Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:08:52 (726): wrapper (7.7.26015): starting
23:08:52 (726): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 23:08:52] Arguments: --nthreads 12
[2025-11-24 23:08:52] Threads: 12
[2025-11-24 23:08:52] Checking for CVMFS
[2025-11-24 23:08:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:08:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:08:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:08:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:08:52] 2.11.2.0 3081 285695 98316 153268 0 82 16492294 20275200 1 130560 1 128767526 99.965 16788495 14310 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:08:52] CVMFS is ok
[2025-11-24 23:08:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:08:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:08:52] Further information can be found at the LHC@home message board.
[2025-11-24 23:08:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:08:52] Checking for apptainer binary...
[2025-11-24 23:08:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:08:52] Running /usr/bin/apptainer --version
[2025-11-24 23:08:52] apptainer version 1.3.2-1.el7
[2025-11-24 23:08:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:08:53] c-205-29.aglt2.org
[2025-11-24 23:08:53] apptainer works
[2025-11-24 23:08:53] Set ATHENA_PROC_NUMBER=12
[2025-11-24 23:08:53] Set ATHENA_CORE_NUMBER=12
[2025-11-24 23:08:53] Starting ATLAS job with PandaID=6895383688
[2025-11-24 23:08:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 06:19:56]  *** The last 200 lines of the pilot log: ***
[2025-11-25 06:19:56] 2025-11-25 11:19:23,793 | INFO     | extracted standard info from prmon json
[2025-11-25 06:19:56] 2025-11-25 11:19:23,794 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 06:19:56] 2025-11-25 11:19:23,794 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 06:19:56] 2025-11-25 11:19:23,801 | INFO     | fitting pss+swap vs Time
[2025-11-25 06:19:56] 2025-11-25 11:19:23,801 | INFO     | sum of square deviations: 23469157406.345215
[2025-11-25 06:19:56] 2025-11-25 11:19:23,805 | INFO     | sum of deviations: 318581208213.82513
[2025-11-25 06:19:56] 2025-11-25 11:19:23,805 | INFO     | mean x: 1764056648.2647755
[2025-11-25 06:19:56] 2025-11-25 11:19:23,806 | INFO     | mean y: 3396531.9479905437
[2025-11-25 06:19:56] 2025-11-25 11:19:23,806 | INFO     | intersect: -23942725121.736927
[2025-11-25 06:19:56] 2025-11-25 11:19:23,806 | INFO     | chi2: 6.89483094146499
[2025-11-25 06:19:56] 2025-11-25 11:19:23,807 | INFO     | sum of square deviations: 22646748238.49037
[2025-11-25 06:19:56] 2025-11-25 11:19:23,810 | INFO     | sum of deviations: 487299528247.1177
[2025-11-25 06:19:56] 2025-11-25 11:19:23,811 | INFO     | mean x: 1764056495.7679427
[2025-11-25 06:19:56] 2025-11-25 11:19:23,811 | INFO     | mean y: 3427800.2177033494
[2025-11-25 06:19:56] 2025-11-25 11:19:23,811 | INFO     | intersect: -37954511641.52373
[2025-11-25 06:19:56] 2025-11-25 11:19:23,811 | INFO     | chi2: 3.552815739649221
[2025-11-25 06:19:56] 2025-11-25 11:19:23,811 | INFO     | current chi2=3.552815739649221 (change=48.47131467310016 %)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,812 | INFO     | sum of square deviations: 21843781295.62714
[2025-11-25 06:19:56] 2025-11-25 11:19:23,815 | INFO     | sum of deviations: 577277081856.339
[2025-11-25 06:19:56] 2025-11-25 11:19:23,816 | INFO     | mean x: 1764056343.2711864
[2025-11-25 06:19:56] 2025-11-25 11:19:23,816 | INFO     | mean y: 3444862.818401937
[2025-11-25 06:19:56] 2025-11-25 11:19:23,816 | INFO     | intersect: -46616198700.341415
[2025-11-25 06:19:56] 2025-11-25 11:19:23,816 | INFO     | chi2: 2.4428594603402862
[2025-11-25 06:19:56] 2025-11-25 11:19:23,816 | INFO     | current chi2=2.4428594603402862 (change=31.24159429158923 %)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,817 | INFO     | sum of square deviations: 21060024015.25486
[2025-11-25 06:19:56] 2025-11-25 11:19:23,821 | INFO     | sum of deviations: 587410148140.157
[2025-11-25 06:19:56] 2025-11-25 11:19:23,821 | INFO     | mean x: 1764056190.77451
[2025-11-25 06:19:56] 2025-11-25 11:19:23,821 | INFO     | mean y: 3446803.5343137253
[2025-11-25 06:19:56] 2025-11-25 11:19:23,821 | INFO     | intersect: -49199940030.204575
[2025-11-25 06:19:56] 2025-11-25 11:19:23,821 | INFO     | chi2: 2.310205038104666
[2025-11-25 06:19:56] 2025-11-25 11:19:23,821 | INFO     | current chi2=2.310205038104666 (change=5.4302928346578625 %)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,822 | INFO     | right removable region: 407
[2025-11-25 06:19:56] 2025-11-25 11:19:23,822 | INFO     | sum of square deviations: 22646705477.023853
[2025-11-25 06:19:56] 2025-11-25 11:19:23,826 | INFO     | sum of deviations: 190521913037.99527
[2025-11-25 06:19:56] 2025-11-25 11:19:23,826 | INFO     | mean x: 1764056800.7655501
[2025-11-25 06:19:56] 2025-11-25 11:19:23,826 | INFO     | mean y: 3420194.846889952
[2025-11-25 06:19:56] 2025-11-25 11:19:23,826 | INFO     | intersect: -14837214206.943645
[2025-11-25 06:19:56] 2025-11-25 11:19:23,827 | INFO     | chi2: 4.812764552165743
[2025-11-25 06:19:56] 2025-11-25 11:19:23,827 | INFO     | current chi2=4.812764552165743 (change=30.197497327713403 %)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,827 | INFO     | sum of square deviations: 21843721514.232494
[2025-11-25 06:19:56] 2025-11-25 11:19:23,831 | INFO     | sum of deviations: 151411598205.5519
[2025-11-25 06:19:56] 2025-11-25 11:19:23,831 | INFO     | mean x: 1764056953.2639225
[2025-11-25 06:19:56] 2025-11-25 11:19:23,831 | INFO     | mean y: 3427614.2518159808
[2025-11-25 06:19:56] 2025-11-25 11:19:23,831 | INFO     | intersect: -12224281956.449142
[2025-11-25 06:19:56] 2025-11-25 11:19:23,832 | INFO     | chi2: 4.715894503981067
[2025-11-25 06:19:56] 2025-11-25 11:19:23,832 | INFO     | current chi2=4.715894503981067 (change=2.01277347218418 %)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,832 | INFO     | left removable region: 20
[2025-11-25 06:19:56] 2025-11-25 11:19:23,832 | INFO     | sum of square deviations: 17972590750.96636
[2025-11-25 06:19:56] 2025-11-25 11:19:23,836 | INFO     | sum of deviations: 363360935949.02325
[2025-11-25 06:19:56] 2025-11-25 11:19:23,836 | INFO     | mean x: 1764056770.2739017
[2025-11-25 06:19:56] 2025-11-25 11:19:23,836 | INFO     | mean y: 3491375.3488372094
[2025-11-25 06:19:56] 2025-11-25 11:19:23,836 | INFO     | intersect: -35661334469.49888
[2025-11-25 06:19:56] 2025-11-25 11:19:23,837 | INFO     | chi2: 0.05848614647331775
[2025-11-25 06:19:56] 2025-11-25 11:19:23,837 | INFO     | current memory leak: 20.22 B/s (using 387 data points, chi2=0.06)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,837 | INFO     | could have reported an average CPU frequency of 2346 MHz (18 samples)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,837 | INFO     | ..............................
[2025-11-25 06:19:56] 2025-11-25 11:19:23,837 | INFO     | . Timing measurements:
[2025-11-25 06:19:56] 2025-11-25 11:19:23,837 | INFO     | . get job = 0 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | . initial setup = 2 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | . payload setup = 7 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | . stage-in = 0 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | . payload execution = 25777 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | . stage-out = 3 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | . log creation = 0 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,838 | INFO     | ..............................
[2025-11-25 06:19:56] 2025-11-25 11:19:23,919 | INFO     | 
[2025-11-25 06:19:56] 2025-11-25 11:19:23,919 | INFO     | job summary report
[2025-11-25 06:19:56] 2025-11-25 11:19:23,920 | INFO     | --------------------------------------------------
[2025-11-25 06:19:56] 2025-11-25 11:19:23,920 | INFO     | PanDA job id: 6895383688
[2025-11-25 06:19:56] 2025-11-25 11:19:23,920 | INFO     | task id: 47556137
[2025-11-25 06:19:56] 2025-11-25 11:19:23,920 | INFO     | errors: (none)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,920 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 06:19:56] 2025-11-25 11:19:23,920 | INFO     | pilot state: finished 
[2025-11-25 06:19:56] 2025-11-25 11:19:23,921 | INFO     | transexitcode: 0
[2025-11-25 06:19:56] 2025-11-25 11:19:23,921 | INFO     | exeerrorcode: 0
[2025-11-25 06:19:56] 2025-11-25 11:19:23,921 | INFO     | exeerrordiag: 
[2025-11-25 06:19:56] 2025-11-25 11:19:23,921 | INFO     | exitcode: 0
[2025-11-25 06:19:56] 2025-11-25 11:19:23,921 | INFO     | exitmsg: OK
[2025-11-25 06:19:56] 2025-11-25 11:19:23,921 | INFO     | cpuconsumptiontime: 294108 s
[2025-11-25 06:19:56] 2025-11-25 11:19:23,922 | INFO     | nevents: 1000
[2025-11-25 06:19:56] 2025-11-25 11:19:23,922 | INFO     | neventsw: 0
[2025-11-25 06:19:56] 2025-11-25 11:19:23,922 | INFO     | pid: 11977
[2025-11-25 06:19:56] 2025-11-25 11:19:23,922 | INFO     | pgrp: 11977
[2025-11-25 06:19:56] 2025-11-25 11:19:23,922 | INFO     | corecount: 12
[2025-11-25 06:19:56] 2025-11-25 11:19:23,922 | INFO     | event service: False
[2025-11-25 06:19:56] 2025-11-25 11:19:23,923 | INFO     | sizes: {0: 2284303, 5: 2284565, 11: 2284621, 25787: 2321856, 25788: 2321855, 25791: 2330938, 25794: 2331122, 25799: 2331368}
[2025-11-25 06:19:56] 2025-11-25 11:19:23,923 | INFO     | --------------------------------------------------
[2025-11-25 06:19:56] 2025-11-25 11:19:23,923 | INFO     | 
[2025-11-25 06:19:56] 2025-11-25 11:19:23,923 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 06:19:56] 2025-11-25 11:19:23,944 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,947 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,947 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 06:19:56] 2025-11-25 11:19:23,948 | INFO     | job 6895383688 has completed (purged errors)
[2025-11-25 06:19:56] 2025-11-25 11:19:23,948 | INFO     | overall cleanup function is called
[2025-11-25 06:19:56] 2025-11-25 11:19:24,965 | INFO     | --- collectZombieJob: --- 10, [11977]
[2025-11-25 06:19:56] 2025-11-25 11:19:24,966 | INFO     | zombie collector waiting for pid 11977
[2025-11-25 06:19:56] 2025-11-25 11:19:24,966 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 06:19:56] 2025-11-25 11:19:24,966 | INFO     | collected zombie processes
[2025-11-25 06:19:56] 2025-11-25 11:19:24,966 | INFO     | will attempt to kill all subprocesses of pid=11977
[2025-11-25 06:19:56] 2025-11-25 11:19:25,060 | INFO     | process IDs to be killed: [11977] (in reverse order)
[2025-11-25 06:19:56] 2025-11-25 11:19:25,112 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 06:19:56] 2025-11-25 11:19:25,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 06:19:56] 2025-11-25 11:19:25,116 | INFO     | did not find any defunct processes belonging to 11977
[2025-11-25 06:19:56] 2025-11-25 11:19:25,119 | INFO     | did not find any defunct processes belonging to 11977
[2025-11-25 06:19:56] 2025-11-25 11:19:25,121 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 06:19:56] 2025-11-25 11:19:25,121 | INFO     | ready for new job
[2025-11-25 06:19:56] 2025-11-25 11:19:25,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 06:19:56] 2025-11-25 11:19:25,124 | INFO     | ***************************************
[2025-11-25 06:19:56] 2025-11-25 11:19:25,124 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 06:19:56] 2025-11-25 11:19:25,124 | INFO     | ***************************************
[2025-11-25 06:19:56] 2025-11-25 11:19:25,125 | INFO     | 
[2025-11-25 06:19:56] 2025-11-25 11:19:25,125 | INFO     | architecture information:
[2025-11-25 06:19:56] 2025-11-25 11:19:25,126 | INFO     | executing command: cat /etc/os-release
[2025-11-25 06:19:56] 2025-11-25 11:19:25,141 | INFO     | cat /etc/os-release:
[2025-11-25 06:19:56] NAME="CentOS Linux"
[2025-11-25 06:19:56] VERSION="7 (Core)"
[2025-11-25 06:19:56] ID="centos"
[2025-11-25 06:19:56] ID_LIKE="rhel fedora"
[2025-11-25 06:19:56] VERSION_ID="7"
[2025-11-25 06:19:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 06:19:56] ANSI_COLOR="0;31"
[2025-11-25 06:19:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 06:19:56] HOME_URL="https://www.centos.org/"
[2025-11-25 06:19:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 06:19:56] 
[2025-11-25 06:19:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 06:19:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 06:19:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 06:19:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 06:19:56] 
[2025-11-25 06:19:56] 2025-11-25 11:19:25,141 | INFO     | ***************************************
[2025-11-25 06:19:56] 2025-11-25 11:19:25,644 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 06:19:56] 2025-11-25 11:19:25,660 | INFO     | sufficient remaining disk space (28253880320 B)
[2025-11-25 06:19:56] 2025-11-25 11:19:25,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 06:19:56] 2025-11-25 11:19:25,661 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 06:19:56] 2025-11-25 11:19:25,661 | INFO     | update_server=False
[2025-11-25 06:19:56] 2025-11-25 11:19:25,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 06:19:56] 2025-11-25 11:19:25,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:19:56] 2025-11-25 11:19:25,662 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 06:19:56] 2025-11-25 11:19:25,662 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 06:19:56] 2025-11-25 11:19:25,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 06:19:56] 2025-11-25 11:19:25,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 06:19:56] 2025-11-25 11:19:25,962 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 06:19:56] 2025-11-25 11:19:25,962 | INFO     | aborting loop
[2025-11-25 06:19:56] 2025-11-25 11:19:26,172 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 06:19:56] 2025-11-25 11:19:26,499 | INFO     | all payload control threads have been joined
[2025-11-25 06:19:56] 2025-11-25 11:19:26,502 | INFO     | all data control threads have been joined
[2025-11-25 06:19:56] 2025-11-25 11:19:26,623 | INFO     | all job control threads have been joined
[2025-11-25 06:19:56] 2025-11-25 11:19:26,666 | INFO     | [job] retrieve thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:26,667 | INFO     | [job] queue monitor thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:26,758 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:26,784 | INFO     | [data] copytool_in thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:26,968 | INFO     | [job] job monitor thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,002 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,230 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,476 | INFO     | [payload] failed_post thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,505 | INFO     | [payload] control thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,505 | INFO     | [data] control thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,595 | INFO     | [payload] validate_post thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,629 | INFO     | [job] control thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:27,733 | INFO     | [job] validate thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:28,112 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:28,177 | INFO     | [data] copytool_out thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:29,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 06:19:56] 2025-11-25 11:19:33,128 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 06:19:56] 2025-11-25 11:19:49,968 | INFO     | [monitor] cgroup control has ended
[2025-11-25 06:19:56] 2025-11-25 11:19:51,001 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139977395107648)>', '<ExcThread(monitor, started 139976742270720)>']
[2025-11-25 06:19:56] 2025-11-25 11:19:51,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 06:19:56] 2025-11-25 11:19:51,785 | INFO     | [monitor] control thread has ended
[2025-11-25 06:19:56] 2025-11-25 11:19:56,026 | INFO     | all workflow threads have been joined
[2025-11-25 06:19:56] 2025-11-25 11:19:56,026 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 06:19:56] 2025-11-25 11:19:56,027 | INFO     | traces error code: 0
[2025-11-25 06:19:56] 2025-11-25 11:19:56,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 06:19:56] 2025-11-25 11:19:56,116 [wrapper] ==== pilot stdout END ====
[2025-11-25 06:19:56] 2025-11-25 11:19:56,120 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 06:19:56] 2025-11-25 11:19:56,123 [wrapper] pilotpid: 4654
[2025-11-25 06:19:56] 2025-11-25 11:19:56,127 [wrapper] Pilot exit status: 0
[2025-11-25 06:19:56] 2025-11-25 11:19:56,141 [wrapper] pandaids: 6895383688
[2025-11-25 06:19:56] 2025-11-25 11:19:56,179 [wrapper] cleanup supervisor_pilot 19394 4655
[2025-11-25 06:19:56] 2025-11-25 11:19:56,182 [wrapper] Test setup, not cleaning
[2025-11-25 06:19:56] 2025-11-25 11:19:56,186 [wrapper] apfmon messages muted
[2025-11-25 06:19:56] 2025-11-25 11:19:56,190 [wrapper] ==== wrapper stdout END ====
[2025-11-25 06:19:56] 2025-11-25 11:19:56,195 [wrapper] ==== wrapper stderr END ====
[2025-11-25 06:19:56]  *** Error codes and diagnostics ***
[2025-11-25 06:19:56]     "exeErrorCode": 0,
[2025-11-25 06:19:56]     "exeErrorDiag": "",
[2025-11-25 06:19:56]     "pilotErrorCode": 0,
[2025-11-25 06:19:56]     "pilotErrorDiag": "",
[2025-11-25 06:19:56]  *** Listing of results directory ***
[2025-11-25 06:19:56] total 1308340
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-25 06:19:56] -rwx------ 1 boincer umatlas     36292 Nov 23 23:41 runpilot2-wrapper.sh
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 23:41 queuedata.json
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas       100 Nov 24 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 06:19:56] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 23:08 run_atlas
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas       105 Nov 24 23:08 job.xml
[2025-11-25 06:19:56] -rw-r--r-- 2 boincer umatlas 408371910 Nov 24 23:08 EVNT.47483658._001012.pool.root.1
[2025-11-25 06:19:56] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 23:08 start_atlas.sh
[2025-11-25 06:19:56] drwxrwx--x 2 boincer umatlas      4096 Nov 24 23:08 shared
[2025-11-25 06:19:56] -rw-r--r-- 2 boincer umatlas    590101 Nov 24 23:08 input.tar.gz
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas         0 Nov 24 23:08 boinc_lockfile
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas      2782 Nov 24 23:08 pandaJob.out
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas        57 Nov 24 23:08 setup.sh.local
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas    991801 Nov 24 23:09 agis_schedconf.cvmfs.json
[2025-11-25 06:19:56] drwx------ 5 boincer umatlas      4096 Nov 24 23:09 pilot3
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas       532 Nov 25 06:06 boinc_task_state.xml
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 06:11 init_data.xml
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas 915817866 Nov 25 06:18 HITS.47556137._009981.pool.root.1
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas      1064 Nov 25 06:19 memory_monitor_summary.json
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas   1516240 Nov 25 06:19 agis_ddmendpoints.agis.ALL.json
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas   2184614 Nov 25 06:19 log.47556137._009981.job.log.tgz.1
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas        95 Nov 25 06:19 pilot_heartbeat.json
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas      8665 Nov 25 06:19 heartbeat.json
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 06:19 boinc_mmap_file
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas        29 Nov 25 06:19 wrapper_checkpoint.txt
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas      4552 Nov 25 06:19 pilotlog.txt
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas   3628409 Nov 25 06:19 log.47556137._009981.job.log.1
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas       353 Nov 25 06:19 output.list
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas       620 Nov 25 06:19 runtime_log
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas   5836800 Nov 25 06:19 result.tar.gz
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas      9345 Nov 25 06:19 runtime_log.err
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas       670 Nov 25 06:19 f1XNDmEZdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjQLKDmIeFbjn.diag
[2025-11-25 06:19:56] -rw-r--r-- 1 boincer umatlas     21023 Nov 25 06:19 stderr.txt
[2025-11-25 06:19:56] HITS file was successfully produced:
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas 915817866 Nov 25 06:18 shared/HITS.pool.root.1
[2025-11-25 06:19:56]  *** Contents of shared directory: ***
[2025-11-25 06:19:56] total 1299460
[2025-11-25 06:19:56] -rw-r--r-- 2 boincer umatlas 408371910 Nov 24 23:08 ATLAS.root_0
[2025-11-25 06:19:56] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 23:08 start_atlas.sh
[2025-11-25 06:19:56] -rw-r--r-- 2 boincer umatlas    590101 Nov 24 23:08 input.tar.gz
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas 915817866 Nov 25 06:18 HITS.pool.root.1
[2025-11-25 06:19:56] -rw------- 1 boincer umatlas   5836800 Nov 25 06:19 result.tar.gz
06:19:57 (726): run_atlas exited; CPU time 287547.637504
06:19:57 (726): called boinc_finish(0)

</stderr_txt>
]]>

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