2025-11-27 00:15:31,769 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:16:10] 2025-11-27 00:15:31,771 | INFO     | sum of square deviations: 592667096151.5005
[2025-11-26 20:16:10] 2025-11-27 00:15:31,797 | INFO     | sum of deviations: 2897229795987.8667
[2025-11-26 20:16:10] 2025-11-27 00:15:31,797 | INFO     | mean x: 1764164681.40693
[2025-11-26 20:16:10] 2025-11-27 00:15:31,797 | INFO     | mean y: 2992273.7606768734
[2025-11-26 20:16:10] 2025-11-27 00:15:31,797 | INFO     | intersect: -8621057404.703423
[2025-11-26 20:16:10] 2025-11-27 00:15:31,799 | INFO     | chi2: 6.355495562900664
[2025-11-26 20:16:10] 2025-11-27 00:15:31,800 | INFO     | sum of square deviations: 585533529202.4166
[2025-11-26 20:16:10] 2025-11-27 00:15:31,825 | INFO     | sum of deviations: 3355722235572.0024
[2025-11-26 20:16:10] 2025-11-27 00:15:31,826 | INFO     | mean x: 1764164528.9166667
[2025-11-26 20:16:10] 2025-11-27 00:15:31,826 | INFO     | mean y: 3002074.3106796117
[2025-11-26 20:16:10] 2025-11-27 00:15:31,826 | INFO     | intersect: -10107513962.161297
[2025-11-26 20:16:10] 2025-11-27 00:15:31,827 | INFO     | chi2: 2.891666610834245
[2025-11-26 20:16:10] 2025-11-27 00:15:31,827 | INFO     | current chi2=2.891666610834245 (change=54.50131964981688 %)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,829 | INFO     | sum of square deviations: 578457376554.9487
[2025-11-26 20:16:10] 2025-11-27 00:15:31,853 | INFO     | sum of deviations: 3522135455707.6836
[2025-11-26 20:16:10] 2025-11-27 00:15:31,853 | INFO     | mean x: 1764164376.4256701
[2025-11-26 20:16:10] 2025-11-27 00:15:31,853 | INFO     | mean y: 3005657.9528838345
[2025-11-26 20:16:10] 2025-11-27 00:15:31,853 | INFO     | intersect: -10738712144.854052
[2025-11-26 20:16:10] 2025-11-27 00:15:31,855 | INFO     | chi2: 2.259996808293866
[2025-11-26 20:16:10] 2025-11-27 00:15:31,855 | INFO     | current chi2=2.259996808293866 (change=21.844489270432945 %)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,855 | INFO     | right removable region: 1230
[2025-11-26 20:16:10] 2025-11-27 00:15:31,856 | INFO     | sum of square deviations: 585531858296.0787
[2025-11-26 20:16:10] 2025-11-27 00:15:31,881 | INFO     | sum of deviations: 2592937606305.2563
[2025-11-26 20:16:10] 2025-11-27 00:15:31,881 | INFO     | mean x: 1764164833.9150486
[2025-11-26 20:16:10] 2025-11-27 00:15:31,881 | INFO     | mean y: 2998769.8786407765
[2025-11-26 20:16:10] 2025-11-27 00:15:31,881 | INFO     | intersect: -7809333346.244289
[2025-11-26 20:16:10] 2025-11-27 00:15:31,883 | INFO     | chi2: 4.611405378579963
[2025-11-26 20:16:10] 2025-11-27 00:15:31,883 | INFO     | current chi2=4.611405378579963 (change=27.442237462985396 %)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,884 | INFO     | sum of square deviations: 578454412097.8694
[2025-11-26 20:16:10] 2025-11-27 00:15:31,908 | INFO     | sum of deviations: 2487054893532.3394
[2025-11-26 20:16:10] 2025-11-27 00:15:31,909 | INFO     | mean x: 1764164986.4199839
[2025-11-26 20:16:10] 2025-11-27 00:15:31,909 | INFO     | mean y: 3001050.8155970755
[2025-11-26 20:16:10] 2025-11-27 00:15:31,909 | INFO     | intersect: -7581996263.945821
[2025-11-26 20:16:10] 2025-11-27 00:15:31,910 | INFO     | chi2: 4.519678694193007
[2025-11-26 20:16:10] 2025-11-27 00:15:31,910 | INFO     | current chi2=4.519678694193007 (change=1.989126456178154 %)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,910 | INFO     | left removable region: 20
[2025-11-26 20:16:10] 2025-11-27 00:15:31,912 | INFO     | sum of square deviations: 549354449158.12354
[2025-11-26 20:16:10] 2025-11-27 00:15:31,945 | INFO     | time since job start (75696s) is within the limit (172800.0s)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,953 | INFO     | sum of deviations: 2953341264569.3813
[2025-11-26 20:16:10] 2025-11-27 00:15:31,954 | INFO     | mean x: 1764164955.9512396
[2025-11-26 20:16:10] 2025-11-27 00:15:31,954 | INFO     | mean y: 3018194.311570248
[2025-11-26 20:16:10] 2025-11-27 00:15:31,954 | INFO     | intersect: -9481170328.967953
[2025-11-26 20:16:10] 2025-11-27 00:15:31,955 | INFO     | chi2: 0.34398237273230997
[2025-11-26 20:16:10] 2025-11-27 00:15:31,955 | INFO     | current memory leak: 5.38 B/s (using 1210 data points, chi2=0.34)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,961 | INFO     | could have reported an average CPU frequency of 3124 MHz (45 samples)
[2025-11-26 20:16:10] 2025-11-27 00:15:31,961 | INFO     | ..............................
[2025-11-26 20:16:10] 2025-11-27 00:15:31,961 | INFO     | . Timing measurements:
[2025-11-26 20:16:10] 2025-11-27 00:15:31,961 | INFO     | . get job = 0 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,961 | INFO     | . initial setup = 0 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,961 | INFO     | . payload setup = 5 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,962 | INFO     | . stage-in = 0 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,962 | INFO     | . payload execution = 75656 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,962 | INFO     | . stage-out = 3 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,962 | INFO     | . log creation = 0 s
[2025-11-26 20:16:10] 2025-11-27 00:15:31,962 | INFO     | ..............................
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | 
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | job summary report
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | --------------------------------------------------
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | PanDA job id: 6895384340
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | task id: 47556149
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | errors: (none)
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:16:10] 2025-11-27 00:15:32,068 | INFO     | pilot state: finished 
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | transexitcode: 0
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | exeerrorcode: 0
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | exeerrordiag: 
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | exitcode: 0
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | exitmsg: OK
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | cpuconsumptiontime: 242448 s
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | nevents: 1000
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | neventsw: 0
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | pid: 400080
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | pgrp: 400080
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | corecount: 8
[2025-11-26 20:16:10] 2025-11-27 00:15:32,069 | INFO     | event service: False
[2025-11-26 20:16:10] 2025-11-27 00:15:32,070 | INFO     | sizes: {0: 2284264, 4: 2284526, 11: 2284554, 75665: 2343767, 75670: 2352761, 75672: 2352817, 75683: 2353191}
[2025-11-26 20:16:10] 2025-11-27 00:15:32,070 | INFO     | --------------------------------------------------
[2025-11-26 20:16:10] 2025-11-27 00:15:32,070 | INFO     | 
[2025-11-26 20:16:10] 2025-11-27 00:15:32,070 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 20:16:10] 2025-11-27 00:15:32,196 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,196 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,198 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:16:10] 2025-11-27 00:15:32,198 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,198 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:16:10] 2025-11-27 00:15:32,198 | INFO     | job 6895384340 has completed (purged errors)
[2025-11-26 20:16:10] 2025-11-27 00:15:32,198 | INFO     | overall cleanup function is called
[2025-11-26 20:16:10] 2025-11-27 00:15:33,223 | INFO     | --- collectZombieJob: --- 10, [400080]
[2025-11-26 20:16:10] 2025-11-27 00:15:33,223 | INFO     | zombie collector waiting for pid 400080
[2025-11-26 20:16:10] 2025-11-27 00:15:33,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:16:10] 2025-11-27 00:15:33,224 | INFO     | collected zombie processes
[2025-11-26 20:16:10] 2025-11-27 00:15:33,224 | INFO     | will attempt to kill all subprocesses of pid=400080
[2025-11-26 20:16:10] 2025-11-27 00:15:34,121 | INFO     | PID=365643 has CPU usage=17.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:16:10] 2025-11-27 00:15:34,122 | INFO     | .. there are 47 such processes running
[2025-11-26 20:16:10] 2025-11-27 00:15:34,327 | INFO     | process IDs to be killed: [400080] (in reverse order)
[2025-11-26 20:16:10] 2025-11-27 00:15:34,473 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:16:10] 2025-11-27 00:15:34,474 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:16:10] 2025-11-27 00:15:34,492 | INFO     | did not find any defunct processes belonging to 400080
[2025-11-26 20:16:10] 2025-11-27 00:15:34,509 | INFO     | did not find any defunct processes belonging to 400080
[2025-11-26 20:16:10] 2025-11-27 00:15:34,510 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:16:10] 2025-11-27 00:15:34,511 | INFO     | ready for new job
[2025-11-26 20:16:10] 2025-11-27 00:15:34,511 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:16:10] 2025-11-27 00:15:34,515 | INFO     | ***************************************
[2025-11-26 20:16:10] 2025-11-27 00:15:34,515 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:16:10] 2025-11-27 00:15:34,515 | INFO     | ***************************************
[2025-11-26 20:16:10] 2025-11-27 00:15:34,516 | INFO     | 
[2025-11-26 20:16:10] 2025-11-27 00:15:34,518 | INFO     | architecture information:
[2025-11-26 20:16:10] 2025-11-27 00:15:34,519 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:16:10] 2025-11-27 00:15:34,534 | INFO     | cat /etc/os-release:
[2025-11-26 20:16:10] NAME="CentOS Linux"
[2025-11-26 20:16:10] VERSION="7 (Core)"
[2025-11-26 20:16:10] ID="centos"
[2025-11-26 20:16:10] ID_LIKE="rhel fedora"
[2025-11-26 20:16:10] VERSION_ID="7"
[2025-11-26 20:16:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:16:10] ANSI_COLOR="0;31"
[2025-11-26 20:16:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:16:10] HOME_URL="https://www.centos.org/"
[2025-11-26 20:16:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:16:10] 
[2025-11-26 20:16:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:16:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:16:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:16:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:16:10] 
[2025-11-26 20:16:10] 2025-11-27 00:15:34,535 | INFO     | ***************************************
[2025-11-26 20:16:10] 2025-11-27 00:15:35,038 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 20:16:10] 2025-11-27 00:15:35,101 | INFO     | sufficient remaining disk space (65982693376 B)
[2025-11-26 20:16:10] 2025-11-27 00:15:35,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:16:10] 2025-11-27 00:15:35,101 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:16:10] 2025-11-27 00:15:35,101 | INFO     | update_server=False
[2025-11-26 20:16:10] 2025-11-27 00:15:35,102 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:16:10] 2025-11-27 00:15:35,102 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-26 20:16:10] 2025-11-27 00:15:35,102 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:16:10] 2025-11-27 00:15:35,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:16:10] 2025-11-27 00:15:35,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:16:10] 2025-11-27 00:15:35,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:16:10] 2025-11-27 00:15:35,103 | INFO     | aborting loop
[2025-11-26 20:16:10] 2025-11-27 00:15:35,103 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:16:10] 2025-11-27 00:15:35,185 | INFO     | all payload control threads have been joined
[2025-11-26 20:16:10] 2025-11-27 00:15:35,468 | INFO     | all data control threads have been joined
[2025-11-26 20:16:10] 2025-11-27 00:15:35,910 | INFO     | all job control threads have been joined
[2025-11-26 20:16:10] 2025-11-27 00:15:36,108 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,108 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,141 | INFO     | [job] validate thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,192 | INFO     | [payload] control thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,192 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,264 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,271 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,359 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:16:10] 2025-11-27 00:15:36,493 | INFO     | [data] control thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,576 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,627 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,739 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:36,917 | INFO     | [job] control thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:37,096 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:16:10] 2025-11-27 00:15:37,110 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:37,435 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:38,102 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:15:40,371 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:16:10] 2025-11-27 00:16:12,424 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:16:10] 2025-11-27 00:16:13,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885170960192)>', '<ExcThread(monitor, started 139884467582720)>']
[2025-11-26 20:16:10] 2025-11-27 00:16:14,355 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:16:10] 2025-11-27 00:16:14,355 | INFO     | [monitor] control thread has ended
[2025-11-26 20:16:10] 2025-11-27 00:16:18,630 | INFO     | all workflow threads have been joined
[2025-11-26 20:16:10] 2025-11-27 00:16:18,630 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:16:10] 2025-11-27 00:16:18,655 | INFO     | traces error code: 0
[2025-11-26 20:16:10] 2025-11-27 00:16:18,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:16:10] 2025-11-27 00:16:18,984 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:16:10] 2025-11-27 00:16:19,000 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:16:10] 2025-11-27 00:16:19,026 [wrapper] pilotpid: 365643
[2025-11-26 20:16:10] 2025-11-27 00:16:19,033 [wrapper] Pilot exit status: 0
[2025-11-26 20:16:10] 2025-11-27 00:16:19,089 [wrapper] pandaids: 6895384340 6895384340
[2025-11-26 20:16:10] 2025-11-27 00:16:19,193 [wrapper] cleanup supervisor_pilot 1274292 365645
[2025-11-26 20:16:10] 2025-11-27 00:16:19,197 [wrapper] Test setup, not cleaning
[2025-11-26 20:16:10] 2025-11-27 00:16:19,200 [wrapper] apfmon messages muted
[2025-11-26 20:16:10] 2025-11-27 00:16:19,204 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:16:10] 2025-11-27 00:16:19,211 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:16:10]  *** Error codes and diagnostics ***
[2025-11-26 20:16:10]     "exeErrorCode": 0,
[2025-11-26 20:16:10]     "exeErrorDiag": "",
[2025-11-26 20:16:10]     "pilotErrorCode": 0,
[2025-11-26 20:16:10]     "pilotErrorDiag": "",
[2025-11-26 20:16:10]  *** Listing of results directory ***
[2025-11-26 20:16:10] total 1723764
[2025-11-26 20:16:10] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 20:16:10] -rwx------. 1 boincer umatlas     36292 Nov 23 23:58 runpilot2-wrapper.sh
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 23:58 queuedata.json
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas       100 Nov 25 21:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:16:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 21:54 run_atlas
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas       105 Nov 25 21:54 job.xml
[2025-11-26 20:16:10] -rw-r--r--. 3 boincer umatlas 411071849 Nov 25 21:54 EVNT.47483658._001224.pool.root.1
[2025-11-26 20:16:10] -rw-r--r--. 3 boincer umatlas 411071849 Nov 25 21:54 ATLAS.root_0
[2025-11-26 20:16:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:54 start_atlas.sh
[2025-11-26 20:16:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 21:54 shared
[2025-11-26 20:16:10] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 21:54 input.tar.gz
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas         0 Nov 25 21:54 boinc_lockfile
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 22:13 pandaJob.out
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas        57 Nov 25 22:13 setup.sh.local
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas    991877 Nov 25 22:13 agis_schedconf.cvmfs.json
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:03 boinc_task_state.xml
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas 915845693 Nov 26 19:14 HITS.47556149._002110.pool.root.1
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas        96 Nov 26 19:15 pilot_heartbeat.json
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas      1057 Nov 26 19:15 memory_monitor_summary.json
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas   2287218 Nov 26 19:15 log.47556149._002110.job.log.tgz.1
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas      8619 Nov 26 19:15 heartbeat.json
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas      4552 Nov 26 19:16 pilotlog.txt
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas   9319702 Nov 26 19:16 log.47556149._002110.job.log.1
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas       353 Nov 26 19:16 output.list
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:16 runtime_log
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas  11622400 Nov 26 19:16 result.tar.gz
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas      9433 Nov 26 19:16 runtime_log.err
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas       786 Nov 26 19:16 FgiKDmBqdh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAvIKDmTQwGYn.diag
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 20:09 init_data.xml
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:16 wrapper_checkpoint.txt
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:16 boinc_mmap_file
[2025-11-26 20:16:10] -rw-r--r--. 1 boincer umatlas     23514 Nov 26 20:16 stderr.txt
[2025-11-26 20:16:10] HITS file was successfully produced:
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas 915845693 Nov 26 19:14 shared/HITS.pool.root.1
[2025-11-26 20:16:10]  *** Contents of shared directory: ***
[2025-11-26 20:16:10] total 1307780
[2025-11-26 20:16:10] -rw-r--r--. 3 boincer umatlas 411071849 Nov 25 21:54 ATLAS.root_0
[2025-11-26 20:16:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 21:54 start_atlas.sh
[2025-11-26 20:16:10] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 21:54 input.tar.gz
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas 915845693 Nov 26 19:14 HITS.pool.root.1
[2025-11-26 20:16:10] -rw-------. 1 boincer umatlas  11622400 Nov 26 19:16 result.tar.gz
20:16:12 (347066): run_atlas exited; CPU time 244955.208712
20:16:12 (347066): called boinc_finish(0)

</stderr_txt>
]]>

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