Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:56 (3184890): wrapper (7.7.26015): starting
00:02:56 (3184890): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:02:56] Arguments: --nthreads 8
[2025-11-25 00:02:56] Threads: 8
[2025-11-25 00:02:56] Checking for CVMFS
[2025-11-25 00:02:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:02:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:02:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:57] 2.13.2.0 6465 31954 411940 153270 3 362 22283378 40960000 16329 16776704 0 98001782 99.580 100644039 38728 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:02:57] CVMFS is ok
[2025-11-25 00:02:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:57] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:57] Checking for apptainer binary...
[2025-11-25 00:02:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:57] Running /usr/bin/apptainer --version
[2025-11-25 00:02:57] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:57] c-206-40.aglt2.org
[2025-11-25 00:02:57] apptainer works
[2025-11-25 00:02:57] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:02:57] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:02:57] Starting ATLAS job with PandaID=6893850353
[2025-11-25 00:02:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 06:57:01]  *** The last 200 lines of the pilot log: ***
[2025-11-26 06:57:01] 2025-11-26 11:56:04,773 | INFO     | time since job start (111170s) is within the limit (172800.0s)
[2025-11-26 06:57:01] 2025-11-26 11:56:05,548 | INFO     | monitor loop #6607: job 0:6893850353 is in state 'finished'
[2025-11-26 06:57:01] 2025-11-26 11:56:05,548 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:57:01] 2025-11-26 11:56:06,844 | INFO     | time since job start (111172s) is within the limit (172800.0s)
[2025-11-26 06:57:01] 2025-11-26 11:56:08,056 | INFO     | monitor loop #6608: job 0:6893850353 is in state 'finished'
[2025-11-26 06:57:01] 2025-11-26 11:56:08,056 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:57:01] 2025-11-26 11:56:08,875 | INFO     | time since job start (111174s) is within the limit (172800.0s)
[2025-11-26 06:57:01] 2025-11-26 11:56:10,585 | INFO     | monitor loop #6609: job 0:6893850353 is in state 'finished'
[2025-11-26 06:57:01] 2025-11-26 11:56:10,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:57:01] 2025-11-26 11:56:10,889 | INFO     | time since job start (111176s) is within the limit (172800.0s)
[2025-11-26 06:57:01] 2025-11-26 11:56:12,926 | INFO     | time since job start (111178s) is within the limit (172800.0s)
[2025-11-26 06:57:01] 2025-11-26 11:56:13,075 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 06:57:01] 2025-11-26 11:56:13,106 | INFO     | monitor loop #6610: job 0:6893850353 is in state 'finished'
[2025-11-26 06:57:01] 2025-11-26 11:56:13,106 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:57:01] 2025-11-26 11:56:13,110 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3250.735390625
[2025-11-26 06:57:01] 2025-11-26 11:56:13,202 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6893850353/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 06:57:01] 2025-11-26 11:56:13,203 | INFO     | extracted standard info from prmon json
[2025-11-26 06:57:01] 2025-11-26 11:56:13,203 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 06:57:01] 2025-11-26 11:56:13,203 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 06:57:01] 2025-11-26 11:56:13,405 | INFO     | fitting pss+swap vs Time
[2025-11-26 06:57:01] 2025-11-26 11:56:13,438 | INFO     | sum of square deviations: 1872857089377.1375
[2025-11-26 06:57:01] 2025-11-26 11:56:14,771 | INFO     | sum of deviations: 5690885025293.922
[2025-11-26 06:57:01] 2025-11-26 11:56:14,807 | INFO     | mean x: 1764102556.775398
[2025-11-26 06:57:01] 2025-11-26 11:56:14,807 | INFO     | mean y: 2839773.3690280067
[2025-11-26 06:57:01] 2025-11-26 11:56:14,807 | INFO     | intersect: -5357582482.2205
[2025-11-26 06:57:01] 2025-11-26 11:56:14,809 | INFO     | chi2: 25.210189184958534
[2025-11-26 06:57:01] 2025-11-26 11:56:14,836 | INFO     | sum of square deviations: 1857476096754.124
[2025-11-26 06:57:01] 2025-11-26 11:56:15,821 | INFO     | monitor loop #6611: job 0:6893850353 is in state 'finished'
[2025-11-26 06:57:01] 2025-11-26 11:56:15,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 06:57:01] 2025-11-26 11:56:16,724 | INFO     | sum of deviations: 6320866252501.689
[2025-11-26 06:57:01] 2025-11-26 11:56:16,724 | INFO     | mean x: 1764102404.277533
[2025-11-26 06:57:01] 2025-11-26 11:56:16,724 | INFO     | mean y: 2846018.210903084
[2025-11-26 06:57:01] 2025-11-26 11:56:16,725 | INFO     | intersect: -6000275837.645191
[2025-11-26 06:57:01] 2025-11-26 11:56:16,738 | INFO     | chi2: 21.496464615449547
[2025-11-26 06:57:01] 2025-11-26 11:56:16,739 | INFO     | current chi2=21.496464615449547 (change=14.731046015809957 %)
[2025-11-26 06:57:01] 2025-11-26 11:56:16,739 | INFO     | right removable region: 1815
[2025-11-26 06:57:01] 2025-11-26 11:56:16,740 | INFO     | sum of square deviations: 1857472680062.0642
[2025-11-26 06:57:01] 2025-11-26 11:56:17,423 | INFO     | sum of deviations: 5244838767081.993
[2025-11-26 06:57:01] 2025-11-26 11:56:17,424 | INFO     | mean x: 1764102709.2901983
[2025-11-26 06:57:01] 2025-11-26 11:56:17,424 | INFO     | mean y: 2844191.2466960354
[2025-11-26 06:57:01] 2025-11-26 11:56:17,424 | INFO     | intersect: -4978351159.89594
[2025-11-26 06:57:01] 2025-11-26 11:56:17,425 | INFO     | chi2: 23.21233216815962
[2025-11-26 06:57:01] 2025-11-26 11:56:17,425 | INFO     | current chi2=23.21233216815962 (change=7.924799778935893 %)
[2025-11-26 06:57:01] 2025-11-26 11:56:17,425 | INFO     | left removable region: 10
[2025-11-26 06:57:01] 2025-11-26 11:56:17,431 | INFO     | sum of square deviations: 1823929417245.9995
[2025-11-26 06:57:01] 2025-11-26 11:56:17,725 | INFO     | sum of deviations: 5838072011911.1045
[2025-11-26 06:57:01] 2025-11-26 11:56:17,726 | INFO     | mean x: 1764102678.798892
[2025-11-26 06:57:01] 2025-11-26 11:56:17,726 | INFO     | mean y: 2853007.256509695
[2025-11-26 06:57:01] 2025-11-26 11:56:17,726 | INFO     | intersect: -5643724309.745095
[2025-11-26 06:57:01] 2025-11-26 11:56:17,727 | INFO     | chi2: 18.862886265967614
[2025-11-26 06:57:01] 2025-11-26 11:56:17,727 | INFO     | current memory leak: 3.20 B/s (using 1805 data points, chi2=18.86)
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | could have reported an average CPU frequency of 3270 MHz (64 samples)
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | ..............................
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . Timing measurements:
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . get job = 0 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . initial setup = 2 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . payload setup = 11 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . stage-in = 0 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . payload execution = 111053 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . stage-out = 34 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,729 | INFO     | . log creation = 6 s
[2025-11-26 06:57:01] 2025-11-26 11:56:17,730 | INFO     | ..............................
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | 
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | job summary report
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | --------------------------------------------------
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | PanDA job id: 6893850353
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | task id: 47523449
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | errors: (none)
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | pilot state: finished 
[2025-11-26 06:57:01] 2025-11-26 11:56:18,313 | INFO     | transexitcode: 0
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | exeerrorcode: 0
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | exeerrordiag: 
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | exitcode: 0
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | exitmsg: OK
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | cpuconsumptiontime: 202150 s
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | nevents: 1000
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | neventsw: 0
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | pid: 3199247
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | pgrp: 3199247
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | corecount: 8
[2025-11-26 06:57:01] 2025-11-26 11:56:18,314 | INFO     | event service: False
[2025-11-26 06:57:01] 2025-11-26 11:56:18,315 | INFO     | sizes: {0: 2284310, 1: 2284338, 10: 2284600, 12: 2284628, 111070: 2360184, 111071: 2360183, 111106: 2369366, 111109: 2369422, 111162: 2369668}
[2025-11-26 06:57:01] 2025-11-26 11:56:18,315 | INFO     | --------------------------------------------------
[2025-11-26 06:57:01] 2025-11-26 11:56:18,315 | INFO     | 
[2025-11-26 06:57:01] 2025-11-26 11:56:18,315 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 06:57:01] 2025-11-26 11:56:18,471 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,472 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | job 6893850353 has completed (purged errors)
[2025-11-26 06:57:01] 2025-11-26 11:56:18,473 | INFO     | overall cleanup function is called
[2025-11-26 06:57:01] 2025-11-26 11:56:18,795 | INFO     | PID=3188559 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:57:01] 2025-11-26 11:56:18,795 | INFO     | .. there are 23 such processes running
[2025-11-26 06:57:01] 2025-11-26 11:56:20,474 | INFO     | --- collectZombieJob: --- 10, [3199247]
[2025-11-26 06:57:01] 2025-11-26 11:56:20,474 | INFO     | zombie collector waiting for pid 3199247
[2025-11-26 06:57:01] 2025-11-26 11:56:20,474 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 06:57:01] 2025-11-26 11:56:20,474 | INFO     | collected zombie processes
[2025-11-26 06:57:01] 2025-11-26 11:56:20,474 | INFO     | will attempt to kill all subprocesses of pid=3199247
[2025-11-26 06:57:01] 2025-11-26 11:56:22,290 | INFO     | process IDs to be killed: [3199247] (in reverse order)
[2025-11-26 06:57:01] 2025-11-26 11:56:24,575 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 06:57:01] 2025-11-26 11:56:24,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 06:57:01] 2025-11-26 11:56:24,967 | INFO     | did not find any defunct processes belonging to 3199247
[2025-11-26 06:57:01] 2025-11-26 11:56:25,841 | INFO     | did not find any defunct processes belonging to 3199247
[2025-11-26 06:57:01] 2025-11-26 11:56:25,973 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 06:57:01] 2025-11-26 11:56:25,974 | INFO     | ready for new job
[2025-11-26 06:57:01] 2025-11-26 11:56:25,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 06:57:01] 2025-11-26 11:56:26,262 | INFO     | ***************************************
[2025-11-26 06:57:01] 2025-11-26 11:56:26,262 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 06:57:01] 2025-11-26 11:56:26,262 | INFO     | ***************************************
[2025-11-26 06:57:01] 2025-11-26 11:56:26,262 | INFO     | 
[2025-11-26 06:57:01] 2025-11-26 11:56:26,378 | INFO     | architecture information:
[2025-11-26 06:57:01] 2025-11-26 11:56:26,655 | INFO     | executing command: cat /etc/os-release
[2025-11-26 06:57:01] 2025-11-26 11:56:27,061 | INFO     | cat /etc/os-release:
[2025-11-26 06:57:01] NAME="CentOS Linux"
[2025-11-26 06:57:01] VERSION="7 (Core)"
[2025-11-26 06:57:01] ID="centos"
[2025-11-26 06:57:01] ID_LIKE="rhel fedora"
[2025-11-26 06:57:01] VERSION_ID="7"
[2025-11-26 06:57:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 06:57:01] ANSI_COLOR="0;31"
[2025-11-26 06:57:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 06:57:01] HOME_URL="https://www.centos.org/"
[2025-11-26 06:57:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 06:57:01] 
[2025-11-26 06:57:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 06:57:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 06:57:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 06:57:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 06:57:01] 
[2025-11-26 06:57:01] 2025-11-26 11:56:27,061 | INFO     | ***************************************
[2025-11-26 06:57:01] 2025-11-26 11:56:27,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 06:57:01] 2025-11-26 11:56:27,707 | INFO     | sufficient remaining disk space (77777076224 B)
[2025-11-26 06:57:01] 2025-11-26 11:56:27,708 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 06:57:01] 2025-11-26 11:56:27,708 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 06:57:01] 2025-11-26 11:56:27,708 | INFO     | update_server=False
[2025-11-26 06:57:01] 2025-11-26 11:56:27,708 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 06:57:01] 2025-11-26 11:56:27,709 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:57:01] 2025-11-26 11:56:27,709 | INFO     | aborting loop
[2025-11-26 06:57:01] 2025-11-26 11:56:27,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 06:57:01] 2025-11-26 11:56:27,838 | INFO     | all data control threads have been joined
[2025-11-26 06:57:01] 2025-11-26 11:56:28,214 | INFO     | all job control threads have been joined
[2025-11-26 06:57:01] 2025-11-26 11:56:28,529 | INFO     | all payload control threads have been joined
[2025-11-26 06:57:01] 2025-11-26 11:56:28,714 | INFO     | [job] retrieve thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:28,786 | INFO     | [job] job monitor thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:28,792 | INFO     | [job] queue monitor thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:28,867 | INFO     | [data] control thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:28,991 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 06:57:01] 2025-11-26 11:56:29,234 | INFO     | [job] control thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,262 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,289 | INFO     | [job] validate thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,327 | INFO     | [payload] failed_post thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,458 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,534 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,573 | INFO     | [data] copytool_in thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,665 | INFO     | [payload] control thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,677 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:29,778 | INFO     | [payload] validate_post thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:31,012 | INFO     | [data] copytool_out thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:31,239 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 06:57:01] 2025-11-26 11:56:32,530 | INFO     | [monitor] cgroup control has ended
[2025-11-26 06:57:01] 2025-11-26 11:56:35,275 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 06:57:01] 2025-11-26 11:56:37,334 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139797815609152)>', '<ExcThread(monitor, started 139796773050112)>']
[2025-11-26 06:57:01] 2025-11-26 11:56:42,359 | INFO     | all workflow threads have been joined
[2025-11-26 06:57:01] 2025-11-26 11:56:42,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 06:57:01] 2025-11-26 11:56:42,359 | INFO     | traces error code: 0
[2025-11-26 06:57:01] 2025-11-26 11:56:42,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 06:57:01] 2025-11-26 11:56:56,974 | INFO     | PID=3188559 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 06:57:01] 2025-11-26 11:56:56,974 | INFO     | .. there are 23 such processes running
[2025-11-26 06:57:01] 2025-11-26 11:56:56,975 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 06:57:01] 2025-11-26 11:56:56,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 06:57:01] 2025-11-26 11:56:56,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 06:57:01] 2025-11-26 11:56:56,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 06:57:01] 2025-11-26 11:56:56,975 | INFO     | [monitor] control thread has ended
[2025-11-26 06:57:01] 2025-11-26 11:56:59,246 [wrapper] ==== pilot stdout END ====
[2025-11-26 06:57:01] 2025-11-26 11:56:59,276 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 06:57:01] 2025-11-26 11:56:59,296 [wrapper] pilotpid: 3188559
[2025-11-26 06:57:01] 2025-11-26 11:56:59,339 [wrapper] Pilot exit status: 0
[2025-11-26 06:57:01] 2025-11-26 11:56:59,471 [wrapper] pandaids: 6893850353
[2025-11-26 06:57:01] 2025-11-26 11:56:59,973 [wrapper] cleanup supervisor_pilot 4003536 3188560
[2025-11-26 06:57:01] 2025-11-26 11:57:00,016 [wrapper] Test setup, not cleaning
[2025-11-26 06:57:01] 2025-11-26 11:57:00,052 [wrapper] apfmon messages muted
[2025-11-26 06:57:01] 2025-11-26 11:57:00,092 [wrapper] ==== wrapper stdout END ====
[2025-11-26 06:57:01] 2025-11-26 11:57:00,134 [wrapper] ==== wrapper stderr END ====
[2025-11-26 06:57:01]  *** Error codes and diagnostics ***
[2025-11-26 06:57:01]     "exeErrorCode": 0,
[2025-11-26 06:57:01]     "exeErrorDiag": "",
[2025-11-26 06:57:01]     "pilotErrorCode": 0,
[2025-11-26 06:57:01]     "pilotErrorDiag": "",
[2025-11-26 06:57:01]  *** Listing of results directory ***
[2025-11-26 06:57:01] total 1348032
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-26 06:57:01] -rwx------. 1 boincer umatlas     36292 Nov 20 06:23 runpilot2-wrapper.sh
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:23 queuedata.json
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 06:57:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-26 06:57:01] -rw-r--r--. 2 boincer umatlas 410572758 Nov 25 00:02 EVNT.47493127._000331.pool.root.1
[2025-11-26 06:57:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 06:57:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:02 shared
[2025-11-26 06:57:01] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:02 input.tar.gz
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:02 boinc_lockfile
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:02 pandaJob.out
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-26 06:57:01] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas       533 Nov 26 06:16 boinc_task_state.xml
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas 932596309 Nov 26 06:52 HITS.47523449._003305.pool.root.1
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas      1064 Nov 26 06:54 memory_monitor_summary.json
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas      6904 Nov 26 06:54 init_data.xml
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas   1516240 Nov 26 06:55 agis_ddmendpoints.agis.ALL.json
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas   2715433 Nov 26 06:55 log.47523449._003305.job.log.tgz.1
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas        95 Nov 26 06:55 pilot_heartbeat.json
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas      8585 Nov 26 06:56 heartbeat.json
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas        29 Nov 26 06:56 wrapper_checkpoint.txt
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas       823 Nov 26 06:56 pilotlog.txt
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas  13932872 Nov 26 06:57 log.47523449._003305.job.log.1
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas       353 Nov 26 06:57 output.list
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 06:57 boinc_mmap_file
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas       620 Nov 26 06:57 runtime_log
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas  16670720 Nov 26 06:57 result.tar.gz
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 06:57 runtime_log.err
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas       663 Nov 26 06:57 K9iMDmtvHg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmpWGKDmCjBe8m.diag
[2025-11-26 06:57:01] -rw-r--r--. 1 boincer umatlas     21874 Nov 26 06:57 stderr.txt
[2025-11-26 06:57:01] HITS file was successfully produced:
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas 932596309 Nov 26 06:52 shared/HITS.pool.root.1
[2025-11-26 06:57:01]  *** Contents of shared directory: ***
[2025-11-26 06:57:01] total 1328576
[2025-11-26 06:57:01] -rw-r--r--. 2 boincer umatlas 410572758 Nov 25 00:02 ATLAS.root_0
[2025-11-26 06:57:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-26 06:57:01] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:02 input.tar.gz
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas 932596309 Nov 26 06:52 HITS.pool.root.1
[2025-11-26 06:57:01] -rw-------. 1 boincer umatlas  16670720 Nov 26 06:57 result.tar.gz
06:57:02 (3184890): run_atlas exited; CPU time 202335.165223
06:57:02 (3184890): called boinc_finish(0)

</stderr_txt>
]]>

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