Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:57 (708537): wrapper (7.7.26015): starting
00:01:57 (708537): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:01:57] Arguments: --nthreads 9
[2025-11-25 00:01:57] Threads: 9
[2025-11-25 00:01:57] Checking for CVMFS
[2025-11-25 00:01:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:00] 2.13.3.0 12085 26730 390408 153270 3 541 14063797 25181185 31842 16776704 0 147315785 99.586 155534504 23025 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:02:00] CVMFS is ok
[2025-11-25 00:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:00] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:00] Checking for apptainer binary...
[2025-11-25 00:02:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:00] Running /usr/bin/apptainer --version
[2025-11-25 00:02:00] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:01] c-16-38.aglt2.org
[2025-11-25 00:02:01] apptainer works
[2025-11-25 00:02:01] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:02:01] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:02:01] Starting ATLAS job with PandaID=6895385392
[2025-11-25 00:02:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 23:32:57]  *** The last 200 lines of the pilot log: ***
[2025-11-25 23:32:57] 2025-11-26 04:31:34,315 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 23:32:57] 2025-11-26 04:31:34,330 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2809.416895833334
[2025-11-25 23:32:57] 2025-11-26 04:31:34,355 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895385392/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,355 | INFO     | extracted standard info from prmon json
[2025-11-25 23:32:57] 2025-11-26 04:31:34,356 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 23:32:57] 2025-11-26 04:31:34,356 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 23:32:57] 2025-11-26 04:31:34,438 | INFO     | fitting pss+swap vs Time
[2025-11-25 23:32:57] 2025-11-26 04:31:34,440 | INFO     | sum of square deviations: 820224072973.6797
[2025-11-25 23:32:57] 2025-11-26 04:31:34,531 | INFO     | sum of deviations: 5759510736077.711
[2025-11-25 23:32:57] 2025-11-26 04:31:34,531 | INFO     | mean x: 1764089277.6008677
[2025-11-25 23:32:57] 2025-11-26 04:31:34,531 | INFO     | mean y: 3067063.0701373825
[2025-11-25 23:32:57] 2025-11-26 04:31:34,532 | INFO     | intersect: -12384146953.834005
[2025-11-25 23:32:57] 2025-11-26 04:31:34,533 | INFO     | chi2: 15.288168183124197
[2025-11-25 23:32:57] 2025-11-26 04:31:34,535 | INFO     | sum of square deviations: 811360479703.3191
[2025-11-25 23:32:57] 2025-11-26 04:31:34,611 | INFO     | sum of deviations: 6268199633529.885
[2025-11-25 23:32:57] 2025-11-26 04:31:34,612 | INFO     | mean x: 1764089125.1066763
[2025-11-25 23:32:57] 2025-11-26 04:31:34,612 | INFO     | mean y: 3075816.3272859217
[2025-11-25 23:32:57] 2025-11-26 04:31:34,612 | INFO     | intersect: -13625469182.008167
[2025-11-25 23:32:57] 2025-11-26 04:31:34,614 | INFO     | chi2: 11.942456328887383
[2025-11-25 23:32:57] 2025-11-26 04:31:34,614 | INFO     | current chi2=11.942456328887383 (change=21.884321353358533 %)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,614 | INFO     | right removable region: 1377
[2025-11-25 23:32:57] 2025-11-26 04:31:34,616 | INFO     | sum of square deviations: 811359129163.3196
[2025-11-25 23:32:57] 2025-11-26 04:31:34,665 | INFO     | sum of deviations: 5170889478458.978
[2025-11-25 23:32:57] 2025-11-26 04:31:34,665 | INFO     | mean x: 1764089430.1066763
[2025-11-25 23:32:57] 2025-11-26 04:31:34,665 | INFO     | mean y: 3077187.9796806965
[2025-11-25 23:32:57] 2025-11-26 04:31:34,666 | INFO     | intersect: -11239677278.351276
[2025-11-25 23:32:57] 2025-11-26 04:31:34,667 | INFO     | chi2: 11.178444769493874
[2025-11-25 23:32:57] 2025-11-26 04:31:34,668 | INFO     | current chi2=11.178444769493874 (change=26.88172555667481 %)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,669 | INFO     | sum of square deviations: 802558279577.8644
[2025-11-25 23:32:57] 2025-11-26 04:31:34,718 | INFO     | sum of deviations: 4645170242473.703
[2025-11-25 23:32:57] 2025-11-26 04:31:34,719 | INFO     | mean x: 1764089582.6125274
[2025-11-25 23:32:57] 2025-11-26 04:31:34,719 | INFO     | mean y: 3086297.6686088857
[2025-11-25 23:32:57] 2025-11-26 04:31:34,719 | INFO     | intersect: -10207382702.189905
[2025-11-25 23:32:57] 2025-11-26 04:31:34,721 | INFO     | chi2: 8.016285526268833
[2025-11-25 23:32:57] 2025-11-26 04:31:34,721 | INFO     | current chi2=8.016285526268833 (change=28.28800703882007 %)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,723 | INFO     | sum of square deviations: 793821877077.4408
[2025-11-25 23:32:57] 2025-11-26 04:31:34,747 | INFO     | time since job start (84513s) is within the limit (172800.0s)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,793 | INFO     | sum of deviations: 4398739886249.92
[2025-11-25 23:32:57] 2025-11-26 04:31:34,794 | INFO     | mean x: 1764089735.1133041
[2025-11-25 23:32:57] 2025-11-26 04:31:34,794 | INFO     | mean y: 3090595.9166666665
[2025-11-25 23:32:57] 2025-11-26 04:31:34,794 | INFO     | intersect: -9772114780.553383
[2025-11-25 23:32:57] 2025-11-26 04:31:34,796 | INFO     | chi2: 7.338167271693752
[2025-11-25 23:32:57] 2025-11-26 04:31:34,796 | INFO     | current chi2=7.338167271693752 (change=8.459257749152425 %)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,796 | INFO     | left removable region: 30
[2025-11-25 23:32:57] 2025-11-26 04:31:34,798 | INFO     | sum of square deviations: 757823509928.5983
[2025-11-25 23:32:57] 2025-11-26 04:31:34,850 | INFO     | sum of deviations: 4609626604475.983
[2025-11-25 23:32:57] 2025-11-26 04:31:34,850 | INFO     | mean x: 1764090009.6095026
[2025-11-25 23:32:57] 2025-11-26 04:31:34,851 | INFO     | mean y: 3108667.172976986
[2025-11-25 23:32:57] 2025-11-26 04:31:34,851 | INFO     | intersect: -10727353154.673155
[2025-11-25 23:32:57] 2025-11-26 04:31:34,852 | INFO     | chi2: 2.922905787195514
[2025-11-25 23:32:57] 2025-11-26 04:31:34,853 | INFO     | current memory leak: 6.08 B/s (using 1347 data points, chi2=2.92)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,854 | INFO     | could have reported an average CPU frequency of 2810 MHz (50 samples)
[2025-11-25 23:32:57] 2025-11-26 04:31:34,854 | INFO     | ..............................
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . Timing measurements:
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . get job = 0 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . initial setup = 5 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . payload setup = 50 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . stage-in = 0 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . payload execution = 84378 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . stage-out = 5 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | . log creation = 1 s
[2025-11-25 23:32:57] 2025-11-26 04:31:34,855 | INFO     | ..............................
[2025-11-25 23:32:57] 2025-11-26 04:31:34,871 | INFO     | monitor loop #5155: job 0:6895385392 is in state 'finished'
[2025-11-25 23:32:57] 2025-11-26 04:31:34,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 23:32:57] 2025-11-26 04:31:35,052 | INFO     | 
[2025-11-25 23:32:57] 2025-11-26 04:31:35,052 | INFO     | job summary report
[2025-11-25 23:32:57] 2025-11-26 04:31:35,052 | INFO     | --------------------------------------------------
[2025-11-25 23:32:57] 2025-11-26 04:31:35,052 | INFO     | PanDA job id: 6895385392
[2025-11-25 23:32:57] 2025-11-26 04:31:35,052 | INFO     | task id: 47556161
[2025-11-25 23:32:57] 2025-11-26 04:31:35,052 | INFO     | errors: (none)
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | pilot state: finished 
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | transexitcode: 0
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | exeerrorcode: 0
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | exeerrordiag: 
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | exitcode: 0
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | exitmsg: OK
[2025-11-25 23:32:57] 2025-11-26 04:31:35,053 | INFO     | cpuconsumptiontime: 320488 s
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | nevents: 1000
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | neventsw: 0
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | pid: 742134
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | pgrp: 742134
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | corecount: 9
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | event service: False
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | sizes: {0: 2284022, 1: 2284277, 2: 2284305, 13: 2284305, 24: 2284361, 33: 2284651, 35: 2284835, 84433: 2348966, 84440: 2358021, 84450: 2358211}
[2025-11-25 23:32:57] 2025-11-26 04:31:35,054 | INFO     | --------------------------------------------------
[2025-11-25 23:32:57] 2025-11-26 04:31:35,055 | INFO     | 
[2025-11-25 23:32:57] 2025-11-26 04:31:35,055 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 23:32:57] 2025-11-26 04:31:35,074 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,075 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,075 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,075 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,077 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,077 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 23:32:57] 2025-11-26 04:31:35,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,077 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 23:32:57] 2025-11-26 04:31:35,078 | INFO     | job 6895385392 has completed (purged errors)
[2025-11-25 23:32:57] 2025-11-26 04:31:35,083 | INFO     | overall cleanup function is called
[2025-11-25 23:32:57] 2025-11-26 04:31:36,113 | INFO     | --- collectZombieJob: --- 10, [742134]
[2025-11-25 23:32:57] 2025-11-26 04:31:36,113 | INFO     | zombie collector waiting for pid 742134
[2025-11-25 23:32:57] 2025-11-26 04:31:36,115 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 23:32:57] 2025-11-26 04:31:36,115 | INFO     | collected zombie processes
[2025-11-25 23:32:57] 2025-11-26 04:31:36,116 | INFO     | will attempt to kill all subprocesses of pid=742134
[2025-11-25 23:32:57] 2025-11-26 04:31:36,702 | INFO     | process IDs to be killed: [742134] (in reverse order)
[2025-11-25 23:32:57] 2025-11-26 04:31:36,865 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 23:32:57] 2025-11-26 04:31:36,866 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 23:32:57] 2025-11-26 04:31:36,885 | INFO     | did not find any defunct processes belonging to 742134
[2025-11-25 23:32:57] 2025-11-26 04:31:36,904 | INFO     | did not find any defunct processes belonging to 742134
[2025-11-25 23:32:57] 2025-11-26 04:31:36,906 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 23:32:57] 2025-11-26 04:31:36,906 | INFO     | ready for new job
[2025-11-25 23:32:57] 2025-11-26 04:31:36,906 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 23:32:57] 2025-11-26 04:31:36,913 | INFO     | ***************************************
[2025-11-25 23:32:57] 2025-11-26 04:31:36,913 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 23:32:57] 2025-11-26 04:31:36,914 | INFO     | ***************************************
[2025-11-25 23:32:57] 2025-11-26 04:31:36,915 | INFO     | 
[2025-11-25 23:32:57] 2025-11-26 04:31:36,918 | INFO     | architecture information:
[2025-11-25 23:32:57] 2025-11-26 04:31:36,918 | INFO     | executing command: cat /etc/os-release
[2025-11-25 23:32:57] 2025-11-26 04:31:36,943 | INFO     | cat /etc/os-release:
[2025-11-25 23:32:57] NAME="CentOS Linux"
[2025-11-25 23:32:57] VERSION="7 (Core)"
[2025-11-25 23:32:57] ID="centos"
[2025-11-25 23:32:57] ID_LIKE="rhel fedora"
[2025-11-25 23:32:57] VERSION_ID="7"
[2025-11-25 23:32:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 23:32:57] ANSI_COLOR="0;31"
[2025-11-25 23:32:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 23:32:57] HOME_URL="https://www.centos.org/"
[2025-11-25 23:32:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 23:32:57] 
[2025-11-25 23:32:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 23:32:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 23:32:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 23:32:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 23:32:57] 
[2025-11-25 23:32:57] 2025-11-26 04:31:36,943 | INFO     | ***************************************
[2025-11-25 23:32:57] 2025-11-26 04:31:37,448 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 23:32:57] 2025-11-26 04:31:37,479 | INFO     | sufficient remaining disk space (58184433664 B)
[2025-11-25 23:32:57] 2025-11-26 04:31:37,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 23:32:57] 2025-11-26 04:31:37,479 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 23:32:57] 2025-11-26 04:31:37,479 | INFO     | update_server=False
[2025-11-25 23:32:57] 2025-11-26 04:31:37,480 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 23:32:57] 2025-11-26 04:31:37,631 | INFO     | all payload control threads have been joined
[2025-11-25 23:32:57] 2025-11-26 04:31:38,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 23:32:57] 2025-11-26 04:31:38,273 | INFO     | all data control threads have been joined
[2025-11-25 23:32:57] 2025-11-26 04:31:38,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:32:57] 2025-11-26 04:31:38,389 | INFO     | aborting loop
[2025-11-25 23:32:57] 2025-11-26 04:31:38,485 | INFO     | [job] retrieve thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:38,638 | INFO     | [payload] control thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:38,656 | INFO     | [payload] validate_post thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:38,762 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,060 | INFO     | all job control threads have been joined
[2025-11-25 23:32:57] 2025-11-26 04:31:39,103 | INFO     | [data] copytool_in thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,218 | INFO     | [payload] failed_post thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,249 | INFO     | [job] validate thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,283 | INFO     | [data] control thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,419 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,425 | INFO     | [job] job monitor thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,466 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:39,499 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:40,065 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 23:32:57] 2025-11-26 04:31:40,065 | INFO     | [job] control thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:40,212 | INFO     | [data] copytool_out thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:40,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 23:32:57] 2025-11-26 04:31:41,083 | INFO     | [job] queue monitor thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:31:44,642 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 23:32:57] 2025-11-26 04:32:08,998 | INFO     | PID=716837 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 23:32:57] 2025-11-26 04:32:08,999 | INFO     | .. there are 46 such processes running
[2025-11-25 23:32:57] 2025-11-26 04:32:08,999 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 23:32:57] 2025-11-26 04:32:08,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 23:32:57] 2025-11-26 04:32:08,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 23:32:57] 2025-11-26 04:32:31,023 | INFO     | [monitor] cgroup control has ended
[2025-11-25 23:32:57] 2025-11-26 04:32:32,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033274414912)>', '<ExcThread(monitor, started 140032484558592)>']
[2025-11-25 23:32:57] 2025-11-26 04:32:32,128 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 23:32:57] 2025-11-26 04:32:32,128 | INFO     | [monitor] control thread has ended
[2025-11-25 23:32:57] 2025-11-26 04:32:37,056 | INFO     | all workflow threads have been joined
[2025-11-25 23:32:57] 2025-11-26 04:32:37,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 23:32:57] 2025-11-26 04:32:37,057 | INFO     | traces error code: 0
[2025-11-25 23:32:57] 2025-11-26 04:32:37,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 23:32:57] 2025-11-26 04:32:37,218 [wrapper] ==== pilot stdout END ====
[2025-11-25 23:32:57] 2025-11-26 04:32:37,232 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 23:32:57] 2025-11-26 04:32:37,236 [wrapper] pilotpid: 716837
[2025-11-25 23:32:57] 2025-11-26 04:32:37,242 [wrapper] Pilot exit status: 0
[2025-11-25 23:32:57] 2025-11-26 04:32:37,301 [wrapper] pandaids: 6895385392
[2025-11-25 23:32:57] 2025-11-26 04:32:37,420 [wrapper] cleanup supervisor_pilot 1748398 716838
[2025-11-25 23:32:57] 2025-11-26 04:32:37,424 [wrapper] Test setup, not cleaning
[2025-11-25 23:32:57] 2025-11-26 04:32:37,438 [wrapper] apfmon messages muted
[2025-11-25 23:32:57] 2025-11-26 04:32:37,456 [wrapper] ==== wrapper stdout END ====
[2025-11-25 23:32:57] 2025-11-26 04:32:37,484 [wrapper] ==== wrapper stderr END ====
[2025-11-25 23:32:57]  *** Error codes and diagnostics ***
[2025-11-25 23:32:57]     "exeErrorCode": 0,
[2025-11-25 23:32:57]     "exeErrorDiag": "",
[2025-11-25 23:32:57]     "pilotErrorCode": 0,
[2025-11-25 23:32:57]     "pilotErrorDiag": "",
[2025-11-25 23:32:57]  *** Listing of results directory ***
[2025-11-25 23:32:57] total 1331060
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:07 queuedata.json
[2025-11-25 23:32:57] -rwx------. 1 boincer umatlas     36292 Nov 24 00:09 runpilot2-wrapper.sh
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 23:32:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-25 23:32:57] -rw-r--r--. 2 boincer umatlas 409452327 Nov 25 00:01 EVNT.47483658._002020.pool.root.1
[2025-11-25 23:32:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 23:32:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-25 23:32:57] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:01 input.tar.gz
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas      2780 Nov 25 00:02 pandaJob.out
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-25 23:32:57] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas       533 Nov 25 23:13 boinc_task_state.xml
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas      6615 Nov 25 23:30 init_data.xml
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas 922857471 Nov 25 23:30 HITS.47556161._000031.pool.root.1
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas      1065 Nov 25 23:31 memory_monitor_summary.json
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas   1516240 Nov 25 23:31 agis_ddmendpoints.agis.ALL.json
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas   2570535 Nov 25 23:31 log.47556161._000031.job.log.tgz.1
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas        95 Nov 25 23:31 pilot_heartbeat.json
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas      8635 Nov 25 23:31 heartbeat.json
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas      4823 Nov 25 23:32 pilotlog.txt
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas  10818694 Nov 25 23:32 log.47556161._000031.job.log.1
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas       353 Nov 25 23:32 output.list
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas       620 Nov 25 23:32 runtime_log
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas  13404160 Nov 25 23:32 result.tar.gz
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 23:32 runtime_log.err
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas       661 Nov 25 23:32 hBJKDmD0dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm1RLKDmJIQvZm.diag
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas        29 Nov 25 23:32 wrapper_checkpoint.txt
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 23:32 boinc_mmap_file
[2025-11-25 23:32:57] -rw-r--r--. 1 boincer umatlas     21354 Nov 25 23:32 stderr.txt
[2025-11-25 23:32:57] HITS file was successfully produced:
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas 922857471 Nov 25 23:30 shared/HITS.pool.root.1
[2025-11-25 23:32:57]  *** Contents of shared directory: ***
[2025-11-25 23:32:57] total 1314780
[2025-11-25 23:32:57] -rw-r--r--. 2 boincer umatlas 409452327 Nov 25 00:01 ATLAS.root_0
[2025-11-25 23:32:57] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-25 23:32:57] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:01 input.tar.gz
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas 922857471 Nov 25 23:30 HITS.pool.root.1
[2025-11-25 23:32:57] -rw-------. 1 boincer umatlas  13404160 Nov 25 23:32 result.tar.gz
23:32:59 (708537): run_atlas exited; CPU time 324406.555626
23:32:59 (708537): called boinc_finish(0)

</stderr_txt>
]]>

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