Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:05 (3543021): wrapper (7.7.26015): starting
00:01:05 (3543021): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:01:05] Arguments: --nthreads 9
[2025-11-25 00:01:05] Threads: 9
[2025-11-25 00:01:05] Checking for CVMFS
[2025-11-25 00:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:01:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:01:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:01:07] 2.13.3.0 12161 28163 324156 153270 1 135 35434330 40960000 21120 16776704 0 72041643 99.541 86832593 38206 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:01:07] CVMFS is ok
[2025-11-25 00:01:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:01:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:01:07] Further information can be found at the LHC@home message board.
[2025-11-25 00:01:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:01:07] Checking for apptainer binary...
[2025-11-25 00:01:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:01:07] Running /usr/bin/apptainer --version
[2025-11-25 00:01:07] apptainer version 1.4.4-1.el9
[2025-11-25 00:01:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:01:07] c6-5-7-1.aglt2.org
[2025-11-25 00:01:07] apptainer works
[2025-11-25 00:01:07] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:01:07] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:01:08] Starting ATLAS job with PandaID=6895355700
[2025-11-25 00:01:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 09:22:03]  *** The last 200 lines of the pilot log: ***
[2025-11-26 09:22:03] 2025-11-26 14:21:26,849 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895355700/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 09:22:03] 2025-11-26 14:21:26,850 | INFO     | extracted standard info from prmon json
[2025-11-26 09:22:03] 2025-11-26 14:21:26,850 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 09:22:03] 2025-11-26 14:21:26,850 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 09:22:03] 2025-11-26 14:21:27,024 | INFO     | fitting pss+swap vs Time
[2025-11-26 09:22:03] 2025-11-26 14:21:27,027 | INFO     | sum of square deviations: 2352686131602.3047
[2025-11-26 09:22:03] 2025-11-26 14:21:27,086 | INFO     | time since job start (119962s) is within the limit (172800.0s)
[2025-11-26 09:22:03] 2025-11-26 14:21:27,176 | INFO     | sum of deviations: 8843019344924.357
[2025-11-26 09:22:03] 2025-11-26 14:21:27,177 | INFO     | mean x: 1764106939.9811704
[2025-11-26 09:22:03] 2025-11-26 14:21:27,177 | INFO     | mean y: 3158350.604071247
[2025-11-26 09:22:03] 2025-11-26 14:21:27,177 | INFO     | intersect: -6627573895.071363
[2025-11-26 09:22:03] 2025-11-26 14:21:27,179 | INFO     | chi2: 9.890263713977005
[2025-11-26 09:22:03] 2025-11-26 14:21:27,200 | INFO     | sum of square deviations: 2334774056787.752
[2025-11-26 09:22:03] 2025-11-26 14:21:27,414 | INFO     | sum of deviations: 9619001733265.494
[2025-11-26 09:22:03] 2025-11-26 14:21:27,414 | INFO     | mean x: 1764106787.4887755
[2025-11-26 09:22:03] 2025-11-26 14:21:27,414 | INFO     | mean y: 3164956.772959184
[2025-11-26 09:22:03] 2025-11-26 14:21:27,414 | INFO     | intersect: -7264752980.376946
[2025-11-26 09:22:03] 2025-11-26 14:21:27,416 | INFO     | chi2: 6.3462012956906575
[2025-11-26 09:22:03] 2025-11-26 14:21:27,416 | INFO     | current chi2=6.3462012956906575 (change=35.83385156128697 %)
[2025-11-26 09:22:03] 2025-11-26 14:21:27,423 | INFO     | sum of square deviations: 2316952310533.897
[2025-11-26 09:22:03] 2025-11-26 14:21:27,540 | INFO     | monitor loop #7125: job 0:6895355700 is in state 'finished'
[2025-11-26 09:22:03] 2025-11-26 14:21:27,540 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 09:22:03] 2025-11-26 14:21:27,778 | INFO     | sum of deviations: 10010151033477.236
[2025-11-26 09:22:03] 2025-11-26 14:21:27,778 | INFO     | mean x: 1764106634.9928389
[2025-11-26 09:22:03] 2025-11-26 14:21:27,779 | INFO     | mean y: 3168301.587723785
[2025-11-26 09:22:03] 2025-11-26 14:21:27,779 | INFO     | intersect: -7618470596.697777
[2025-11-26 09:22:03] 2025-11-26 14:21:27,795 | INFO     | chi2: 5.142363960520282
[2025-11-26 09:22:03] 2025-11-26 14:21:27,795 | INFO     | current chi2=5.142363960520282 (change=18.969416176379912 %)
[2025-11-26 09:22:03] 2025-11-26 14:21:27,796 | INFO     | right removable region: 1954
[2025-11-26 09:22:03] 2025-11-26 14:21:27,798 | INFO     | sum of square deviations: 2334770483407.755
[2025-11-26 09:22:03] 2025-11-26 14:21:28,001 | INFO     | sum of deviations: 8060367000973.19
[2025-11-26 09:22:03] 2025-11-26 14:21:28,008 | INFO     | mean x: 1764107092.4887755
[2025-11-26 09:22:03] 2025-11-26 14:21:28,008 | INFO     | mean y: 3165011.5091836737
[2025-11-26 09:22:03] 2025-11-26 14:21:28,009 | INFO     | intersect: -6087091266.583378
[2025-11-26 09:22:03] 2025-11-26 14:21:28,011 | INFO     | chi2: 6.486129071290426
[2025-11-26 09:22:03] 2025-11-26 14:21:28,011 | INFO     | current chi2=6.486129071290426 (change=34.41904827952996 %)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,025 | INFO     | sum of square deviations: 2316947075277.8687
[2025-11-26 09:22:03] 2025-11-26 14:21:28,485 | INFO     | sum of deviations: 7757036731628.663
[2025-11-26 09:22:03] 2025-11-26 14:21:28,485 | INFO     | mean x: 1764107244.9918158
[2025-11-26 09:22:03] 2025-11-26 14:21:28,486 | INFO     | mean y: 3167605.854731458
[2025-11-26 09:22:03] 2025-11-26 14:21:28,486 | INFO     | intersect: -5902985730.121933
[2025-11-26 09:22:03] 2025-11-26 14:21:28,488 | INFO     | chi2: 6.035218503885624
[2025-11-26 09:22:03] 2025-11-26 14:21:28,489 | INFO     | current chi2=6.035218503885624 (change=6.9519209754962885 %)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,489 | INFO     | left removable region: 20
[2025-11-26 09:22:03] 2025-11-26 14:21:28,491 | INFO     | sum of square deviations: 2243082257825.0376
[2025-11-26 09:22:03] 2025-11-26 14:21:28,684 | INFO     | sum of deviations: 8553342706325.32
[2025-11-26 09:22:03] 2025-11-26 14:21:28,685 | INFO     | mean x: 1764107214.515512
[2025-11-26 09:22:03] 2025-11-26 14:21:28,685 | INFO     | mean y: 3181330.1732161324
[2025-11-26 09:22:03] 2025-11-26 14:21:28,685 | INFO     | intersect: -6723729162.660385
[2025-11-26 09:22:03] 2025-11-26 14:21:28,691 | INFO     | chi2: 0.9988036533183252
[2025-11-26 09:22:03] 2025-11-26 14:21:28,691 | INFO     | current memory leak: 3.81 B/s (using 1934 data points, chi2=1.00)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,697 | INFO     | could have reported an average CPU frequency of 2919 MHz (69 samples)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,699 | INFO     | ..............................
[2025-11-26 09:22:03] 2025-11-26 14:21:28,699 | INFO     | . Timing measurements:
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . get job = 0 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . initial setup = 3 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . payload setup = 32 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . stage-in = 0 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . payload execution = 119842 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . stage-out = 10 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | . log creation = 1 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,700 | INFO     | ..............................
[2025-11-26 09:22:03] 2025-11-26 14:21:28,923 | INFO     | 
[2025-11-26 09:22:03] 2025-11-26 14:21:28,924 | INFO     | job summary report
[2025-11-26 09:22:03] 2025-11-26 14:21:28,926 | INFO     | --------------------------------------------------
[2025-11-26 09:22:03] 2025-11-26 14:21:28,926 | INFO     | PanDA job id: 6895355700
[2025-11-26 09:22:03] 2025-11-26 14:21:28,926 | INFO     | task id: 47556137
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | errors: (none)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | pilot state: finished 
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | transexitcode: 0
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | exeerrorcode: 0
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | exeerrordiag: 
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | exitcode: 0
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | exitmsg: OK
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | cpuconsumptiontime: 254964 s
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | nevents: 1000
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | neventsw: 0
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | pid: 3571388
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | pgrp: 3571388
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | corecount: 9
[2025-11-26 09:22:03] 2025-11-26 14:21:28,927 | INFO     | event service: False
[2025-11-26 09:22:03] 2025-11-26 14:21:28,928 | INFO     | sizes: {0: 2284139, 1: 2284338, 12: 2284338, 23: 2284366, 26: 2284656, 34: 2284684, 119875: 2364894, 119876: 2364893, 119888: 2373948, 119889: 2374004, 119906: 237
[2025-11-26 09:22:03] 2025-11-26 14:21:28,928 | INFO     | --------------------------------------------------
[2025-11-26 09:22:03] 2025-11-26 14:21:28,928 | INFO     | 
[2025-11-26 09:22:03] 2025-11-26 14:21:28,928 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 09:22:03] 2025-11-26 14:21:28,980 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,981 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 09:22:03] 2025-11-26 14:21:28,982 | INFO     | job 6895355700 has completed (purged errors)
[2025-11-26 09:22:03] 2025-11-26 14:21:28,983 | INFO     | overall cleanup function is called
[2025-11-26 09:22:03] 2025-11-26 14:21:30,015 | INFO     | --- collectZombieJob: --- 10, [3571388]
[2025-11-26 09:22:03] 2025-11-26 14:21:30,015 | INFO     | zombie collector waiting for pid 3571388
[2025-11-26 09:22:03] 2025-11-26 14:21:30,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 09:22:03] 2025-11-26 14:21:30,015 | INFO     | collected zombie processes
[2025-11-26 09:22:03] 2025-11-26 14:21:30,015 | INFO     | will attempt to kill all subprocesses of pid=3571388
[2025-11-26 09:22:03] 2025-11-26 14:21:31,154 | INFO     | process IDs to be killed: [3571388] (in reverse order)
[2025-11-26 09:22:03] 2025-11-26 14:21:31,331 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 09:22:03] 2025-11-26 14:21:31,331 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 09:22:03] 2025-11-26 14:21:31,349 | INFO     | did not find any defunct processes belonging to 3571388
[2025-11-26 09:22:03] 2025-11-26 14:21:31,372 | INFO     | did not find any defunct processes belonging to 3571388
[2025-11-26 09:22:03] 2025-11-26 14:21:31,373 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 09:22:03] 2025-11-26 14:21:31,374 | INFO     | ready for new job
[2025-11-26 09:22:03] 2025-11-26 14:21:31,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 09:22:03] 2025-11-26 14:21:31,382 | INFO     | ***************************************
[2025-11-26 09:22:03] 2025-11-26 14:21:31,382 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 09:22:03] 2025-11-26 14:21:31,382 | INFO     | ***************************************
[2025-11-26 09:22:03] 2025-11-26 14:21:31,382 | INFO     | 
[2025-11-26 09:22:03] 2025-11-26 14:21:31,386 | INFO     | architecture information:
[2025-11-26 09:22:03] 2025-11-26 14:21:31,387 | INFO     | executing command: cat /etc/os-release
[2025-11-26 09:22:03] 2025-11-26 14:21:31,443 | INFO     | cat /etc/os-release:
[2025-11-26 09:22:03] NAME="CentOS Linux"
[2025-11-26 09:22:03] VERSION="7 (Core)"
[2025-11-26 09:22:03] ID="centos"
[2025-11-26 09:22:03] ID_LIKE="rhel fedora"
[2025-11-26 09:22:03] VERSION_ID="7"
[2025-11-26 09:22:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 09:22:03] ANSI_COLOR="0;31"
[2025-11-26 09:22:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 09:22:03] HOME_URL="https://www.centos.org/"
[2025-11-26 09:22:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 09:22:03] 
[2025-11-26 09:22:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 09:22:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 09:22:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 09:22:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 09:22:03] 
[2025-11-26 09:22:03] 2025-11-26 14:21:31,444 | INFO     | ***************************************
[2025-11-26 09:22:03] 2025-11-26 14:21:31,961 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 09:22:03] 2025-11-26 14:21:32,124 | INFO     | sufficient remaining disk space (69354913792 B)
[2025-11-26 09:22:03] 2025-11-26 14:21:32,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 09:22:03] 2025-11-26 14:21:32,125 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 09:22:03] 2025-11-26 14:21:32,125 | INFO     | update_server=False
[2025-11-26 09:22:03] 2025-11-26 14:21:32,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 09:22:03] 2025-11-26 14:21:32,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 09:22:03] 2025-11-26 14:21:32,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 09:22:03] 2025-11-26 14:21:32,604 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 09:22:03] 2025-11-26 14:21:32,604 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 09:22:03] 2025-11-26 14:21:32,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:22:03] 2025-11-26 14:21:32,604 | INFO     | will abort loop
[2025-11-26 09:22:03] 2025-11-26 14:21:33,071 | INFO     | all data control threads have been joined
[2025-11-26 09:22:03] 2025-11-26 14:21:33,131 | INFO     | [job] retrieve thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:33,143 | INFO     | all payload control threads have been joined
[2025-11-26 09:22:03] 2025-11-26 14:21:33,185 | INFO     | [data] copytool_in thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:33,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:33,619 | INFO     | [job] job monitor thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:33,835 | INFO     | all job control threads have been joined
[2025-11-26 09:22:03] 2025-11-26 14:21:33,850 | INFO     | [job] validate thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:33,867 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,018 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 09:22:03] 2025-11-26 14:21:34,059 | INFO     | [payload] failed_post thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,076 | INFO     | [data] control thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,151 | INFO     | [payload] control thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,152 | INFO     | [data] copytool_out thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,321 | INFO     | [payload] validate_post thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,653 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:34,841 | INFO     | [job] control thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:35,026 | INFO     | [job] queue monitor thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:36,171 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 09:22:03] 2025-11-26 14:21:48,297 | INFO     | [monitor] cgroup control has ended
[2025-11-26 09:22:03] 2025-11-26 14:21:50,162 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140156644874048)>', '<ExcThread(monitor, started 140156300412672)>']
[2025-11-26 09:22:03] 2025-11-26 14:21:55,188 | INFO     | all workflow threads have been joined
[2025-11-26 09:22:03] 2025-11-26 14:21:55,188 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 09:22:03] 2025-11-26 14:21:55,189 | INFO     | traces error code: 0
[2025-11-26 09:22:03] 2025-11-26 14:21:55,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 09:22:03] 2025-11-26 14:22:01,619 | INFO     | PID=3552081 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 09:22:03] 2025-11-26 14:22:01,621 | INFO     | .. there are 26 such processes running
[2025-11-26 09:22:03] 2025-11-26 14:22:01,621 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 09:22:03] 2025-11-26 14:22:01,621 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 09:22:03] 2025-11-26 14:22:01,622 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 09:22:03] 2025-11-26 14:22:01,622 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 09:22:03] 2025-11-26 14:22:01,622 | INFO     | [monitor] control thread has ended
[2025-11-26 09:22:03] 2025-11-26 14:22:02,484 [wrapper] ==== pilot stdout END ====
[2025-11-26 09:22:03] 2025-11-26 14:22:02,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 09:22:03] 2025-11-26 14:22:02,630 [wrapper] pilotpid: 3552081
[2025-11-26 09:22:03] 2025-11-26 14:22:02,727 [wrapper] Pilot exit status: 0
[2025-11-26 09:22:03] 2025-11-26 14:22:02,952 [wrapper] pandaids: 6895355700
[2025-11-26 09:22:03] 2025-11-26 14:22:03,065 [wrapper] cleanup supervisor_pilot 1108730 3552082
[2025-11-26 09:22:03] 2025-11-26 14:22:03,069 [wrapper] Test setup, not cleaning
[2025-11-26 09:22:03] 2025-11-26 14:22:03,072 [wrapper] apfmon messages muted
[2025-11-26 09:22:03] 2025-11-26 14:22:03,074 [wrapper] ==== wrapper stdout END ====
[2025-11-26 09:22:03] 2025-11-26 14:22:03,077 [wrapper] ==== wrapper stderr END ====
[2025-11-26 09:22:03]  *** Error codes and diagnostics ***
[2025-11-26 09:22:03]     "exeErrorCode": 0,
[2025-11-26 09:22:03]     "exeErrorDiag": "",
[2025-11-26 09:22:03]     "pilotErrorCode": 0,
[2025-11-26 09:22:03]     "pilotErrorDiag": "",
[2025-11-26 09:22:03]  *** Listing of results directory ***
[2025-11-26 09:22:03] total 1354928
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 03:03 pilot3.tar.gz
[2025-11-26 09:22:03] -rwx------. 1 boincer umatlas     36292 Nov 23 03:23 runpilot2-wrapper.sh
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 03:23 queuedata.json
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 09:22:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:01 run_atlas
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:01 job.xml
[2025-11-26 09:22:03] -rw-r--r--. 2 boincer umatlas 410049983 Nov 25 00:01 EVNT.47483658._000671.pool.root.1
[2025-11-26 09:22:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 09:22:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:01 shared
[2025-11-26 09:22:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:01 input.tar.gz
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:01 boinc_lockfile
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:01 pandaJob.out
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas        57 Nov 25 00:01 setup.sh.local
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas    991801 Nov 25 00:02 agis_schedconf.cvmfs.json
[2025-11-26 09:22:03] drwx------. 5 boincer umatlas      4096 Nov 25 00:02 pilot3
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas       533 Nov 26 09:09 boinc_task_state.xml
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas      6842 Nov 26 09:14 init_data.xml
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas 937632586 Nov 26 09:20 HITS.47556137._006663.pool.root.1
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas      1058 Nov 26 09:20 memory_monitor_summary.json
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas   1516240 Nov 26 09:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas   2929655 Nov 26 09:21 log.47556137._006663.job.log.tgz.1
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas        95 Nov 26 09:21 pilot_heartbeat.json
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas      8638 Nov 26 09:21 heartbeat.json
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 09:22 boinc_mmap_file
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas       823 Nov 26 09:22 pilotlog.txt
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas        29 Nov 26 09:22 wrapper_checkpoint.txt
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas  14993032 Nov 26 09:22 log.47556137._006663.job.log.1
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas       353 Nov 26 09:22 output.list
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas       620 Nov 26 09:22 runtime_log
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas  17940480 Nov 26 09:22 result.tar.gz
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas       663 Nov 26 09:22 uOmNDm3YKh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQUIKDm7lfnPm.diag
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 09:22 runtime_log.err
[2025-11-26 09:22:03] -rw-r--r--. 1 boincer umatlas     21378 Nov 26 09:22 stderr.txt
[2025-11-26 09:22:03] HITS file was successfully produced:
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas 937632586 Nov 26 09:20 shared/HITS.pool.root.1
[2025-11-26 09:22:03]  *** Contents of shared directory: ***
[2025-11-26 09:22:03] total 1334224
[2025-11-26 09:22:03] -rw-r--r--. 2 boincer umatlas 410049983 Nov 25 00:01 ATLAS.root_0
[2025-11-26 09:22:03] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:01 start_atlas.sh
[2025-11-26 09:22:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:01 input.tar.gz
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas 937632586 Nov 26 09:20 HITS.pool.root.1
[2025-11-26 09:22:03] -rw-------. 1 boincer umatlas  17940480 Nov 26 09:22 result.tar.gz
09:22:26 (3543021): run_atlas exited; CPU time 257463.801252
09:22:26 (3543021): called boinc_finish(0)

</stderr_txt>
]]>

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