Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:44 (1386593): wrapper (7.7.26015): starting
00:03:44 (1386593): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:03:44] Arguments: --nthreads 12
[2025-11-25 00:03:44] Threads: 12
[2025-11-25 00:03:44] Checking for CVMFS
[2025-11-25 00:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:46] 2.13.3.0 44796 28024 364112 153270 1 380 30961115 32947200 32129 16776704 0 110375804 99.486 144202191 35072 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:03:46] CVMFS is ok
[2025-11-25 00:03:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:46] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:46] Checking for apptainer binary...
[2025-11-25 00:03:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:46] Running /usr/bin/apptainer --version
[2025-11-25 00:03:46] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:47] c6-6-8-2.aglt2.org
[2025-11-25 00:03:47] apptainer works
[2025-11-25 00:03:47] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:03:47] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:03:47] Starting ATLAS job with PandaID=6895384699
[2025-11-25 00:03:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:46:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:46:27] 2025-11-26 16:45:37,834 | INFO     | time since job start (128435s) is within the limit (172800.0s)
[2025-11-26 11:46:27] 2025-11-26 16:45:39,349 | INFO     | monitor loop #6454: job 0:6895384699 is in state 'finished'
[2025-11-26 11:46:27] 2025-11-26 16:45:39,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:46:27] 2025-11-26 16:45:39,856 | INFO     | time since job start (128437s) is within the limit (172800.0s)
[2025-11-26 11:46:27] 2025-11-26 16:45:41,863 | INFO     | time since job start (128439s) is within the limit (172800.0s)
[2025-11-26 11:46:27] 2025-11-26 16:45:41,869 | INFO     | monitor loop #6455: job 0:6895384699 is in state 'finished'
[2025-11-26 11:46:27] 2025-11-26 16:45:41,870 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:46:27] 2025-11-26 16:45:43,883 | INFO     | time since job start (128441s) is within the limit (172800.0s)
[2025-11-26 11:46:27] 2025-11-26 16:45:44,266 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 11:46:27] 2025-11-26 16:45:44,288 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2565.4093020833334
[2025-11-26 11:46:27] 2025-11-26 16:45:44,326 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895384699/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 11:46:27] 2025-11-26 16:45:44,327 | INFO     | extracted standard info from prmon json
[2025-11-26 11:46:27] 2025-11-26 16:45:44,327 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:46:27] 2025-11-26 16:45:44,327 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:46:27] 2025-11-26 16:45:44,384 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:46:27] 2025-11-26 16:45:44,387 | INFO     | sum of square deviations: 2883962583151.8843
[2025-11-26 11:46:27] 2025-11-26 16:45:44,407 | INFO     | monitor loop #6456: job 0:6895384699 is in state 'finished'
[2025-11-26 11:46:27] 2025-11-26 16:45:44,408 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:46:27] 2025-11-26 16:45:44,949 | INFO     | sum of deviations: 15746087781021.227
[2025-11-26 11:46:27] 2025-11-26 16:45:44,949 | INFO     | mean x: 1764111379.0076082
[2025-11-26 11:46:27] 2025-11-26 16:45:44,949 | INFO     | mean y: 3458575.1730860677
[2025-11-26 11:46:27] 2025-11-26 16:45:44,949 | INFO     | intersect: -9628376730.746096
[2025-11-26 11:46:27] 2025-11-26 16:45:44,969 | INFO     | chi2: 24.33388176057315
[2025-11-26 11:46:27] 2025-11-26 16:45:44,972 | INFO     | sum of square deviations: 2863446570932.721
[2025-11-26 11:46:27] 2025-11-26 16:45:45,948 | INFO     | time since job start (128443s) is within the limit (172800.0s)
[2025-11-26 11:46:27] 2025-11-26 16:45:46,017 | INFO     | sum of deviations: 16652654982781.275
[2025-11-26 11:46:27] 2025-11-26 16:45:46,017 | INFO     | mean x: 1764111226.5290754
[2025-11-26 11:46:27] 2025-11-26 16:45:46,017 | INFO     | mean y: 3465312.061963775
[2025-11-26 11:46:27] 2025-11-26 16:45:46,017 | INFO     | intersect: -10255896921.147322
[2025-11-26 11:46:27] 2025-11-26 16:45:46,069 | INFO     | chi2: 20.660534417275226
[2025-11-26 11:46:27] 2025-11-26 16:45:46,069 | INFO     | current chi2=20.660534417275226 (change=15.09560775975186 %)
[2025-11-26 11:46:27] 2025-11-26 16:45:46,070 | INFO     | right removable region: 2097
[2025-11-26 11:46:27] 2025-11-26 16:45:46,072 | INFO     | sum of square deviations: 2863435015702.731
[2025-11-26 11:46:27] 2025-11-26 16:45:46,817 | INFO     | sum of deviations: 14718411881163.816
[2025-11-26 11:46:27] 2025-11-26 16:45:46,817 | INFO     | mean x: 1764111531.5290754
[2025-11-26 11:46:27] 2025-11-26 16:45:46,817 | INFO     | mean y: 3466210.290276454
[2025-11-26 11:46:27] 2025-11-26 16:45:46,817 | INFO     | intersect: -9064286325.72579
[2025-11-26 11:46:27] 2025-11-26 16:45:46,826 | INFO     | chi2: 20.111438306499483
[2025-11-26 11:46:27] 2025-11-26 16:45:46,827 | INFO     | current chi2=20.111438306499483 (change=17.352116261676997 %)
[2025-11-26 11:46:27] 2025-11-26 16:45:46,827 | INFO     | left removable region: 10
[2025-11-26 11:46:27] 2025-11-26 16:45:46,852 | INFO     | sum of square deviations: 2818631399087.7275
[2025-11-26 11:46:27] 2025-11-26 16:45:47,036 | INFO     | monitor loop #6457: job 0:6895384699 is in state 'finished'
[2025-11-26 11:46:27] 2025-11-26 16:45:47,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:46:27] 2025-11-26 16:45:48,026 | INFO     | sum of deviations: 14882910334648.496
[2025-11-26 11:46:27] 2025-11-26 16:45:48,027 | INFO     | mean x: 1764111501.0766652
[2025-11-26 11:46:27] 2025-11-26 16:45:48,027 | INFO     | mean y: 3481029.003354097
[2025-11-26 11:46:27] 2025-11-26 16:45:48,027 | INFO     | intersect: -9311363508.435575
[2025-11-26 11:46:27] 2025-11-26 16:45:48,084 | INFO     | chi2: 12.609540514448645
[2025-11-26 11:46:27] 2025-11-26 16:45:48,084 | INFO     | current memory leak: 5.28 B/s (using 2087 data points, chi2=12.61)
[2025-11-26 11:46:27] 2025-11-26 16:45:48,086 | INFO     | could have reported an average CPU frequency of 2608 MHz (73 samples)
[2025-11-26 11:46:27] 2025-11-26 16:45:48,086 | INFO     | ..............................
[2025-11-26 11:46:27] 2025-11-26 16:45:48,086 | INFO     | . Timing measurements:
[2025-11-26 11:46:27] 2025-11-26 16:45:48,086 | INFO     | . get job = 0 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,086 | INFO     | . initial setup = 6 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,087 | INFO     | . payload setup = 51 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,087 | INFO     | . stage-in = 0 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,087 | INFO     | . payload execution = 128265 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,087 | INFO     | . stage-out = 12 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,087 | INFO     | . log creation = 2 s
[2025-11-26 11:46:27] 2025-11-26 16:45:48,087 | INFO     | ..............................
[2025-11-26 11:46:27] 2025-11-26 16:45:49,053 | INFO     | 
[2025-11-26 11:46:27] 2025-11-26 16:45:49,054 | INFO     | job summary report
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | --------------------------------------------------
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | PanDA job id: 6895384699
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | task id: 47556149
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | errors: (none)
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | pilot state: finished 
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | transexitcode: 0
[2025-11-26 11:46:27] 2025-11-26 16:45:49,123 | INFO     | exeerrorcode: 0
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | exeerrordiag: 
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | exitcode: 0
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | exitmsg: OK
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | cpuconsumptiontime: 269583 s
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | nevents: 1000
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | neventsw: 0
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | pid: 1423814
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | pgrp: 1423814
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | corecount: 12
[2025-11-26 11:46:27] 2025-11-26 16:45:49,124 | INFO     | event service: False
[2025-11-26 11:46:27] 2025-11-26 16:45:49,125 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284195, 3: 2284366, 14: 2284394, 26: 2284422, 35: 2284840, 37: 2284868, 128322: 2365160, 128336: 2374159, 128337: 2374215, 1283
[2025-11-26 11:46:27] 2025-11-26 16:45:49,125 | INFO     | --------------------------------------------------
[2025-11-26 11:46:27] 2025-11-26 16:45:49,125 | INFO     | 
[2025-11-26 11:46:27] 2025-11-26 16:45:49,125 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 11:46:27] 2025-11-26 16:45:49,195 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,195 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:46:27] 2025-11-26 16:45:49,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:46:27] 2025-11-26 16:45:49,197 | INFO     | job 6895384699 has completed (purged errors)
[2025-11-26 11:46:27] 2025-11-26 16:45:49,197 | INFO     | overall cleanup function is called
[2025-11-26 11:46:27] 2025-11-26 16:45:50,441 | INFO     | --- collectZombieJob: --- 10, [1423814]
[2025-11-26 11:46:27] 2025-11-26 16:45:50,441 | INFO     | zombie collector waiting for pid 1423814
[2025-11-26 11:46:27] 2025-11-26 16:45:50,441 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:46:27] 2025-11-26 16:45:50,441 | INFO     | collected zombie processes
[2025-11-26 11:46:27] 2025-11-26 16:45:50,441 | INFO     | will attempt to kill all subprocesses of pid=1423814
[2025-11-26 11:46:27] 2025-11-26 16:45:51,890 | INFO     | PID=1399580 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:46:27] 2025-11-26 16:45:51,891 | INFO     | .. there are 35 such processes running
[2025-11-26 11:46:27] 2025-11-26 16:45:53,351 | INFO     | process IDs to be killed: [1423814] (in reverse order)
[2025-11-26 11:46:27] 2025-11-26 16:45:53,818 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:46:27] 2025-11-26 16:45:53,819 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:46:27] 2025-11-26 16:45:53,845 | INFO     | did not find any defunct processes belonging to 1423814
[2025-11-26 11:46:27] 2025-11-26 16:45:53,881 | INFO     | did not find any defunct processes belonging to 1423814
[2025-11-26 11:46:27] 2025-11-26 16:45:53,890 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:46:27] 2025-11-26 16:45:53,890 | INFO     | ready for new job
[2025-11-26 11:46:27] 2025-11-26 16:45:53,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:46:27] 2025-11-26 16:45:53,898 | INFO     | ***************************************
[2025-11-26 11:46:27] 2025-11-26 16:45:53,898 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:46:27] 2025-11-26 16:45:53,898 | INFO     | ***************************************
[2025-11-26 11:46:27] 2025-11-26 16:45:53,899 | INFO     | 
[2025-11-26 11:46:27] 2025-11-26 16:45:53,904 | INFO     | architecture information:
[2025-11-26 11:46:27] 2025-11-26 16:45:53,905 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:46:27] 2025-11-26 16:45:53,930 | INFO     | cat /etc/os-release:
[2025-11-26 11:46:27] NAME="CentOS Linux"
[2025-11-26 11:46:27] VERSION="7 (Core)"
[2025-11-26 11:46:27] ID="centos"
[2025-11-26 11:46:27] ID_LIKE="rhel fedora"
[2025-11-26 11:46:27] VERSION_ID="7"
[2025-11-26 11:46:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:46:27] ANSI_COLOR="0;31"
[2025-11-26 11:46:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:46:27] HOME_URL="https://www.centos.org/"
[2025-11-26 11:46:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:46:27] 
[2025-11-26 11:46:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:46:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:46:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:46:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:46:27] 
[2025-11-26 11:46:27] 2025-11-26 16:45:53,930 | INFO     | ***************************************
[2025-11-26 11:46:27] 2025-11-26 16:45:54,434 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 11:46:27] 2025-11-26 16:45:54,484 | INFO     | sufficient remaining disk space (63322456064 B)
[2025-11-26 11:46:27] 2025-11-26 16:45:54,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:46:27] 2025-11-26 16:45:54,484 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:46:27] 2025-11-26 16:45:54,485 | INFO     | update_server=False
[2025-11-26 11:46:27] 2025-11-26 16:45:54,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:46:27] 2025-11-26 16:45:54,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:46:27] 2025-11-26 16:45:54,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:46:27] 2025-11-26 16:45:54,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:46:27] 2025-11-26 16:45:54,691 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 11:46:27] 2025-11-26 16:45:54,692 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 11:46:27] 2025-11-26 16:45:54,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:46:27] 2025-11-26 16:45:54,692 | INFO     | will abort loop
[2025-11-26 11:46:27] 2025-11-26 16:45:54,742 | INFO     | all job control threads have been joined
[2025-11-26 11:46:27] 2025-11-26 16:45:55,055 | INFO     | all data control threads have been joined
[2025-11-26 11:46:27] 2025-11-26 16:45:55,465 | INFO     | all payload control threads have been joined
[2025-11-26 11:46:27] 2025-11-26 16:45:55,491 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,491 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,698 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,749 | INFO     | [job] control thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,918 | INFO     | [job] validate thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,918 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,944 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:55,944 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,061 | INFO     | [data] control thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,162 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,163 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,471 | INFO     | [payload] control thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,491 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,501 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:56,876 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:45:58,493 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:46:27] 2025-11-26 16:46:07,314 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:46:27] 2025-11-26 16:46:08,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140492714600256)>', '<ExcThread(monitor, started 140492356425472)>']
[2025-11-26 11:46:27] 2025-11-26 16:46:13,051 | INFO     | all workflow threads have been joined
[2025-11-26 11:46:27] 2025-11-26 16:46:13,051 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:46:27] 2025-11-26 16:46:13,051 | INFO     | traces error code: 0
[2025-11-26 11:46:27] 2025-11-26 16:46:13,052 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:46:27] 2025-11-26 16:46:25,166 | INFO     | PID=1399580 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 11:46:27] 2025-11-26 16:46:25,166 | INFO     | .. there are 35 such processes running
[2025-11-26 11:46:27] 2025-11-26 16:46:25,167 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:46:27] 2025-11-26 16:46:25,167 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:46:27] 2025-11-26 16:46:25,167 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:46:27] 2025-11-26 16:46:25,167 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:46:27] 2025-11-26 16:46:25,167 | INFO     | [monitor] control thread has ended
[2025-11-26 11:46:27] 2025-11-26 16:46:25,697 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:46:27] 2025-11-26 16:46:25,713 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:46:27] 2025-11-26 16:46:25,728 [wrapper] pilotpid: 1399580
[2025-11-26 11:46:27] 2025-11-26 16:46:25,772 [wrapper] Pilot exit status: 0
[2025-11-26 11:46:27] 2025-11-26 16:46:25,898 [wrapper] pandaids: 6895384699
[2025-11-26 11:46:27] 2025-11-26 16:46:26,338 [wrapper] cleanup supervisor_pilot 4161520 1399581
[2025-11-26 11:46:27] 2025-11-26 16:46:26,360 [wrapper] Test setup, not cleaning
[2025-11-26 11:46:27] 2025-11-26 16:46:26,395 [wrapper] apfmon messages muted
[2025-11-26 11:46:27] 2025-11-26 16:46:26,423 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:46:27] 2025-11-26 16:46:26,459 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:46:27]  *** Error codes and diagnostics ***
[2025-11-26 11:46:27]     "exeErrorCode": 0,
[2025-11-26 11:46:27]     "exeErrorDiag": "",
[2025-11-26 11:46:27]     "pilotErrorCode": 0,
[2025-11-26 11:46:27]     "pilotErrorDiag": "",
[2025-11-26 11:46:27]  *** Listing of results directory ***
[2025-11-26 11:46:27] total 1326048
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 11:46:27] -rwx------ 1 boincer umatlas     36292 Nov 24 00:10 runpilot2-wrapper.sh
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 00:10 queuedata.json
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas       100 Nov 25 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:46:27] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 00:03 run_atlas
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas       105 Nov 25 00:03 job.xml
[2025-11-26 11:46:27] -rw-r--r-- 2 boincer umatlas 409855410 Nov 25 00:03 EVNT.47483658._001229.pool.root.1
[2025-11-26 11:46:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 11:46:27] drwxrwx--x 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-26 11:46:27] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 00:03 input.tar.gz
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 00:03 pandaJob.out
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-26 11:46:27] drwx------ 5 boincer umatlas      4096 Nov 25 00:05 pilot3
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas       533 Nov 26 11:13 boinc_task_state.xml
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas      6878 Nov 26 11:36 init_data.xml
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas 908542846 Nov 26 11:42 HITS.47556149._002153.pool.root.1
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas      1071 Nov 26 11:44 memory_monitor_summary.json
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas   1516240 Nov 26 11:45 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas   3265155 Nov 26 11:45 log.47556149._002153.job.log.tgz.1
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas      7982 Nov 26 11:45 heartbeat.json
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas        95 Nov 26 11:46 pilot_heartbeat.json
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas       823 Nov 26 11:46 pilotlog.txt
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 11:46 boinc_mmap_file
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas  14515855 Nov 26 11:46 log.47556149._002153.job.log.1
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas        29 Nov 26 11:46 wrapper_checkpoint.txt
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas       353 Nov 26 11:46 output.list
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas       620 Nov 26 11:46 runtime_log
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas  17797120 Nov 26 11:46 result.tar.gz
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas      9346 Nov 26 11:46 runtime_log.err
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas       667 Nov 26 11:46 m4DLDmq1dh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCSLKDmOfcmun.diag
[2025-11-26 11:46:27] -rw-r--r-- 1 boincer umatlas     21887 Nov 26 11:46 stderr.txt
[2025-11-26 11:46:27] HITS file was successfully produced:
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas 908542846 Nov 26 11:42 shared/HITS.pool.root.1
[2025-11-26 11:46:27]  *** Contents of shared directory: ***
[2025-11-26 11:46:27] total 1305488
[2025-11-26 11:46:27] -rw-r--r-- 2 boincer umatlas 409855410 Nov 25 00:03 ATLAS.root_0
[2025-11-26 11:46:27] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 11:46:27] -rw-r--r-- 2 boincer umatlas    590105 Nov 25 00:03 input.tar.gz
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas 908542846 Nov 26 11:42 HITS.pool.root.1
[2025-11-26 11:46:27] -rw------- 1 boincer umatlas  17797120 Nov 26 11:46 result.tar.gz
11:46:28 (1386593): run_atlas exited; CPU time 273956.667084
11:46:28 (1386593): called boinc_finish(0)

</stderr_txt>
]]>

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