Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:45 (1757442): wrapper (7.7.26015): starting
00:01:45 (1757442): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:01:45] Arguments: --nthreads 9
[2025-11-25 00:01:45] Threads: 9
[2025-11-25 00:01:45] Checking for CVMFS
[2025-11-25 00:01:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:46] 2.13.3.0 9393 28116 333720 153270 3 122 25464517 32935937 23893 16776704 0 102913363 99.527 124310067 39388 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:01:46] CVMFS is ok
[2025-11-25 00:01:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:46] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:46] Checking for apptainer binary...
[2025-11-25 00:01:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:46] Running /usr/bin/apptainer --version
[2025-11-25 00:01:46] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:47] c6-6-39-1.aglt2.org
[2025-11-25 00:01:47] apptainer works
[2025-11-25 00:01:47] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:01:47] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:01:47] Starting ATLAS job with PandaID=6895384676
[2025-11-25 00:01:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 03:39:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 03:39:06] 2025-11-26 08:20:55,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 03:39:06] 2025-11-26 08:20:55,633 | INFO     | sum of deviations: 6697766937038.514
[2025-11-26 03:39:06] 2025-11-26 08:20:55,633 | INFO     | mean x: 1764096110.210559
[2025-11-26 03:39:06] 2025-11-26 08:20:55,633 | INFO     | mean y: 3037651.157763975
[2025-11-26 03:39:06] 2025-11-26 08:20:55,633 | INFO     | intersect: -9127656497.35506
[2025-11-26 03:39:06] 2025-11-26 08:20:55,664 | INFO     | time since job start (98310s) is within the limit (172800.0s)
[2025-11-26 03:39:06] 2025-11-26 08:20:55,664 | INFO     | chi2: 12.892187293993626
[2025-11-26 03:39:06] 2025-11-26 08:20:55,666 | INFO     | sum of square deviations: 1282024055974.4448
[2025-11-26 03:39:06] 2025-11-26 08:20:55,933 | INFO     | sum of deviations: 7293427937527.334
[2025-11-26 03:39:06] 2025-11-26 08:20:55,933 | INFO     | mean x: 1764095957.7158878
[2025-11-26 03:39:06] 2025-11-26 08:20:55,933 | INFO     | mean y: 3045208.9283489096
[2025-11-26 03:39:06] 2025-11-26 08:20:55,933 | INFO     | intersect: -10032887176.680931
[2025-11-26 03:39:06] 2025-11-26 08:20:55,943 | INFO     | chi2: 9.369204267604989
[2025-11-26 03:39:06] 2025-11-26 08:20:55,943 | INFO     | current chi2=9.369204267604989 (change=27.32649585404308 %)
[2025-11-26 03:39:06] 2025-11-26 08:20:55,945 | INFO     | sum of square deviations: 1270080448719.6777
[2025-11-26 03:39:06] 2025-11-26 08:20:56,110 | INFO     | sum of deviations: 7923036210618.246
[2025-11-26 03:39:06] 2025-11-26 08:20:56,110 | INFO     | mean x: 1764095805.22125
[2025-11-26 03:39:06] 2025-11-26 08:20:56,110 | INFO     | mean y: 3053247.010625
[2025-11-26 03:39:06] 2025-11-26 08:20:56,110 | INFO     | intersect: -11001757478.05598
[2025-11-26 03:39:06] 2025-11-26 08:20:56,121 | INFO     | chi2: 5.553530332061355
[2025-11-26 03:39:06] 2025-11-26 08:20:56,121 | INFO     | current chi2=5.553530332061355 (change=40.72569907283086 %)
[2025-11-26 03:39:06] 2025-11-26 08:20:56,131 | INFO     | sum of square deviations: 1258211066511.7212
[2025-11-26 03:39:06] 2025-11-26 08:20:56,435 | INFO     | sum of deviations: 8378485259997.141
[2025-11-26 03:39:06] 2025-11-26 08:20:56,435 | INFO     | mean x: 1764095652.7253919
[2025-11-26 03:39:06] 2025-11-26 08:20:56,435 | INFO     | mean y: 3059094.9272727272
[2025-11-26 03:39:06] 2025-11-26 08:20:56,435 | INFO     | intersect: -11744134851.285755
[2025-11-26 03:39:06] 2025-11-26 08:20:56,465 | INFO     | chi2: 3.2064085276915297
[2025-11-26 03:39:06] 2025-11-26 08:20:56,466 | INFO     | current chi2=3.2064085276915297 (change=42.263599260807894 %)
[2025-11-26 03:39:06] 2025-11-26 08:20:56,467 | INFO     | sum of square deviations: 1246415482811.0347
[2025-11-26 03:39:06] 2025-11-26 08:20:56,974 | INFO     | sum of deviations: 8579433534593.642
[2025-11-26 03:39:06] 2025-11-26 08:20:56,974 | INFO     | mean x: 1764095500.227044
[2025-11-26 03:39:06] 2025-11-26 08:20:56,974 | INFO     | mean y: 3061691.654716981
[2025-11-26 03:39:06] 2025-11-26 08:20:56,975 | INFO     | intersect: -12139711165.065493
[2025-11-26 03:39:06] 2025-11-26 08:20:56,976 | INFO     | chi2: 2.6011784543602565
[2025-11-26 03:39:06] 2025-11-26 08:20:56,976 | INFO     | current chi2=2.6011784543602565 (change=18.875638213419165 %)
[2025-11-26 03:39:06] 2025-11-26 08:20:56,976 | INFO     | right removable region: 1589
[2025-11-26 03:39:06] 2025-11-26 08:20:56,978 | INFO     | sum of square deviations: 1282022474002.877
[2025-11-26 03:39:06] 2025-11-26 08:20:57,057 | INFO     | sum of deviations: 6216135468847.294
[2025-11-26 03:39:06] 2025-11-26 08:20:57,058 | INFO     | mean x: 1764096262.7152648
[2025-11-26 03:39:06] 2025-11-26 08:20:57,058 | INFO     | mean y: 3043757.893457944
[2025-11-26 03:39:06] 2025-11-26 08:20:57,058 | INFO     | intersect: -8550520295.384365
[2025-11-26 03:39:06] 2025-11-26 08:20:57,061 | INFO     | chi2: 10.687671109917739
[2025-11-26 03:39:06] 2025-11-26 08:20:57,061 | INFO     | current chi2=10.687671109917739 (change=17.09962889775077 %)
[2025-11-26 03:39:06] 2025-11-26 08:20:57,061 | INFO     | left removable region: 10
[2025-11-26 03:39:06] 2025-11-26 08:20:57,063 | INFO     | sum of square deviations: 1220723702296.1453
[2025-11-26 03:39:06] 2025-11-26 08:20:57,119 | INFO     | sum of deviations: 7981336125892.617
[2025-11-26 03:39:06] 2025-11-26 08:20:57,119 | INFO     | mean x: 1764095774.7314756
[2025-11-26 03:39:06] 2025-11-26 08:20:57,119 | INFO     | mean y: 3070134.550981634
[2025-11-26 03:39:06] 2025-11-26 08:20:57,119 | INFO     | intersect: -11530941460.304665
[2025-11-26 03:39:06] 2025-11-26 08:20:57,121 | INFO     | chi2: 0.2418136857792995
[2025-11-26 03:39:06] 2025-11-26 08:20:57,121 | INFO     | current memory leak: 6.54 B/s (using 1579 data points, chi2=0.24)
[2025-11-26 03:39:06] 2025-11-26 08:20:57,123 | INFO     | could have reported an average CPU frequency of 2963 MHz (57 samples)
[2025-11-26 03:39:06] 2025-11-26 08:20:57,123 | INFO     | ..............................
[2025-11-26 03:39:06] 2025-11-26 08:20:57,123 | INFO     | . Timing measurements:
[2025-11-26 03:39:06] 2025-11-26 08:20:57,124 | INFO     | . get job = 0 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | . initial setup = 3 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | . payload setup = 25 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | . stage-in = 0 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | . payload execution = 98187 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | . stage-out = 12 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | . log creation = 6 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,125 | INFO     | ..............................
[2025-11-26 03:39:06] 2025-11-26 08:20:57,616 | INFO     | 
[2025-11-26 03:39:06] 2025-11-26 08:20:57,616 | INFO     | job summary report
[2025-11-26 03:39:06] 2025-11-26 08:20:57,616 | INFO     | --------------------------------------------------
[2025-11-26 03:39:06] 2025-11-26 08:20:57,616 | INFO     | PanDA job id: 6895384676
[2025-11-26 03:39:06] 2025-11-26 08:20:57,616 | INFO     | task id: 47556149
[2025-11-26 03:39:06] 2025-11-26 08:20:57,616 | INFO     | errors: (none)
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | pilot state: finished 
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | transexitcode: 0
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | exeerrorcode: 0
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | exeerrordiag: 
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | exitcode: 0
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | exitmsg: OK
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | cpuconsumptiontime: 247607 s
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | nevents: 1000
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | neventsw: 0
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | pid: 1794760
[2025-11-26 03:39:06] 2025-11-26 08:20:57,617 | INFO     | pgrp: 1794760
[2025-11-26 03:39:06] 2025-11-26 08:20:57,618 | INFO     | corecount: 9
[2025-11-26 03:39:06] 2025-11-26 08:20:57,618 | INFO     | event service: False
[2025-11-26 03:39:06] 2025-11-26 08:20:57,618 | INFO     | sizes: {0: 2284139, 1: 2284338, 12: 2284338, 18: 2284628, 23: 2284656, 98217: 2354995, 98219: 2355122, 98234: 2364177, 98236: 2364233, 98268: 2364479}
[2025-11-26 03:39:06] 2025-11-26 08:20:57,618 | INFO     | --------------------------------------------------
[2025-11-26 03:39:06] 2025-11-26 08:20:57,618 | INFO     | 
[2025-11-26 03:39:06] 2025-11-26 08:20:57,618 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 03:39:06] 2025-11-26 08:20:57,788 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,789 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | job 6895384676 has completed (purged errors)
[2025-11-26 03:39:06] 2025-11-26 08:20:57,790 | INFO     | overall cleanup function is called
[2025-11-26 03:39:06] 2025-11-26 08:20:58,845 | INFO     | --- collectZombieJob: --- 10, [1794760]
[2025-11-26 03:39:06] 2025-11-26 08:20:58,846 | INFO     | zombie collector waiting for pid 1794760
[2025-11-26 03:39:06] 2025-11-26 08:20:58,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 03:39:06] 2025-11-26 08:20:58,846 | INFO     | collected zombie processes
[2025-11-26 03:39:06] 2025-11-26 08:20:58,846 | INFO     | will attempt to kill all subprocesses of pid=1794760
[2025-11-26 03:39:06] 2025-11-26 08:20:59,495 | INFO     | PID=1768469 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:39:06] 2025-11-26 08:20:59,495 | INFO     | .. there are 34 such processes running
[2025-11-26 03:39:06] 2025-11-26 08:21:00,685 | INFO     | process IDs to be killed: [1794760] (in reverse order)
[2025-11-26 03:39:06] 2025-11-26 08:21:00,933 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 03:39:06] 2025-11-26 08:21:00,934 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 03:39:06] 2025-11-26 08:21:00,951 | INFO     | did not find any defunct processes belonging to 1794760
[2025-11-26 03:39:06] 2025-11-26 08:21:00,967 | INFO     | did not find any defunct processes belonging to 1794760
[2025-11-26 03:39:06] 2025-11-26 08:21:00,968 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 03:39:06] 2025-11-26 08:21:00,969 | INFO     | ready for new job
[2025-11-26 03:39:06] 2025-11-26 08:21:00,969 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 03:39:06] 2025-11-26 08:21:00,983 | INFO     | ***************************************
[2025-11-26 03:39:06] 2025-11-26 08:21:00,983 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 03:39:06] 2025-11-26 08:21:00,983 | INFO     | ***************************************
[2025-11-26 03:39:06] 2025-11-26 08:21:00,984 | INFO     | 
[2025-11-26 03:39:06] 2025-11-26 08:21:00,991 | INFO     | architecture information:
[2025-11-26 03:39:06] 2025-11-26 08:21:00,996 | INFO     | executing command: cat /etc/os-release
[2025-11-26 03:39:06] 2025-11-26 08:21:01,062 | INFO     | cat /etc/os-release:
[2025-11-26 03:39:06] NAME="CentOS Linux"
[2025-11-26 03:39:06] VERSION="7 (Core)"
[2025-11-26 03:39:06] ID="centos"
[2025-11-26 03:39:06] ID_LIKE="rhel fedora"
[2025-11-26 03:39:06] VERSION_ID="7"
[2025-11-26 03:39:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 03:39:06] ANSI_COLOR="0;31"
[2025-11-26 03:39:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 03:39:06] HOME_URL="https://www.centos.org/"
[2025-11-26 03:39:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 03:39:06] 
[2025-11-26 03:39:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 03:39:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 03:39:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 03:39:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 03:39:06] 
[2025-11-26 03:39:06] 2025-11-26 08:21:01,062 | INFO     | ***************************************
[2025-11-26 03:39:06] 2025-11-26 08:21:01,567 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 03:39:06] 2025-11-26 08:21:01,666 | INFO     | sufficient remaining disk space (68980572160 B)
[2025-11-26 03:39:06] 2025-11-26 08:21:01,667 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 03:39:06] 2025-11-26 08:21:01,667 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 03:39:06] 2025-11-26 08:21:01,667 | INFO     | update_server=False
[2025-11-26 03:39:06] 2025-11-26 08:21:01,667 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 03:39:06] 2025-11-26 08:21:01,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 03:39:06] 2025-11-26 08:21:01,800 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:39:06] 2025-11-26 08:21:01,801 | INFO     | aborting loop
[2025-11-26 03:39:06] 2025-11-26 08:21:01,913 | INFO     | all data control threads have been joined
[2025-11-26 03:39:06] 2025-11-26 08:21:02,227 | INFO     | all job control threads have been joined
[2025-11-26 03:39:06] 2025-11-26 08:21:02,429 | INFO     | all payload control threads have been joined
[2025-11-26 03:39:06] 2025-11-26 08:21:02,672 | INFO     | [job] retrieve thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:02,677 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 03:39:06] 2025-11-26 08:21:02,807 | INFO     | [job] job monitor thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:02,860 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:02,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 03:39:06] 2025-11-26 08:21:02,921 | INFO     | [data] control thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,100 | INFO     | [data] copytool_in thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,234 | INFO     | [job] control thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,262 | INFO     | [payload] failed_post thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,432 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,437 | INFO     | [payload] control thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,440 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,484 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,547 | INFO     | [payload] validate_post thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,683 | INFO     | [job] queue monitor thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:03,691 | INFO     | [data] copytool_out thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:04,023 | INFO     | [job] validate thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:06,927 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 03:39:06] 2025-11-26 08:21:29,479 | INFO     | [monitor] cgroup control has ended
[2025-11-26 03:39:06] 2025-11-26 08:21:30,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139846136330048)>', '<ExcThread(monitor, started 139845192111872)>']
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | INFO     | PID=1768469 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | INFO     | .. there are 34 such processes running
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 03:39:06] 2025-11-26 08:21:32,950 | INFO     | [monitor] control thread has ended
[2025-11-26 03:39:06] 2025-11-26 08:21:35,811 | INFO     | all workflow threads have been joined
[2025-11-26 03:39:06] 2025-11-26 08:21:35,812 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 03:39:06] 2025-11-26 08:21:35,812 | INFO     | traces error code: 0
[2025-11-26 03:39:06] 2025-11-26 08:21:35,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 03:39:06] 2025-11-26 08:21:36,609 [wrapper] ==== pilot stdout END ====
[2025-11-26 03:39:06] 2025-11-26 08:21:36,626 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 03:39:06] 2025-11-26 08:21:36,628 [wrapper] pilotpid: 1768469
[2025-11-26 03:39:06] 2025-11-26 08:21:36,637 [wrapper] Pilot exit status: 0
[2025-11-26 03:39:06] 2025-11-26 08:21:36,730 [wrapper] pandaids: 6895384676
[2025-11-26 03:39:06] 2025-11-26 08:21:36,842 [wrapper] cleanup supervisor_pilot 3142861 1768470
[2025-11-26 03:39:06] 2025-11-26 08:21:36,869 [wrapper] Test setup, not cleaning
[2025-11-26 03:39:06] 2025-11-26 08:21:36,884 [wrapper] apfmon messages muted
[2025-11-26 03:39:06] 2025-11-26 08:21:36,908 [wrapper] ==== wrapper stdout END ====
[2025-11-26 03:39:06] 2025-11-26 08:21:36,926 [wrapper] ==== wrapper stderr END ====
[2025-11-26 03:39:06]  *** Error codes and diagnostics ***
[2025-11-26 03:39:06]     "exeErrorCode": 0,
[2025-11-26 03:39:06]     "exeErrorDiag": "",
[2025-11-26 03:39:06]     "pilotErrorCode": 0,
[2025-11-26 03:39:06]     "pilotErrorDiag": "",
[2025-11-26 03:39:06]  *** Listing of results directory ***
[2025-11-26 03:39:06] total 1337640
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:05 queuedata.json
[2025-11-26 03:39:06] -rwx------. 1 boincer umatlas     36292 Nov 24 00:06 runpilot2-wrapper.sh
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 03:39:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-26 03:39:06] -rw-r--r--. 2 boincer umatlas 409251832 Nov 25 00:01 EVNT.47483658._001226.pool.root.1
[2025-11-26 03:39:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 03:39:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-26 03:39:06] -rw-r--r--. 2 boincer umatlas    590112 Nov 25 00:01 input.tar.gz
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:01 pandaJob.out
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-26 03:39:06] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas       533 Nov 26 02:55 boinc_task_state.xml
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas 926684117 Nov 26 03:19 HITS.47556149._002130.pool.root.1
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas      1057 Nov 26 03:20 memory_monitor_summary.json
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas   1516240 Nov 26 03:20 agis_ddmendpoints.agis.ALL.json
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas   2681531 Nov 26 03:20 log.47556149._002130.job.log.tgz.1
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas        95 Nov 26 03:20 pilot_heartbeat.json
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas      8619 Nov 26 03:20 heartbeat.json
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas      4824 Nov 26 03:21 pilotlog.txt
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas  12262119 Nov 26 03:21 log.47556149._002130.job.log.1
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas       353 Nov 26 03:21 output.list
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas       620 Nov 26 03:21 runtime_log
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas  14960640 Nov 26 03:21 result.tar.gz
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas       661 Nov 26 03:21 4gAMDmFxdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcRLKDmasqRjn.diag
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 03:21 runtime_log.err
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas      6845 Nov 26 03:38 init_data.xml
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 03:39 boinc_mmap_file
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas     21348 Nov 26 03:39 stderr.txt
[2025-11-26 03:39:06] -rw-r--r--. 1 boincer umatlas        29 Nov 26 03:39 wrapper_checkpoint.txt
[2025-11-26 03:39:06] HITS file was successfully produced:
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas 926684117 Nov 26 03:19 shared/HITS.pool.root.1
[2025-11-26 03:39:06]  *** Contents of shared directory: ***
[2025-11-26 03:39:06] total 1319844
[2025-11-26 03:39:06] -rw-r--r--. 2 boincer umatlas 409251832 Nov 25 00:01 ATLAS.root_0
[2025-11-26 03:39:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 03:39:06] -rw-r--r--. 2 boincer umatlas    590112 Nov 25 00:01 input.tar.gz
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas 926684117 Nov 26 03:19 HITS.pool.root.1
[2025-11-26 03:39:06] -rw-------. 1 boincer umatlas  14960640 Nov 26 03:21 result.tar.gz
03:39:08 (1757442): run_atlas exited; CPU time 249849.029389
03:39:08 (1757442): called boinc_finish(0)

</stderr_txt>
]]>

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