Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:15 (1624997): wrapper (7.7.26015): starting
00:00:15 (1624997): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:00:15] Arguments: --nthreads 12
[2025-11-25 00:00:15] Threads: 12
[2025-11-25 00:00:15] Checking for CVMFS
[2025-11-25 00:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:16] 2.13.2.0 6751 32457 251792 153270 2 207 34629273 40960001 26456 16776704 0 94661980 99.592 97135394 36774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:00:16] CVMFS is ok
[2025-11-25 00:00:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:16] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:16] Checking for apptainer binary...
[2025-11-25 00:00:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:16] Running /usr/bin/apptainer --version
[2025-11-25 00:00:16] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:16] c-212-7.aglt2.org
[2025-11-25 00:00:16] apptainer works
[2025-11-25 00:00:16] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:00:16] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:00:16] Starting ATLAS job with PandaID=6895356030
[2025-11-25 00:00:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:33:59]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:33:59] 2025-11-26 02:32:33,374 | INFO     | time since job start (77520s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:33,601 | INFO     | monitor loop #4636: job 0:6895356030 is in state 'finished'
[2025-11-25 21:33:59] 2025-11-26 02:32:33,601 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:33:59] 2025-11-26 02:32:35,384 | INFO     | time since job start (77522s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:36,108 | INFO     | monitor loop #4637: job 0:6895356030 is in state 'finished'
[2025-11-25 21:33:59] 2025-11-26 02:32:36,108 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:33:59] 2025-11-26 02:32:37,405 | INFO     | time since job start (77524s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:38,613 | INFO     | monitor loop #4638: job 0:6895356030 is in state 'finished'
[2025-11-25 21:33:59] 2025-11-26 02:32:38,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:33:59] 2025-11-26 02:32:39,412 | INFO     | time since job start (77526s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:41,117 | INFO     | monitor loop #4639: job 0:6895356030 is in state 'finished'
[2025-11-25 21:33:59] 2025-11-26 02:32:41,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:33:59] 2025-11-26 02:32:41,426 | INFO     | time since job start (77528s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:43,480 | INFO     | time since job start (77530s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:43,627 | INFO     | monitor loop #4640: job 0:6895356030 is in state 'finished'
[2025-11-25 21:33:59] 2025-11-26 02:32:43,627 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 21:33:59] 2025-11-26 02:32:45,487 | INFO     | time since job start (77532s) is within the limit (172800.0s)
[2025-11-25 21:33:59] 2025-11-26 02:32:45,625 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 21:33:59] 2025-11-26 02:32:45,640 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3050.168437500002
[2025-11-25 21:33:59] 2025-11-26 02:32:45,678 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6895356030/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:33:59] 2025-11-26 02:32:45,679 | INFO     | extracted standard info from prmon json
[2025-11-25 21:33:59] 2025-11-26 02:32:45,679 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:33:59] 2025-11-26 02:32:45,679 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:33:59] 2025-11-26 02:32:45,749 | INFO     | fitting pss+swap vs Time
[2025-11-25 21:33:59] 2025-11-26 02:32:45,751 | INFO     | sum of square deviations: 635048657401.4669
[2025-11-25 21:33:59] 2025-11-26 02:32:45,825 | INFO     | sum of deviations: 5297889044771.072
[2025-11-25 21:33:59] 2025-11-26 02:32:45,825 | INFO     | mean x: 1764085584.0204725
[2025-11-25 21:33:59] 2025-11-26 02:32:45,825 | INFO     | mean y: 3342792.8818897638
[2025-11-25 21:33:59] 2025-11-26 02:32:45,826 | INFO     | intersect: -14713529025.827118
[2025-11-25 21:33:59] 2025-11-26 02:32:45,827 | INFO     | chi2: 21.450801407907754
[2025-11-25 21:33:59] 2025-11-26 02:32:45,828 | INFO     | sum of square deviations: 627578292705.9883
[2025-11-25 21:33:59] 2025-11-26 02:32:45,863 | INFO     | sum of deviations: 5880440850715.943
[2025-11-25 21:33:59] 2025-11-26 02:32:45,863 | INFO     | mean x: 1764085431.5422926
[2025-11-25 21:33:59] 2025-11-26 02:32:45,863 | INFO     | mean y: 3354681.777075099
[2025-11-25 21:33:59] 2025-11-26 02:32:45,863 | INFO     | intersect: -16526216459.164295
[2025-11-25 21:33:59] 2025-11-26 02:32:45,864 | INFO     | chi2: 17.13607206108971
[2025-11-25 21:33:59] 2025-11-26 02:32:45,865 | INFO     | current chi2=17.13607206108971 (change=20.114536817386394 %)
[2025-11-25 21:33:59] 2025-11-26 02:32:45,865 | INFO     | right removable region: 1264
[2025-11-25 21:33:59] 2025-11-26 02:32:45,866 | INFO     | sum of square deviations: 627574015995.9879
[2025-11-25 21:33:59] 2025-11-26 02:32:45,936 | INFO     | sum of deviations: 4733674468456.773
[2025-11-25 21:33:59] 2025-11-26 02:32:45,937 | INFO     | mean x: 1764085736.5422926
[2025-11-25 21:33:59] 2025-11-26 02:32:45,937 | INFO     | mean y: 3354304.0790513833
[2025-11-25 21:33:59] 2025-11-26 02:32:45,937 | INFO     | intersect: -13302817395.821917
[2025-11-25 21:33:59] 2025-11-26 02:32:45,938 | INFO     | chi2: 17.6900056190848
[2025-11-25 21:33:59] 2025-11-26 02:32:45,938 | INFO     | current chi2=17.6900056190848 (change=17.532192468280233 %)
[2025-11-25 21:33:59] 2025-11-26 02:32:45,938 | INFO     | left removable region: 10
[2025-11-25 21:33:59] 2025-11-26 02:32:45,939 | INFO     | sum of square deviations: 611341720363.6361
[2025-11-25 21:33:59] 2025-11-26 02:32:46,012 | INFO     | sum of deviations: 4869554609516.728
[2025-11-25 21:33:59] 2025-11-26 02:32:46,013 | INFO     | mean x: 1764085706.090909
[2025-11-25 21:33:59] 2025-11-26 02:32:46,013 | INFO     | mean y: 3379527.765550239
[2025-11-25 21:33:59] 2025-11-26 02:32:46,013 | INFO     | intersect: -14048191623.910305
[2025-11-25 21:33:59] 2025-11-26 02:32:46,014 | INFO     | chi2: 9.30722096944593
[2025-11-25 21:33:59] 2025-11-26 02:32:46,015 | INFO     | current memory leak: 7.97 B/s (using 1254 data points, chi2=9.31)
[2025-11-25 21:33:59] 2025-11-26 02:32:46,016 | INFO     | could have reported an average CPU frequency of 3053 MHz (46 samples)
[2025-11-25 21:33:59] 2025-11-26 02:32:46,016 | INFO     | ..............................
[2025-11-25 21:33:59] 2025-11-26 02:32:46,016 | INFO     | . Timing measurements:
[2025-11-25 21:33:59] 2025-11-26 02:32:46,016 | INFO     | . get job = 0 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | . initial setup = 3 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | . payload setup = 11 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | . stage-in = 0 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | . payload execution = 77468 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | . stage-out = 9 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | . log creation = 1 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,017 | INFO     | ..............................
[2025-11-25 21:33:59] 2025-11-26 02:32:46,909 | INFO     | 
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | job summary report
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | --------------------------------------------------
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | PanDA job id: 6895356030
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | task id: 47556137
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | errors: (none)
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | pilot state: finished 
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | transexitcode: 0
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | exeerrorcode: 0
[2025-11-25 21:33:59] 2025-11-26 02:32:46,947 | INFO     | exeerrordiag: 
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | exitcode: 0
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | exitmsg: OK
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | cpuconsumptiontime: 213747 s
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | nevents: 1000
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | neventsw: 0
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | pid: 1635329
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | pgrp: 1635329
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | corecount: 12
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | event service: False
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | sizes: {0: 2284259, 1: 2284259, 9: 2284549, 11: 2284577, 77482: 2345431, 77483: 2345430, 77492: 2354613, 77493: 2354669, 77513: 2354915}
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | --------------------------------------------------
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | 
[2025-11-25 21:33:59] 2025-11-26 02:32:46,948 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-25 21:33:59] 2025-11-26 02:32:47,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,079 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:33:59] 2025-11-26 02:32:47,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:33:59] 2025-11-26 02:32:47,081 | INFO     | job 6895356030 has completed (purged errors)
[2025-11-25 21:33:59] 2025-11-26 02:32:47,081 | INFO     | overall cleanup function is called
[2025-11-25 21:33:59] 2025-11-26 02:32:48,294 | INFO     | --- collectZombieJob: --- 10, [1635329]
[2025-11-25 21:33:59] 2025-11-26 02:32:48,294 | INFO     | zombie collector waiting for pid 1635329
[2025-11-25 21:33:59] 2025-11-26 02:32:48,294 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:33:59] 2025-11-26 02:32:48,294 | INFO     | collected zombie processes
[2025-11-25 21:33:59] 2025-11-26 02:32:48,294 | INFO     | will attempt to kill all subprocesses of pid=1635329
[2025-11-25 21:33:59] 2025-11-26 02:32:49,677 | INFO     | process IDs to be killed: [1635329] (in reverse order)
[2025-11-25 21:33:59] 2025-11-26 02:32:50,622 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:33:59] 2025-11-26 02:32:50,623 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:33:59] 2025-11-26 02:32:50,737 | INFO     | did not find any defunct processes belonging to 1635329
[2025-11-25 21:33:59] 2025-11-26 02:32:50,863 | INFO     | did not find any defunct processes belonging to 1635329
[2025-11-25 21:33:59] 2025-11-26 02:32:50,886 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:33:59] 2025-11-26 02:32:50,886 | INFO     | ready for new job
[2025-11-25 21:33:59] 2025-11-26 02:32:50,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:33:59] 2025-11-26 02:32:50,892 | INFO     | ***************************************
[2025-11-25 21:33:59] 2025-11-26 02:32:50,892 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:33:59] 2025-11-26 02:32:50,892 | INFO     | ***************************************
[2025-11-25 21:33:59] 2025-11-26 02:32:50,892 | INFO     | 
[2025-11-25 21:33:59] 2025-11-26 02:32:50,924 | INFO     | architecture information:
[2025-11-25 21:33:59] 2025-11-26 02:32:50,950 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:33:59] 2025-11-26 02:32:51,173 | INFO     | cat /etc/os-release:
[2025-11-25 21:33:59] NAME="CentOS Linux"
[2025-11-25 21:33:59] VERSION="7 (Core)"
[2025-11-25 21:33:59] ID="centos"
[2025-11-25 21:33:59] ID_LIKE="rhel fedora"
[2025-11-25 21:33:59] VERSION_ID="7"
[2025-11-25 21:33:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:33:59] ANSI_COLOR="0;31"
[2025-11-25 21:33:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:33:59] HOME_URL="https://www.centos.org/"
[2025-11-25 21:33:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:33:59] 
[2025-11-25 21:33:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:33:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:33:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:33:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:33:59] 
[2025-11-25 21:33:59] 2025-11-26 02:32:51,173 | INFO     | ***************************************
[2025-11-25 21:33:59] 2025-11-26 02:32:51,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-25 21:33:59] 2025-11-26 02:32:51,778 | INFO     | sufficient remaining disk space (122799783936 B)
[2025-11-25 21:33:59] 2025-11-26 02:32:51,778 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:33:59] 2025-11-26 02:32:51,779 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:33:59] 2025-11-26 02:32:51,779 | INFO     | update_server=False
[2025-11-25 21:33:59] 2025-11-26 02:32:51,779 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:33:59] 2025-11-26 02:32:51,779 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:33:59] 2025-11-26 02:32:51,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:33:59] 2025-11-26 02:32:52,057 | INFO     | all data control threads have been joined
[2025-11-25 21:33:59] 2025-11-26 02:32:52,132 | INFO     | all payload control threads have been joined
[2025-11-25 21:33:59] 2025-11-26 02:32:52,324 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:33:59] 2025-11-26 02:32:52,324 | INFO     | aborting loop
[2025-11-25 21:33:59] 2025-11-26 02:32:52,553 | INFO     | all job control threads have been joined
[2025-11-25 21:33:59] 2025-11-26 02:32:52,785 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:52,786 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:52,807 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,064 | INFO     | [data] control thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,138 | INFO     | [payload] control thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,210 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,330 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,514 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,514 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,559 | INFO     | [job] control thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,786 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:53,862 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:54,130 | INFO     | [job] validate thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:54,259 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:54,288 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:32:54,804 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:33:59] 2025-11-26 02:32:58,831 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:33:59] 2025-11-26 02:33:27,649 | INFO     | PID=1628671 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 21:33:59] 2025-11-26 02:33:27,649 | INFO     | .. there are 26 such processes running
[2025-11-25 21:33:59] 2025-11-26 02:33:27,649 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:33:59] 2025-11-26 02:33:27,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:33:59] 2025-11-26 02:33:27,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:33:59] 2025-11-26 02:33:50,651 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:33:59] 2025-11-26 02:33:52,578 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139797346969408)>', '<ExcThread(monitor, started 139796848551680)>']
[2025-11-25 21:33:59] 2025-11-26 02:33:52,939 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:33:59] 2025-11-26 02:33:52,939 | INFO     | [monitor] control thread has ended
[2025-11-25 21:33:59] 2025-11-26 02:33:57,607 | INFO     | all workflow threads have been joined
[2025-11-25 21:33:59] 2025-11-26 02:33:57,607 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:33:59] 2025-11-26 02:33:57,607 | INFO     | traces error code: 0
[2025-11-25 21:33:59] 2025-11-26 02:33:57,607 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:33:59] 2025-11-26 02:33:58,683 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:33:59] 2025-11-26 02:33:58,709 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:33:59] 2025-11-26 02:33:58,736 [wrapper] pilotpid: 1628671
[2025-11-25 21:33:59] 2025-11-26 02:33:58,744 [wrapper] Pilot exit status: 0
[2025-11-25 21:33:59] 2025-11-26 02:33:58,802 [wrapper] pandaids: 6895356030
[2025-11-25 21:33:59] 2025-11-26 02:33:59,037 [wrapper] cleanup supervisor_pilot 1397359 1628672
[2025-11-25 21:33:59] 2025-11-26 02:33:59,064 [wrapper] Test setup, not cleaning
[2025-11-25 21:33:59] 2025-11-26 02:33:59,075 [wrapper] apfmon messages muted
[2025-11-25 21:33:59] 2025-11-26 02:33:59,083 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:33:59] 2025-11-26 02:33:59,090 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:33:59]  *** Error codes and diagnostics ***
[2025-11-25 21:33:59]     "exeErrorCode": 0,
[2025-11-25 21:33:59]     "exeErrorDiag": "",
[2025-11-25 21:33:59]     "pilotErrorCode": 0,
[2025-11-25 21:33:59]     "pilotErrorDiag": "",
[2025-11-25 21:33:59]  *** Listing of results directory ***
[2025-11-25 21:33:59] total 1322820
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 04:19 pilot3.tar.gz
[2025-11-25 21:33:59] -rwx------. 1 boincer umatlas     36292 Nov 23 05:12 runpilot2-wrapper.sh
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 05:12 queuedata.json
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:33:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-25 21:33:59] -rw-r--r--. 2 boincer umatlas 409993095 Nov 25 00:00 EVNT.47483658._000686.pool.root.1
[2025-11-25 21:33:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-25 21:33:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-25 21:33:59] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:00 input.tar.gz
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:00 pandaJob.out
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas        57 Nov 25 00:00 setup.sh.local
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas    991801 Nov 25 00:00 agis_schedconf.cvmfs.json
[2025-11-25 21:33:59] drwx------. 5 boincer umatlas      4096 Nov 25 00:00 pilot3
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas       533 Nov 25 21:14 boinc_task_state.xml
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas 915315905 Nov 25 21:27 HITS.47556137._006813.pool.root.1
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas      6948 Nov 25 21:31 init_data.xml
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas      1083 Nov 25 21:32 memory_monitor_summary.json
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas   1516240 Nov 25 21:32 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas   2788912 Nov 25 21:32 log.47556137._006813.job.log.tgz.1
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas        95 Nov 25 21:32 pilot_heartbeat.json
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas      8631 Nov 25 21:32 heartbeat.json
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 21:33 boinc_mmap_file
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas      4825 Nov 25 21:33 pilotlog.txt
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas        29 Nov 25 21:33 wrapper_checkpoint.txt
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas   9881157 Nov 25 21:33 log.47556137._006813.job.log.1
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas       353 Nov 25 21:33 output.list
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas       620 Nov 25 21:33 runtime_log
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas  12687360 Nov 25 21:33 result.tar.gz
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas      9340 Nov 25 21:33 runtime_log.err
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas       664 Nov 25 21:33 lPSKDmqFMh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzmKKDm9oNJdm.diag
[2025-11-25 21:33:59] -rw-r--r--. 1 boincer umatlas     21789 Nov 25 21:33 stderr.txt
[2025-11-25 21:33:59] HITS file was successfully produced:
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas 915315905 Nov 25 21:27 shared/HITS.pool.root.1
[2025-11-25 21:33:59]  *** Contents of shared directory: ***
[2025-11-25 21:33:59] total 1307244
[2025-11-25 21:33:59] -rw-r--r--. 2 boincer umatlas 409993095 Nov 25 00:00 ATLAS.root_0
[2025-11-25 21:33:59] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-25 21:33:59] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:00 input.tar.gz
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas 915315905 Nov 25 21:27 HITS.pool.root.1
[2025-11-25 21:33:59] -rw-------. 1 boincer umatlas  12687360 Nov 25 21:33 result.tar.gz
21:34:01 (1624997): run_atlas exited; CPU time 213477.738836
21:34:01 (1624997): called boinc_finish(0)

</stderr_txt>
]]>

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