Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:49 (1440658): wrapper (7.7.26015): starting
00:11:49 (1440658): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:11:49] Arguments: --nthreads 8
[2025-11-25 00:11:49] Threads: 8
[2025-11-25 00:11:49] Checking for CVMFS
[2025-11-25 00:11:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:11:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:11:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:11:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:11:50] 2.13.3.0 9358 26479 232300 153270 1 425 32245084 32935936 28972 16776704 0 141194069 99.791 75676495 33447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:11:50] CVMFS is ok
[2025-11-25 00:11:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:11:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:11:50] Further information can be found at the LHC@home message board.
[2025-11-25 00:11:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:11:50] Checking for apptainer binary...
[2025-11-25 00:11:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:11:50] Running /usr/bin/apptainer --version
[2025-11-25 00:11:50] apptainer version 1.4.4-1.el9
[2025-11-25 00:11:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:11:50] c-6-6.aglt2.org
[2025-11-25 00:11:50] apptainer works
[2025-11-25 00:11:50] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:11:50] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:11:50] Starting ATLAS job with PandaID=6895384476
[2025-11-25 00:11:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 15:48:48]  *** The last 200 lines of the pilot log: ***
[2025-11-25 15:48:48] 2025-11-25 20:47:53,725 | INFO     | fitting pss+swap vs Time
[2025-11-25 15:48:48] 2025-11-25 20:47:53,726 | INFO     | sum of square deviations: 241461408281.32123
[2025-11-25 15:48:48] 2025-11-25 20:47:53,747 | INFO     | sum of deviations: 1366666072135.2102
[2025-11-25 15:48:48] 2025-11-25 20:47:53,747 | INFO     | mean x: 1764075586.1826086
[2025-11-25 15:48:48] 2025-11-25 20:47:53,747 | INFO     | mean y: 2863499.7130434783
[2025-11-25 15:48:48] 2025-11-25 20:47:53,747 | INFO     | intersect: -9981764145.251722
[2025-11-25 15:48:48] 2025-11-25 20:47:53,749 | INFO     | chi2: 7.511226979794809
[2025-11-25 15:48:48] 2025-11-25 20:47:53,750 | INFO     | sum of square deviations: 237546140358.97928
[2025-11-25 15:48:48] 2025-11-25 20:47:53,770 | INFO     | sum of deviations: 1682866781879.8418
[2025-11-25 15:48:48] 2025-11-25 20:47:53,770 | INFO     | mean x: 1764075433.686339
[2025-11-25 15:48:48] 2025-11-25 20:47:53,770 | INFO     | mean y: 2875816.0273224046
[2025-11-25 15:48:48] 2025-11-25 20:47:53,770 | INFO     | intersect: -12494502350.56682
[2025-11-25 15:48:48] 2025-11-25 20:47:53,772 | INFO     | chi2: 4.151991795436511
[2025-11-25 15:48:48] 2025-11-25 20:47:53,772 | INFO     | current chi2=4.151991795436511 (change=44.722855445516906 %)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,773 | INFO     | sum of square deviations: 233673431374.11078
[2025-11-25 15:48:48] 2025-11-25 20:47:53,793 | INFO     | sum of deviations: 1868372395202.1614
[2025-11-25 15:48:48] 2025-11-25 20:47:53,795 | INFO     | mean x: 1764075281.19011
[2025-11-25 15:48:48] 2025-11-25 20:47:53,795 | INFO     | mean y: 2883109.1956043956
[2025-11-25 15:48:48] 2025-11-25 20:47:53,795 | INFO     | intersect: -14102056160.332571
[2025-11-25 15:48:48] 2025-11-25 20:47:53,797 | INFO     | chi2: 2.6247777155722907
[2025-11-25 15:48:48] 2025-11-25 20:47:53,797 | INFO     | current chi2=2.6247777155722907 (change=36.78268539795272 %)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,798 | INFO     | sum of square deviations: 229842993376.60428
[2025-11-25 15:48:48] 2025-11-25 20:47:53,818 | INFO     | sum of deviations: 1877886258156.149
[2025-11-25 15:48:48] 2025-11-25 20:47:53,818 | INFO     | mean x: 1764075128.6928177
[2025-11-25 15:48:48] 2025-11-25 20:47:53,818 | INFO     | mean y: 2883485.3458563536
[2025-11-25 15:48:48] 2025-11-25 20:47:53,818 | INFO     | intersect: -14410139917.544117
[2025-11-25 15:48:48] 2025-11-25 20:47:53,820 | INFO     | chi2: 2.5672298499076365
[2025-11-25 15:48:48] 2025-11-25 20:47:53,820 | INFO     | current chi2=2.5672298499076365 (change=2.1924853035452876 %)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,820 | INFO     | right removable region: 904
[2025-11-25 15:48:48] 2025-11-25 20:47:53,821 | INFO     | sum of square deviations: 237545757278.97934
[2025-11-25 15:48:48] 2025-11-25 20:47:53,840 | INFO     | sum of deviations: 1114152257270.6443
[2025-11-25 15:48:48] 2025-11-25 20:47:53,841 | INFO     | mean x: 1764075738.686339
[2025-11-25 15:48:48] 2025-11-25 20:47:53,841 | INFO     | mean y: 2873320.3715846995
[2025-11-25 15:48:48] 2025-11-25 20:47:53,841 | INFO     | intersect: -8271107190.867326
[2025-11-25 15:48:48] 2025-11-25 20:47:53,842 | INFO     | chi2: 5.191197549740164
[2025-11-25 15:48:48] 2025-11-25 20:47:53,842 | INFO     | current chi2=5.191197549740164 (change=30.88748930495005 %)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,843 | INFO     | sum of square deviations: 233672720785.49
[2025-11-25 15:48:48] 2025-11-25 20:47:53,868 | INFO     | sum of deviations: 1044129063017.4272
[2025-11-25 15:48:48] 2025-11-25 20:47:53,868 | INFO     | mean x: 1764075891.189011
[2025-11-25 15:48:48] 2025-11-25 20:47:53,868 | INFO     | mean y: 2876076.4626373625
[2025-11-25 15:48:48] 2025-11-25 20:47:53,869 | INFO     | intersect: -7879614019.801908
[2025-11-25 15:48:48] 2025-11-25 20:47:53,875 | INFO     | chi2: 5.109314923462925
[2025-11-25 15:48:48] 2025-11-25 20:47:53,875 | INFO     | current chi2=5.109314923462925 (change=1.577335970990695 %)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,875 | INFO     | left removable region: 20
[2025-11-25 15:48:48] 2025-11-25 20:47:53,876 | INFO     | sum of square deviations: 214211083165.3484
[2025-11-25 15:48:48] 2025-11-25 20:47:53,894 | INFO     | sum of deviations: 1448402140683.8684
[2025-11-25 15:48:48] 2025-11-25 20:47:53,895 | INFO     | mean x: 1764075708.20362
[2025-11-25 15:48:48] 2025-11-25 20:47:53,895 | INFO     | mean y: 2900389.478506787
[2025-11-25 15:48:48] 2025-11-25 20:47:53,895 | INFO     | intersect: -11925011996.447266
[2025-11-25 15:48:48] 2025-11-25 20:47:53,896 | INFO     | chi2: 0.08660094062776412
[2025-11-25 15:48:48] 2025-11-25 20:47:53,896 | INFO     | current memory leak: 6.76 B/s (using 884 data points, chi2=0.09)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,897 | INFO     | could have reported an average CPU frequency of 2600 MHz (34 samples)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,897 | INFO     | ..............................
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . Timing measurements:
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . get job = 0 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . initial setup = 3 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . payload setup = 7 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . stage-in = 0 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . payload execution = 56100 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . stage-out = 3 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | . log creation = 0 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,898 | INFO     | ..............................
[2025-11-25 15:48:48] 2025-11-25 20:47:53,995 | INFO     | 
[2025-11-25 15:48:48] 2025-11-25 20:47:53,996 | INFO     | job summary report
[2025-11-25 15:48:48] 2025-11-25 20:47:53,996 | INFO     | --------------------------------------------------
[2025-11-25 15:48:48] 2025-11-25 20:47:53,996 | INFO     | PanDA job id: 6895384476
[2025-11-25 15:48:48] 2025-11-25 20:47:53,996 | INFO     | task id: 47556161
[2025-11-25 15:48:48] 2025-11-25 20:47:53,996 | INFO     | errors: (none)
[2025-11-25 15:48:48] 2025-11-25 20:47:53,996 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | pilot state: finished 
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | transexitcode: 0
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | exeerrorcode: 0
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | exeerrordiag: 
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | exitcode: 0
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | exitmsg: OK
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | cpuconsumptiontime: 299841 s
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | nevents: 1000
[2025-11-25 15:48:48] 2025-11-25 20:47:53,997 | INFO     | neventsw: 0
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | pid: 1452020
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | pgrp: 1452020
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | corecount: 8
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | event service: False
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | sizes: {0: 2284304, 6: 2284566, 11: 2284594, 56112: 2336986, 56117: 2345985, 56121: 2346041, 56133: 2346415}
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | --------------------------------------------------
[2025-11-25 15:48:48] 2025-11-25 20:47:53,998 | INFO     | 
[2025-11-25 15:48:48] 2025-11-25 20:47:53,999 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-25 15:48:48] 2025-11-25 20:47:54,310 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,310 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,330 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,330 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,332 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,332 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 15:48:48] 2025-11-25 20:47:54,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,332 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 15:48:48] 2025-11-25 20:47:54,332 | INFO     | job 6895384476 has completed (purged errors)
[2025-11-25 15:48:48] 2025-11-25 20:47:54,332 | INFO     | overall cleanup function is called
[2025-11-25 15:48:48] 2025-11-25 20:47:55,351 | INFO     | --- collectZombieJob: --- 10, [1452020]
[2025-11-25 15:48:48] 2025-11-25 20:47:55,352 | INFO     | zombie collector waiting for pid 1452020
[2025-11-25 15:48:48] 2025-11-25 20:47:55,352 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 15:48:48] 2025-11-25 20:47:55,352 | INFO     | collected zombie processes
[2025-11-25 15:48:48] 2025-11-25 20:47:55,352 | INFO     | will attempt to kill all subprocesses of pid=1452020
[2025-11-25 15:48:48] 2025-11-25 20:47:55,872 | INFO     | process IDs to be killed: [1452020] (in reverse order)
[2025-11-25 15:48:48] 2025-11-25 20:47:56,043 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 15:48:48] 2025-11-25 20:47:56,043 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 15:48:48] 2025-11-25 20:47:56,116 | INFO     | did not find any defunct processes belonging to 1452020
[2025-11-25 15:48:48] 2025-11-25 20:47:56,135 | INFO     | did not find any defunct processes belonging to 1452020
[2025-11-25 15:48:48] 2025-11-25 20:47:56,137 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 15:48:48] 2025-11-25 20:47:56,137 | INFO     | ready for new job
[2025-11-25 15:48:48] 2025-11-25 20:47:56,137 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 15:48:48] 2025-11-25 20:47:56,142 | INFO     | ***************************************
[2025-11-25 15:48:48] 2025-11-25 20:47:56,142 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 15:48:48] 2025-11-25 20:47:56,142 | INFO     | ***************************************
[2025-11-25 15:48:48] 2025-11-25 20:47:56,142 | INFO     | 
[2025-11-25 15:48:48] 2025-11-25 20:47:56,144 | INFO     | architecture information:
[2025-11-25 15:48:48] 2025-11-25 20:47:56,145 | INFO     | executing command: cat /etc/os-release
[2025-11-25 15:48:48] 2025-11-25 20:47:56,175 | INFO     | cat /etc/os-release:
[2025-11-25 15:48:48] NAME="CentOS Linux"
[2025-11-25 15:48:48] VERSION="7 (Core)"
[2025-11-25 15:48:48] ID="centos"
[2025-11-25 15:48:48] ID_LIKE="rhel fedora"
[2025-11-25 15:48:48] VERSION_ID="7"
[2025-11-25 15:48:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 15:48:48] ANSI_COLOR="0;31"
[2025-11-25 15:48:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 15:48:48] HOME_URL="https://www.centos.org/"
[2025-11-25 15:48:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 15:48:48] 
[2025-11-25 15:48:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 15:48:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 15:48:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 15:48:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 15:48:48] 
[2025-11-25 15:48:48] 2025-11-25 20:47:56,175 | INFO     | ***************************************
[2025-11-25 15:48:48] 2025-11-25 20:47:56,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-25 15:48:48] 2025-11-25 20:47:56,860 | INFO     | sufficient remaining disk space (71045218304 B)
[2025-11-25 15:48:48] 2025-11-25 20:47:56,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 15:48:48] 2025-11-25 20:47:56,860 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 15:48:48] 2025-11-25 20:47:56,861 | INFO     | update_server=False
[2025-11-25 15:48:48] 2025-11-25 20:47:56,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 15:48:48] 2025-11-25 20:47:56,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 15:48:48] 2025-11-25 20:47:56,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 15:48:48] 2025-11-25 20:47:56,921 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 15:48:48] 2025-11-25 20:47:56,921 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 15:48:48] 2025-11-25 20:47:56,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:48:48] 2025-11-25 20:47:56,923 | INFO     | will abort loop
[2025-11-25 15:48:48] 2025-11-25 20:47:57,451 | INFO     | all payload control threads have been joined
[2025-11-25 15:48:48] 2025-11-25 20:47:57,606 | INFO     | all job control threads have been joined
[2025-11-25 15:48:48] 2025-11-25 20:47:57,869 | INFO     | [job] retrieve thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:57,922 | INFO     | all data control threads have been joined
[2025-11-25 15:48:48] 2025-11-25 20:47:57,934 | INFO     | [job] job monitor thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,121 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,248 | INFO     | [payload] validate_post thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,381 | INFO     | [job] validate thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,400 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,458 | INFO     | [payload] control thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,615 | INFO     | [job] control thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,713 | INFO     | [payload] failed_post thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,870 | INFO     | [data] copytool_out thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:58,928 | INFO     | [data] control thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:59,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 15:48:48] 2025-11-25 20:47:59,255 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:47:59,315 | INFO     | [data] copytool_in thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:48:00,017 | INFO     | [job] queue monitor thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:48:00,920 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 15:48:48] 2025-11-25 20:48:26,283 | INFO     | PID=1444324 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 15:48:48] 2025-11-25 20:48:26,283 | INFO     | .. there are 42 such processes running
[2025-11-25 15:48:48] 2025-11-25 20:48:26,284 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 15:48:48] 2025-11-25 20:48:26,284 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 15:48:48] 2025-11-25 20:48:26,284 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 15:48:48] 2025-11-25 20:48:41,816 | INFO     | [monitor] cgroup control has ended
[2025-11-25 15:48:48] 2025-11-25 20:48:43,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139852306872128)>', '<ExcThread(monitor, started 139851953321728)>']
[2025-11-25 15:48:48] 2025-11-25 20:48:43,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 15:48:48] 2025-11-25 20:48:43,389 | INFO     | [monitor] control thread has ended
[2025-11-25 15:48:48] 2025-11-25 20:48:48,116 | INFO     | all workflow threads have been joined
[2025-11-25 15:48:48] 2025-11-25 20:48:48,116 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 15:48:48] 2025-11-25 20:48:48,116 | INFO     | traces error code: 0
[2025-11-25 15:48:48] 2025-11-25 20:48:48,116 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 15:48:48] 2025-11-25 20:48:48,304 [wrapper] ==== pilot stdout END ====
[2025-11-25 15:48:48] 2025-11-25 20:48:48,307 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 15:48:48] 2025-11-25 20:48:48,310 [wrapper] pilotpid: 1444324
[2025-11-25 15:48:48] 2025-11-25 20:48:48,312 [wrapper] Pilot exit status: 0
[2025-11-25 15:48:48] 2025-11-25 20:48:48,326 [wrapper] pandaids: 6895384476
[2025-11-25 15:48:48] 2025-11-25 20:48:48,407 [wrapper] cleanup supervisor_pilot   64171 1444325
[2025-11-25 15:48:48] 2025-11-25 20:48:48,410 [wrapper] Test setup, not cleaning
[2025-11-25 15:48:48] 2025-11-25 20:48:48,413 [wrapper] apfmon messages muted
[2025-11-25 15:48:48] 2025-11-25 20:48:48,416 [wrapper] ==== wrapper stdout END ====
[2025-11-25 15:48:48] 2025-11-25 20:48:48,419 [wrapper] ==== wrapper stderr END ====
[2025-11-25 15:48:48]  *** Error codes and diagnostics ***
[2025-11-25 15:48:48]     "exeErrorCode": 0,
[2025-11-25 15:48:48]     "exeErrorDiag": "",
[2025-11-25 15:48:48]     "pilotErrorCode": 0,
[2025-11-25 15:48:48]     "pilotErrorDiag": "",
[2025-11-25 15:48:48]  *** Listing of results directory ***
[2025-11-25 15:48:48] total 1305224
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 00:03 queuedata.json
[2025-11-25 15:48:48] -rwx------. 1 boincer umatlas     36292 Nov 24 00:04 runpilot2-wrapper.sh
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 15:48:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:11 run_atlas
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:11 job.xml
[2025-11-25 15:48:48] -rw-r--r--. 2 boincer umatlas 406857083 Nov 25 00:11 EVNT.47483658._002017.pool.root.1
[2025-11-25 15:48:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:11 shared
[2025-11-25 15:48:48] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:11 input.tar.gz
[2025-11-25 15:48:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:11 boinc_lockfile
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 00:11 pandaJob.out
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas        57 Nov 25 00:11 setup.sh.local
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas    991801 Nov 25 00:12 agis_schedconf.cvmfs.json
[2025-11-25 15:48:48] drwx------. 5 boincer umatlas      4096 Nov 25 00:12 pilot3
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas       533 Nov 25 15:32 boinc_task_state.xml
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas 906207346 Nov 25 15:46 HITS.47556161._000009.pool.root.1
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas      6659 Nov 25 15:47 init_data.xml
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas      1058 Nov 25 15:47 memory_monitor_summary.json
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas        95 Nov 25 15:47 pilot_heartbeat.json
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas   1516240 Nov 25 15:47 agis_ddmendpoints.agis.ALL.json
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas   2120789 Nov 25 15:47 log.47556161._000009.job.log.tgz.1
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas      8625 Nov 25 15:47 heartbeat.json
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 15:48 boinc_mmap_file
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas        29 Nov 25 15:48 wrapper_checkpoint.txt
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas      5010 Nov 25 15:48 pilotlog.txt
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas   7660858 Nov 25 15:48 log.47556161._000009.job.log.1
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas       353 Nov 25 15:48 output.list
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas       620 Nov 25 15:48 runtime_log
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas   9799680 Nov 25 15:48 result.tar.gz
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas      9328 Nov 25 15:48 runtime_log.err
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas       658 Nov 25 15:48 GIIKDm6vdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRRLKDmDbGHdn.diag
[2025-11-25 15:48:48] -rw-r--r--. 1 boincer umatlas     21139 Nov 25 15:48 stderr.txt
[2025-11-25 15:48:48] HITS file was successfully produced:
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas 906207346 Nov 25 15:46 shared/HITS.pool.root.1
[2025-11-25 15:48:48]  *** Contents of shared directory: ***
[2025-11-25 15:48:48] total 1292468
[2025-11-25 15:48:48] -rw-r--r--. 2 boincer umatlas 406857083 Nov 25 00:11 ATLAS.root_0
[2025-11-25 15:48:48] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:11 input.tar.gz
[2025-11-25 15:48:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas 906207346 Nov 25 15:46 HITS.pool.root.1
[2025-11-25 15:48:48] -rw-------. 1 boincer umatlas   9799680 Nov 25 15:48 result.tar.gz
15:48:49 (1440658): run_atlas exited; CPU time 301499.458615
15:48:49 (1440658): called boinc_finish(0)

</stderr_txt>
]]>

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