Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:58:21 (3527727): wrapper (7.7.26015): starting
23:58:21 (3527727): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:58:21] Arguments: --nthreads 8
[2025-11-24 23:58:21] Threads: 8
[2025-11-24 23:58:21] Checking for CVMFS
[2025-11-24 23:58:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:58:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:58:22] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:58:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:58:23] 2.13.2.0 6307 31005 297788 153270 1 371 28464200 40960001 11828 16776704 0 45606629 99.752 26511073 39594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:58:23] CVMFS is ok
[2025-11-24 23:58:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:58:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:58:23] Further information can be found at the LHC@home message board.
[2025-11-24 23:58:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:58:23] Checking for apptainer binary...
[2025-11-24 23:58:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:58:23] Running /usr/bin/apptainer --version
[2025-11-24 23:58:23] apptainer version 1.4.4-1.el9
[2025-11-24 23:58:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:58:23] c-206-39.aglt2.org
[2025-11-24 23:58:23] apptainer works
[2025-11-24 23:58:23] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:58:23] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:58:23] Starting ATLAS job with PandaID=6895384346
[2025-11-24 23:58:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:20:04 (3527727): BOINC client no longer exists - exiting
17:20:04 (3527727): timer handler: client dead, exiting
17:28:23 (1542127): wrapper (7.7.26015): starting
17:28:23 (1542127): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 17:28:23] Arguments: --nthreads 9
[2025-11-25 17:28:23] Threads: 9
[2025-11-25 17:28:23] This job has been restarted, cleaning up previous attempt
[2025-11-25 17:28:23] Checking for CVMFS
[2025-11-25 17:28:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 17:28:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 17:28:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 17:28:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 17:28:24] 2.13.2.0 6307 32055 287968 153300 1 161 38347246 40960000 8863 16776704 0 47881841 99.743 28177565 39001 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 17:28:24] CVMFS is ok
[2025-11-25 17:28:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 17:28:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 17:28:24] Further information can be found at the LHC@home message board.
[2025-11-25 17:28:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 17:28:24] Checking for apptainer binary...
[2025-11-25 17:28:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 17:28:24] Running /usr/bin/apptainer --version
[2025-11-25 17:28:24] apptainer version 1.4.4-1.el9
[2025-11-25 17:28:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 17:28:24] c-206-39.aglt2.org
[2025-11-25 17:28:24] apptainer works
[2025-11-25 17:28:24] Set ATHENA_PROC_NUMBER=9
[2025-11-25 17:28:24] Set ATHENA_CORE_NUMBER=9
[2025-11-25 17:28:24] Starting ATLAS job with PandaID=6895384346
[2025-11-25 17:28:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 05:17:34]  *** The last 200 lines of the pilot log: ***
[2025-11-27 05:17:34] 2025-11-27 10:16:55,870 | INFO     | time since job start (128900s) is within the limit (172800.0s)
[2025-11-27 05:17:34] 2025-11-27 10:16:56,444 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 05:17:34] 2025-11-27 10:16:56,449 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3242.127718750001
[2025-11-27 05:17:34] 2025-11-27 10:16:56,460 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895384346/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 05:17:34] 2025-11-27 10:16:56,460 | INFO     | extracted standard info from prmon json
[2025-11-27 05:17:34] 2025-11-27 10:16:56,461 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 05:17:34] 2025-11-27 10:16:56,461 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 05:17:34] 2025-11-27 10:16:56,488 | INFO     | fitting pss+swap vs Time
[2025-11-27 05:17:34] 2025-11-27 10:16:56,490 | INFO     | sum of square deviations: 2925233941224.413
[2025-11-27 05:17:34] 2025-11-27 10:16:56,573 | INFO     | sum of deviations: 9123669375428.988
[2025-11-27 05:17:34] 2025-11-27 10:16:56,573 | INFO     | mean x: 1764174171.8121154
[2025-11-27 05:17:34] 2025-11-27 10:16:56,573 | INFO     | mean y: 3139404.1107430193
[2025-11-27 05:17:34] 2025-11-27 10:16:56,573 | INFO     | intersect: -5499238247.62258
[2025-11-27 05:17:34] 2025-11-27 10:16:56,575 | INFO     | chi2: 6.582936085106903
[2025-11-27 05:17:34] 2025-11-27 10:16:56,577 | INFO     | sum of square deviations: 2904520033195.104
[2025-11-27 05:17:34] 2025-11-27 10:16:56,659 | INFO     | sum of deviations: 9898780879319.738
[2025-11-27 05:17:34] 2025-11-27 10:16:56,659 | INFO     | mean x: 1764174019.3259013
[2025-11-27 05:17:34] 2025-11-27 10:16:56,659 | INFO     | mean y: 3145109.086337761
[2025-11-27 05:17:34] 2025-11-27 10:16:56,660 | INFO     | intersect: -6009267217.464427
[2025-11-27 05:17:34] 2025-11-27 10:16:56,661 | INFO     | chi2: 3.357688435781611
[2025-11-27 05:17:34] 2025-11-27 10:16:56,661 | INFO     | current chi2=3.357688435781611 (change=48.99405990925577 %)
[2025-11-27 05:17:34] 2025-11-27 10:16:56,663 | INFO     | sum of square deviations: 2883903402413.056
[2025-11-27 05:17:34] 2025-11-27 10:16:56,749 | INFO     | sum of deviations: 9997169045821.943
[2025-11-27 05:17:34] 2025-11-27 10:16:56,749 | INFO     | mean x: 1764173866.8368998
[2025-11-27 05:17:34] 2025-11-27 10:16:56,749 | INFO     | mean y: 3145835.5187826916
[2025-11-27 05:17:34] 2025-11-27 10:16:56,749 | INFO     | intersect: -6112434997.817249
[2025-11-27 05:17:34] 2025-11-27 10:16:56,751 | INFO     | chi2: 3.155008525295925
[2025-11-27 05:17:34] 2025-11-27 10:16:56,751 | INFO     | current chi2=3.155008525295925 (change=6.036292954575622 %)
[2025-11-27 05:17:34] 2025-11-27 10:16:56,751 | INFO     | right removable region: 2102
[2025-11-27 05:17:34] 2025-11-27 10:16:56,753 | INFO     | sum of square deviations: 2904512670444.7554
[2025-11-27 05:17:34] 2025-11-27 10:16:56,885 | INFO     | sum of deviations: 8456181694528.189
[2025-11-27 05:17:34] 2025-11-27 10:16:56,885 | INFO     | mean x: 1764174324.325427
[2025-11-27 05:17:34] 2025-11-27 10:16:56,885 | INFO     | mean y: 3144314.412239089
[2025-11-27 05:17:34] 2025-11-27 10:16:56,885 | INFO     | intersect: -5133062795.000356
[2025-11-27 05:17:34] 2025-11-27 10:16:56,887 | INFO     | chi2: 4.176533052894977
[2025-11-27 05:17:34] 2025-11-27 10:16:56,887 | INFO     | current chi2=4.176533052894977 (change=36.555163244803815 %)
[2025-11-27 05:17:34] 2025-11-27 10:16:56,889 | INFO     | sum of square deviations: 2883890090759.7314
[2025-11-27 05:17:34] 2025-11-27 10:16:56,970 | INFO     | sum of deviations: 8218104741495.845
[2025-11-27 05:17:34] 2025-11-27 10:16:56,970 | INFO     | mean x: 1764174476.836424
[2025-11-27 05:17:34] 2025-11-27 10:16:56,970 | INFO     | mean y: 3146074.976224441
[2025-11-27 05:17:34] 2025-11-27 10:16:56,970 | INFO     | intersect: -5024150450.424981
[2025-11-27 05:17:34] 2025-11-27 10:16:56,972 | INFO     | chi2: 4.006184591509693
[2025-11-27 05:17:34] 2025-11-27 10:16:56,972 | INFO     | current chi2=4.006184591509693 (change=4.078704974385556 %)
[2025-11-27 05:17:34] 2025-11-27 10:16:56,972 | INFO     | left removable region: 20
[2025-11-27 05:17:34] 2025-11-27 10:16:56,974 | INFO     | sum of square deviations: 2798355339050.1367
[2025-11-27 05:17:34] 2025-11-27 10:16:57,054 | INFO     | sum of deviations: 8759573524241.119
[2025-11-27 05:17:34] 2025-11-27 10:16:57,054 | INFO     | mean x: 1764174446.3832853
[2025-11-27 05:17:34] 2025-11-27 10:16:57,054 | INFO     | mean y: 3154929.3707973105
[2025-11-27 05:17:34] 2025-11-27 10:16:57,054 | INFO     | intersect: -5519165827.051513
[2025-11-27 05:17:34] 2025-11-27 10:16:57,056 | INFO     | chi2: 0.45102328135455627
[2025-11-27 05:17:34] 2025-11-27 10:16:57,056 | INFO     | current memory leak: 3.13 B/s (using 2082 data points, chi2=0.45)
[2025-11-27 05:17:34] 2025-11-27 10:16:57,057 | INFO     | could have reported an average CPU frequency of 3228 MHz (73 samples)
[2025-11-27 05:17:34] 2025-11-27 10:16:57,057 | INFO     | ..............................
[2025-11-27 05:17:34] 2025-11-27 10:16:57,057 | INFO     | . Timing measurements:
[2025-11-27 05:17:34] 2025-11-27 10:16:57,057 | INFO     | . get job = 0 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | . initial setup = 2 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | . payload setup = 9 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | . stage-in = 0 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | . payload execution = 128860 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | . stage-out = 4 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | . log creation = 1 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,058 | INFO     | ..............................
[2025-11-27 05:17:34] 2025-11-27 10:16:57,135 | INFO     | 
[2025-11-27 05:17:34] 2025-11-27 10:16:57,135 | INFO     | job summary report
[2025-11-27 05:17:34] 2025-11-27 10:16:57,135 | INFO     | --------------------------------------------------
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | PanDA job id: 6895384346
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | task id: 47556149
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | errors: (none)
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | pilot state: finished 
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | transexitcode: 0
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | exeerrorcode: 0
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | exeerrordiag: 
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | exitcode: 0
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | exitmsg: OK
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | cpuconsumptiontime: 202507 s
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | nevents: 1000
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | neventsw: 0
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | pid: 1572676
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | pgrp: 1572676
[2025-11-27 05:17:34] 2025-11-27 10:16:57,136 | INFO     | corecount: 9
[2025-11-27 05:17:34] 2025-11-27 10:16:57,137 | INFO     | event service: False
[2025-11-27 05:17:34] 2025-11-27 10:16:57,137 | INFO     | sizes: {0: 2284264, 4: 2284526, 11: 2284554, 128874: 2370353, 128879: 2379403, 128886: 2379593}
[2025-11-27 05:17:34] 2025-11-27 10:16:57,137 | INFO     | --------------------------------------------------
[2025-11-27 05:17:34] 2025-11-27 10:16:57,137 | INFO     | 
[2025-11-27 05:17:34] 2025-11-27 10:16:57,137 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 05:17:34] 2025-11-27 10:16:57,159 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,159 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,160 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,161 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 05:17:34] 2025-11-27 10:16:57,162 | INFO     | job 6895384346 has completed (purged errors)
[2025-11-27 05:17:34] 2025-11-27 10:16:57,162 | INFO     | overall cleanup function is called
[2025-11-27 05:17:34] 2025-11-27 10:16:58,181 | INFO     | --- collectZombieJob: --- 10, [1572676]
[2025-11-27 05:17:34] 2025-11-27 10:16:58,181 | INFO     | zombie collector waiting for pid 1572676
[2025-11-27 05:17:34] 2025-11-27 10:16:58,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 05:17:34] 2025-11-27 10:16:58,181 | INFO     | collected zombie processes
[2025-11-27 05:17:34] 2025-11-27 10:16:58,181 | INFO     | will attempt to kill all subprocesses of pid=1572676
[2025-11-27 05:17:34] 2025-11-27 10:16:58,490 | INFO     | process IDs to be killed: [1572676] (in reverse order)
[2025-11-27 05:17:34] 2025-11-27 10:16:58,621 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 05:17:34] 2025-11-27 10:16:58,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 05:17:34] 2025-11-27 10:16:58,634 | INFO     | did not find any defunct processes belonging to 1572676
[2025-11-27 05:17:34] 2025-11-27 10:16:58,644 | INFO     | did not find any defunct processes belonging to 1572676
[2025-11-27 05:17:34] 2025-11-27 10:16:58,645 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 05:17:34] 2025-11-27 10:16:58,645 | INFO     | ready for new job
[2025-11-27 05:17:34] 2025-11-27 10:16:58,645 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 05:17:34] 2025-11-27 10:16:58,655 | INFO     | ***************************************
[2025-11-27 05:17:34] 2025-11-27 10:16:58,655 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 05:17:34] 2025-11-27 10:16:58,655 | INFO     | ***************************************
[2025-11-27 05:17:34] 2025-11-27 10:16:58,655 | INFO     | 
[2025-11-27 05:17:34] 2025-11-27 10:16:58,658 | INFO     | architecture information:
[2025-11-27 05:17:34] 2025-11-27 10:16:58,659 | INFO     | executing command: cat /etc/os-release
[2025-11-27 05:17:34] 2025-11-27 10:16:58,676 | INFO     | cat /etc/os-release:
[2025-11-27 05:17:34] NAME="CentOS Linux"
[2025-11-27 05:17:34] VERSION="7 (Core)"
[2025-11-27 05:17:34] ID="centos"
[2025-11-27 05:17:34] ID_LIKE="rhel fedora"
[2025-11-27 05:17:34] VERSION_ID="7"
[2025-11-27 05:17:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 05:17:34] ANSI_COLOR="0;31"
[2025-11-27 05:17:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 05:17:34] HOME_URL="https://www.centos.org/"
[2025-11-27 05:17:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 05:17:34] 
[2025-11-27 05:17:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 05:17:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 05:17:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 05:17:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 05:17:34] 
[2025-11-27 05:17:34] 2025-11-27 10:16:58,677 | INFO     | ***************************************
[2025-11-27 05:17:34] 2025-11-27 10:16:59,180 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 05:17:34] 2025-11-27 10:16:59,261 | INFO     | sufficient remaining disk space (76056363008 B)
[2025-11-27 05:17:34] 2025-11-27 10:16:59,262 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 05:17:34] 2025-11-27 10:16:59,262 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 05:17:34] 2025-11-27 10:16:59,262 | INFO     | update_server=False
[2025-11-27 05:17:34] 2025-11-27 10:16:59,262 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 05:17:34] 2025-11-27 10:16:59,612 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 05:17:34] 2025-11-27 10:16:59,612 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 05:17:34] 2025-11-27 10:16:59,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:17:34] 2025-11-27 10:16:59,612 | INFO     | will abort loop
[2025-11-27 05:17:34] 2025-11-27 10:17:00,244 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 05:17:34] 2025-11-27 10:17:00,268 | INFO     | [job] retrieve thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:00,323 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 05:17:34] 2025-11-27 10:17:00,350 | INFO     | all data control threads have been joined
[2025-11-27 05:17:34] 2025-11-27 10:17:00,584 | INFO     | all payload control threads have been joined
[2025-11-27 05:17:34] 2025-11-27 10:17:00,618 | INFO     | [job] job monitor thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:00,784 | INFO     | [payload] validate_post thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:00,869 | INFO     | all job control threads have been joined
[2025-11-27 05:17:34] 2025-11-27 10:17:00,968 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:00,970 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,060 | INFO     | [data] copytool_in thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,093 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,127 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,244 | INFO     | [job] validate thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,261 | INFO     | [payload] failed_post thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,356 | INFO     | [data] control thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,590 | INFO     | [payload] control thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:01,874 | INFO     | [job] control thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:02,152 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 05:17:34] 2025-11-27 10:17:02,263 | INFO     | [data] copytool_out thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:03,157 | INFO     | [job] queue monitor thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:04,334 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 05:17:34] 2025-11-27 10:17:27,248 | INFO     | [monitor] cgroup control has ended
[2025-11-27 05:17:34] 2025-11-27 10:17:28,992 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140219971487552)>', '<ExcThread(monitor, started 140219173025536)>']
[2025-11-27 05:17:34] 2025-11-27 10:17:29,368 | INFO     | PID=1553302 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 05:17:34] 2025-11-27 10:17:29,368 | INFO     | .. there are 16 such processes running
[2025-11-27 05:17:34] 2025-11-27 10:17:29,369 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 05:17:34] 2025-11-27 10:17:29,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 05:17:34] 2025-11-27 10:17:29,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 05:17:34] 2025-11-27 10:17:29,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 05:17:34] 2025-11-27 10:17:29,369 | INFO     | [monitor] control thread has ended
[2025-11-27 05:17:34] 2025-11-27 10:17:34,018 | INFO     | all workflow threads have been joined
[2025-11-27 05:17:34] 2025-11-27 10:17:34,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 05:17:34] 2025-11-27 10:17:34,018 | INFO     | traces error code: 0
[2025-11-27 05:17:34] 2025-11-27 10:17:34,019 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 05:17:34] 2025-11-27 10:17:34,183 [wrapper] ==== pilot stdout END ====
[2025-11-27 05:17:34] 2025-11-27 10:17:34,187 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 05:17:34] 2025-11-27 10:17:34,192 [wrapper] pilotpid: 1553302
[2025-11-27 05:17:34] 2025-11-27 10:17:34,200 [wrapper] Pilot exit status: 0
[2025-11-27 05:17:34] 2025-11-27 10:17:34,256 [wrapper] pandaids: 6895384346 6895384346
[2025-11-27 05:17:34] 2025-11-27 10:17:34,369 [wrapper] cleanup supervisor_pilot 2673463 1553303
[2025-11-27 05:17:34] 2025-11-27 10:17:34,409 [wrapper] Test setup, not cleaning
[2025-11-27 05:17:34] 2025-11-27 10:17:34,420 [wrapper] apfmon messages muted
[2025-11-27 05:17:34] 2025-11-27 10:17:34,422 [wrapper] ==== wrapper stdout END ====
[2025-11-27 05:17:34] 2025-11-27 10:17:34,424 [wrapper] ==== wrapper stderr END ====
[2025-11-27 05:17:34]  *** Error codes and diagnostics ***
[2025-11-27 05:17:34]     "exeErrorCode": 0,
[2025-11-27 05:17:34]     "exeErrorDiag": "",
[2025-11-27 05:17:34]     "pilotErrorCode": 0,
[2025-11-27 05:17:34]     "pilotErrorDiag": "",
[2025-11-27 05:17:34]  *** Listing of results directory ***
[2025-11-27 05:17:34] total 1737004
[2025-11-27 05:17:34] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-27 05:17:34] -rwx------. 1 boincer umatlas     36292 Nov 23 23:57 runpilot2-wrapper.sh
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 23:57 queuedata.json
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 05:17:34] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:58 run_atlas
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:58 job.xml
[2025-11-27 05:17:34] -rw-r--r--. 3 boincer umatlas 408800121 Nov 24 23:58 EVNT.47483658._001225.pool.root.1
[2025-11-27 05:17:34] -rw-r--r--. 3 boincer umatlas 408800121 Nov 24 23:58 ATLAS.root_0
[2025-11-27 05:17:34] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:58 start_atlas.sh
[2025-11-27 05:17:34] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:58 shared
[2025-11-27 05:17:34] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 23:58 input.tar.gz
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:58 boinc_lockfile
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 17:28 pandaJob.out
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas        57 Nov 25 17:28 setup.sh.local
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas    991877 Nov 25 17:28 agis_schedconf.cvmfs.json
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas       534 Nov 27 05:08 boinc_task_state.xml
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas      6904 Nov 27 05:11 init_data.xml
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas 918310482 Nov 27 05:16 HITS.47556149._002116.pool.root.1
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas      1062 Nov 27 05:16 memory_monitor_summary.json
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas   1516240 Nov 27 05:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas   3046273 Nov 27 05:16 log.47556149._002116.job.log.tgz.1
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas        96 Nov 27 05:16 pilot_heartbeat.json
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas      8618 Nov 27 05:16 heartbeat.json
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas        30 Nov 27 05:17 wrapper_checkpoint.txt
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas      5010 Nov 27 05:17 pilotlog.txt
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas  16381374 Nov 27 05:17 log.47556149._002116.job.log.1
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas       353 Nov 27 05:17 output.list
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas       620 Nov 27 05:17 runtime_log
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas  19445760 Nov 27 05:17 result.tar.gz
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas      9429 Nov 27 05:17 runtime_log.err
[2025-11-27 05:17:34] -rw-------. 1 boincer umatlas       792 Nov 27 05:17 LNcLDmxodh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4uIKDmsm22Cn.diag
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas     23559 Nov 27 05:17 stderr.txt
[2025-11-27 05:17:34] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 05:17 boinc_mmap_file
[2025-11-27 05:17:34] HITS file was successfully produced:
[2025-11-27 05:17:35] -rw-------. 1 boincer umatlas 918310482 Nov 27 05:16 shared/HITS.pool.root.1
[2025-11-27 05:17:35]  *** Contents of shared directory: ***
[2025-11-27 05:17:35] total 1315604
[2025-11-27 05:17:35] -rw-r--r--. 3 boincer umatlas 408800121 Nov 24 23:58 ATLAS.root_0
[2025-11-27 05:17:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:58 start_atlas.sh
[2025-11-27 05:17:35] -rw-r--r--. 2 boincer umatlas    590103 Nov 24 23:58 input.tar.gz
[2025-11-27 05:17:35] -rw-------. 1 boincer umatlas 918310482 Nov 27 05:16 HITS.pool.root.1
[2025-11-27 05:17:35] -rw-------. 1 boincer umatlas  19445760 Nov 27 05:17 result.tar.gz
05:17:36 (1542127): run_atlas exited; CPU time 202642.692029
05:17:36 (1542127): called boinc_finish(0)

</stderr_txt>
]]>

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