Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:44 (1412057): wrapper (7.7.26015): starting
00:04:44 (1412057): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:04:44] Arguments: --nthreads 9
[2025-11-25 00:04:44] Threads: 9
[2025-11-25 00:04:44] Checking for CVMFS
[2025-11-25 00:04:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:04:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:04:46] 2.13.2.0 7301 34672 247964 153270 1 718 36446925 40960000 33257 16776704 0 219002162 99.679 190420750 35367 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:04:46] CVMFS is ok
[2025-11-25 00:04:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:04:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:04:46] Further information can be found at the LHC@home message board.
[2025-11-25 00:04:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:04:46] Checking for apptainer binary...
[2025-11-25 00:04:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:04:46] Running /usr/bin/apptainer --version
[2025-11-25 00:04:46] apptainer version 1.4.4-1.el9
[2025-11-25 00:04:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:04:46] c-212-17.aglt2.org
[2025-11-25 00:04:46] apptainer works
[2025-11-25 00:04:46] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:04:46] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:04:46] Starting ATLAS job with PandaID=6895882707
[2025-11-25 00:04:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:21:04 (1544298): wrapper (7.7.26015): starting
00:21:04 (1544298): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:21:04] Arguments: --nthreads 9
[2025-11-25 00:21:04] Threads: 9
[2025-11-25 00:21:04] This job has been restarted, cleaning up previous attempt
[2025-11-25 00:21:04] Checking for CVMFS
[2025-11-25 00:21:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:21:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:21:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:21:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:21:05] 2.13.2.0 7301 34688 232288 153272 1 168 36519716 40960000 25881 16776704 0 219256921 99.679 190456788 35371 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:21:05] CVMFS is ok
[2025-11-25 00:21:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:21:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:21:05] Further information can be found at the LHC@home message board.
[2025-11-25 00:21:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:21:05] Checking for apptainer binary...
[2025-11-25 00:21:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:21:05] Running /usr/bin/apptainer --version
[2025-11-25 00:21:05] apptainer version 1.4.4-1.el9
[2025-11-25 00:21:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:21:05] c-212-17.aglt2.org
[2025-11-25 00:21:05] apptainer works
[2025-11-25 00:21:05] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:21:05] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:21:05] Starting ATLAS job with PandaID=6895882707
[2025-11-25 00:21:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 07:47:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 07:47:53] 2025-11-26 12:46:53,628 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 07:47:53] 2025-11-26 12:46:53,710 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3193.5918645833335
[2025-11-26 07:47:53] 2025-11-26 12:46:53,724 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895882707/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 07:47:53] 2025-11-26 12:46:53,724 | INFO     | extracted standard info from prmon json
[2025-11-26 07:47:53] 2025-11-26 12:46:53,725 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 07:47:53] 2025-11-26 12:46:53,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 07:47:53] 2025-11-26 12:46:53,749 | INFO     | fitting pss+swap vs Time
[2025-11-26 07:47:53] 2025-11-26 12:46:53,751 | INFO     | sum of square deviations: 1976048249151.5498
[2025-11-26 07:47:53] 2025-11-26 12:46:53,774 | INFO     | time since job start (113132s) is within the limit (172800.0s)
[2025-11-26 07:47:53] 2025-11-26 12:46:53,833 | INFO     | sum of deviations: 10371032087794.791
[2025-11-26 07:47:53] 2025-11-26 12:46:53,833 | INFO     | mean x: 1764104640.223301
[2025-11-26 07:47:53] 2025-11-26 12:46:53,833 | INFO     | mean y: 3042681.5005393745
[2025-11-26 07:47:53] 2025-11-26 12:46:53,834 | INFO     | intersect: -9255630955.56225
[2025-11-26 07:47:53] 2025-11-26 12:46:53,835 | INFO     | chi2: 5.759653216810875
[2025-11-26 07:47:53] 2025-11-26 12:46:53,837 | INFO     | sum of square deviations: 1960104487444.1643
[2025-11-26 07:47:53] 2025-11-26 12:46:53,898 | INFO     | sum of deviations: 10988858902465.523
[2025-11-26 07:47:53] 2025-11-26 12:46:53,898 | INFO     | mean x: 1764104487.727961
[2025-11-26 07:47:53] 2025-11-26 12:46:53,898 | INFO     | mean y: 3048588.9691725257
[2025-11-26 07:47:53] 2025-11-26 12:46:53,898 | INFO     | intersect: -9886983003.237465
[2025-11-26 07:47:53] 2025-11-26 12:46:53,900 | INFO     | chi2: 2.840312765464655
[2025-11-26 07:47:53] 2025-11-26 12:46:53,900 | INFO     | current chi2=2.840312765464655 (change=50.68604552137709 %)
[2025-11-26 07:47:53] 2025-11-26 12:46:53,901 | INFO     | sum of square deviations: 1944246727349.1943
[2025-11-26 07:47:53] 2025-11-26 12:46:53,990 | INFO     | sum of deviations: 11035026901633.986
[2025-11-26 07:47:53] 2025-11-26 12:46:53,991 | INFO     | mean x: 1764104335.2326465
[2025-11-26 07:47:53] 2025-11-26 12:46:53,991 | INFO     | mean y: 3049031.226138829
[2025-11-26 07:47:53] 2025-11-26 12:46:53,991 | INFO     | intersect: -10009537603.353317
[2025-11-26 07:47:53] 2025-11-26 12:46:53,992 | INFO     | chi2: 2.6525861753209057
[2025-11-26 07:47:53] 2025-11-26 12:46:53,992 | INFO     | current chi2=2.6525861753209057 (change=6.609363321755121 %)
[2025-11-26 07:47:53] 2025-11-26 12:46:53,992 | INFO     | right removable region: 1843
[2025-11-26 07:47:53] 2025-11-26 12:46:53,994 | INFO     | sum of square deviations: 1960102651468.6235
[2025-11-26 07:47:53] 2025-11-26 12:46:54,058 | INFO     | sum of deviations: 9860393426255.607
[2025-11-26 07:47:53] 2025-11-26 12:46:54,058 | INFO     | mean x: 1764104792.7274203
[2025-11-26 07:47:53] 2025-11-26 12:46:54,059 | INFO     | mean y: 3047561.511087074
[2025-11-26 07:47:53] 2025-11-26 12:46:54,059 | INFO     | intersect: -8871368933.156826
[2025-11-26 07:47:53] 2025-11-26 12:46:54,060 | INFO     | chi2: 3.6840758980433916
[2025-11-26 07:47:53] 2025-11-26 12:46:54,060 | INFO     | current chi2=3.6840758980433916 (change=36.03649804313622 %)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,062 | INFO     | sum of square deviations: 1944243393772.5063
[2025-11-26 07:47:53] 2025-11-26 12:46:54,136 | INFO     | sum of deviations: 9664429377335.758
[2025-11-26 07:47:53] 2025-11-26 12:46:54,136 | INFO     | mean x: 1764104945.229935
[2025-11-26 07:47:53] 2025-11-26 12:46:54,136 | INFO     | mean y: 3049445.830802603
[2025-11-26 07:47:53] 2025-11-26 12:46:54,136 | INFO     | intersect: -8765949184.686525
[2025-11-26 07:47:53] 2025-11-26 12:46:54,138 | INFO     | chi2: 3.5788153381421473
[2025-11-26 07:47:53] 2025-11-26 12:46:54,138 | INFO     | current chi2=3.5788153381421473 (change=2.857176747014038 %)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,138 | INFO     | left removable region: 20
[2025-11-26 07:47:53] 2025-11-26 12:46:54,140 | INFO     | sum of square deviations: 1878572023192.3447
[2025-11-26 07:47:53] 2025-11-26 12:46:54,211 | INFO     | sum of deviations: 9971380935766.34
[2025-11-26 07:47:53] 2025-11-26 12:46:54,212 | INFO     | mean x: 1764104914.7427318
[2025-11-26 07:47:53] 2025-11-26 12:46:54,212 | INFO     | mean y: 3059050.6851343936
[2025-11-26 07:47:53] 2025-11-26 12:46:54,212 | INFO     | intersect: -9360735309.280325
[2025-11-26 07:47:53] 2025-11-26 12:46:54,214 | INFO     | chi2: 0.3371193939916888
[2025-11-26 07:47:53] 2025-11-26 12:46:54,214 | INFO     | current memory leak: 5.31 B/s (using 1823 data points, chi2=0.34)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | could have reported an average CPU frequency of 3216 MHz (65 samples)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | ..............................
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . Timing measurements:
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . get job = 0 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . initial setup = 1 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . payload setup = 10 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . stage-in = 0 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . payload execution = 113077 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . stage-out = 6 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | . log creation = 1 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,216 | INFO     | ..............................
[2025-11-26 07:47:53] 2025-11-26 12:46:54,298 | INFO     | 
[2025-11-26 07:47:53] 2025-11-26 12:46:54,302 | INFO     | job summary report
[2025-11-26 07:47:53] 2025-11-26 12:46:54,302 | INFO     | --------------------------------------------------
[2025-11-26 07:47:53] 2025-11-26 12:46:54,302 | INFO     | PanDA job id: 6895882707
[2025-11-26 07:47:53] 2025-11-26 12:46:54,302 | INFO     | task id: 47556149
[2025-11-26 07:47:53] 2025-11-26 12:46:54,302 | INFO     | errors: (none)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,302 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | pilot state: finished 
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | transexitcode: 0
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | exeerrorcode: 0
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | exeerrordiag: 
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | exitcode: 0
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | exitmsg: OK
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | cpuconsumptiontime: 217713 s
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | nevents: 1000
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | neventsw: 0
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | pid: 1660164
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | pgrp: 1660164
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | corecount: 9
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | event service: False
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | sizes: {0: 2284196, 1: 2284338, 7: 2284600, 11: 2284628, 113092: 2360740, 113099: 2369739, 113101: 2369923, 113115: 2370265}
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | --------------------------------------------------
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | 
[2025-11-26 07:47:53] 2025-11-26 12:46:54,303 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 07:47:53] 2025-11-26 12:46:54,402 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,403 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | job 6895882707 has completed (purged errors)
[2025-11-26 07:47:53] 2025-11-26 12:46:54,404 | INFO     | overall cleanup function is called
[2025-11-26 07:47:53] 2025-11-26 12:46:55,432 | INFO     | --- collectZombieJob: --- 10, [1660164]
[2025-11-26 07:47:53] 2025-11-26 12:46:55,432 | INFO     | zombie collector waiting for pid 1660164
[2025-11-26 07:47:53] 2025-11-26 12:46:55,432 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 07:47:53] 2025-11-26 12:46:55,433 | INFO     | collected zombie processes
[2025-11-26 07:47:53] 2025-11-26 12:46:55,433 | INFO     | will attempt to kill all subprocesses of pid=1660164
[2025-11-26 07:47:53] 2025-11-26 12:46:55,676 | INFO     | PID=1586407 has CPU usage=17.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 07:47:53] 2025-11-26 12:46:55,678 | INFO     | .. there are 39 such processes running
[2025-11-26 07:47:53] 2025-11-26 12:46:56,039 | INFO     | process IDs to be killed: [1660164] (in reverse order)
[2025-11-26 07:47:53] 2025-11-26 12:46:56,259 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 07:47:53] 2025-11-26 12:46:56,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 07:47:53] 2025-11-26 12:46:56,280 | INFO     | did not find any defunct processes belonging to 1660164
[2025-11-26 07:47:53] 2025-11-26 12:46:56,308 | INFO     | did not find any defunct processes belonging to 1660164
[2025-11-26 07:47:53] 2025-11-26 12:46:56,309 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 07:47:53] 2025-11-26 12:46:56,309 | INFO     | ready for new job
[2025-11-26 07:47:53] 2025-11-26 12:46:56,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 07:47:53] 2025-11-26 12:46:56,319 | INFO     | ***************************************
[2025-11-26 07:47:53] 2025-11-26 12:46:56,319 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 07:47:53] 2025-11-26 12:46:56,319 | INFO     | ***************************************
[2025-11-26 07:47:53] 2025-11-26 12:46:56,319 | INFO     | 
[2025-11-26 07:47:53] 2025-11-26 12:46:56,324 | INFO     | architecture information:
[2025-11-26 07:47:53] 2025-11-26 12:46:56,329 | INFO     | executing command: cat /etc/os-release
[2025-11-26 07:47:53] 2025-11-26 12:46:56,505 | INFO     | cat /etc/os-release:
[2025-11-26 07:47:53] NAME="CentOS Linux"
[2025-11-26 07:47:53] VERSION="7 (Core)"
[2025-11-26 07:47:53] ID="centos"
[2025-11-26 07:47:53] ID_LIKE="rhel fedora"
[2025-11-26 07:47:53] VERSION_ID="7"
[2025-11-26 07:47:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 07:47:53] ANSI_COLOR="0;31"
[2025-11-26 07:47:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 07:47:53] HOME_URL="https://www.centos.org/"
[2025-11-26 07:47:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 07:47:53] 
[2025-11-26 07:47:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 07:47:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 07:47:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 07:47:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 07:47:53] 
[2025-11-26 07:47:53] 2025-11-26 12:46:56,506 | INFO     | ***************************************
[2025-11-26 07:47:53] 2025-11-26 12:46:57,009 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 07:47:53] 2025-11-26 12:46:57,041 | INFO     | sufficient remaining disk space (116419198976 B)
[2025-11-26 07:47:53] 2025-11-26 12:46:57,042 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 07:47:53] 2025-11-26 12:46:57,042 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 07:47:53] 2025-11-26 12:46:57,042 | INFO     | update_server=False
[2025-11-26 07:47:53] 2025-11-26 12:46:57,042 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 07:47:53] 2025-11-26 12:46:57,042 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 07:47:53] 2025-11-26 12:46:57,042 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:47:53] 2025-11-26 12:46:57,043 | INFO     | aborting loop
[2025-11-26 07:47:53] 2025-11-26 12:46:57,138 | INFO     | all payload control threads have been joined
[2025-11-26 07:47:53] 2025-11-26 12:46:57,239 | INFO     | all job control threads have been joined
[2025-11-26 07:47:53] 2025-11-26 12:46:58,047 | INFO     | [job] retrieve thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:58,054 | INFO     | [job] job monitor thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:58,144 | INFO     | [payload] control thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:58,157 | INFO     | all data control threads have been joined
[2025-11-26 07:47:53] 2025-11-26 12:46:58,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:58,245 | INFO     | [job] control thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:58,403 | INFO     | [data] copytool_in thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:58,408 | INFO     | [payload] validate_post thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,067 | INFO     | [data] copytool_out thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,136 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,165 | INFO     | [data] control thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,222 | INFO     | [job] validate thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,230 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 07:47:53] 2025-11-26 12:46:59,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 07:47:53] 2025-11-26 12:46:59,330 | INFO     | [payload] failed_post thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,348 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:46:59,506 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:47:00,322 | INFO     | [job] queue monitor thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:47:03,239 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 07:47:53] 2025-11-26 12:47:28,444 | INFO     | PID=1586407 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 07:47:53] 2025-11-26 12:47:28,444 | INFO     | .. there are 39 such processes running
[2025-11-26 07:47:53] 2025-11-26 12:47:28,445 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 07:47:53] 2025-11-26 12:47:28,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 07:47:53] 2025-11-26 12:47:28,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 07:47:53] 2025-11-26 12:47:46,339 | INFO     | [monitor] cgroup control has ended
[2025-11-26 07:47:53] 2025-11-26 12:47:46,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490680575808)>', '<ExcThread(monitor, started 140489923753728)>']
[2025-11-26 07:47:53] 2025-11-26 12:47:47,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 07:47:53] 2025-11-26 12:47:47,563 | INFO     | [monitor] control thread has ended
[2025-11-26 07:47:53] 2025-11-26 12:47:51,809 | INFO     | all workflow threads have been joined
[2025-11-26 07:47:53] 2025-11-26 12:47:51,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 07:47:53] 2025-11-26 12:47:51,812 | INFO     | traces error code: 0
[2025-11-26 07:47:53] 2025-11-26 12:47:51,812 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 07:47:53] 2025-11-26 12:47:52,286 [wrapper] ==== pilot stdout END ====
[2025-11-26 07:47:53] 2025-11-26 12:47:52,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 07:47:53] 2025-11-26 12:47:52,297 [wrapper] pilotpid: 1586407
[2025-11-26 07:47:53] 2025-11-26 12:47:52,301 [wrapper] Pilot exit status: 0
[2025-11-26 07:47:53] 2025-11-26 12:47:52,323 [wrapper] pandaids: 6895882707 6895882707
[2025-11-26 07:47:53] 2025-11-26 12:47:52,474 [wrapper] cleanup supervisor_pilot 3605563 1586408
[2025-11-26 07:47:53] 2025-11-26 12:47:52,487 [wrapper] Test setup, not cleaning
[2025-11-26 07:47:53] 2025-11-26 12:47:52,525 [wrapper] apfmon messages muted
[2025-11-26 07:47:53] 2025-11-26 12:47:52,540 [wrapper] ==== wrapper stdout END ====
[2025-11-26 07:47:53] 2025-11-26 12:47:52,549 [wrapper] ==== wrapper stderr END ====
[2025-11-26 07:47:53]  *** Error codes and diagnostics ***
[2025-11-26 07:47:53]     "exeErrorCode": 0,
[2025-11-26 07:47:53]     "exeErrorDiag": "",
[2025-11-26 07:47:53]     "pilotErrorCode": 0,
[2025-11-26 07:47:53]     "pilotErrorDiag": "",
[2025-11-26 07:47:53]  *** Listing of results directory ***
[2025-11-26 07:47:53] total 1741276
[2025-11-26 07:47:53] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 11:06 pilot3.tar.gz
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 11:37 queuedata.json
[2025-11-26 07:47:53] -rwx------. 1 boincer umatlas     36292 Nov 24 11:40 runpilot2-wrapper.sh
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 07:47:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-26 07:47:53] -rw-r--r--. 3 boincer umatlas 409917102 Nov 25 00:04 EVNT.47483658._001389.pool.root.1
[2025-11-26 07:47:53] -rw-r--r--. 3 boincer umatlas 409917102 Nov 25 00:04 ATLAS.root_0
[2025-11-26 07:47:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-26 07:47:53] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 00:04 input.tar.gz
[2025-11-26 07:47:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:21 pandaJob.out
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas        57 Nov 25 00:21 setup.sh.local
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas    991801 Nov 25 00:21 agis_schedconf.cvmfs.json
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas       533 Nov 26 07:38 boinc_task_state.xml
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 07:38 init_data.xml
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas 926217960 Nov 26 07:45 HITS.47556149._003753.pool.root.1
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas      1074 Nov 26 07:46 memory_monitor_summary.json
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas   1516240 Nov 26 07:46 agis_ddmendpoints.agis.ALL.json
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas   2838112 Nov 26 07:46 log.47556149._003753.job.log.tgz.1
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas      8631 Nov 26 07:46 heartbeat.json
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas        96 Nov 26 07:47 pilot_heartbeat.json
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas        29 Nov 26 07:47 wrapper_checkpoint.txt
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 07:47 boinc_mmap_file
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas      4825 Nov 26 07:47 pilotlog.txt
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas  13707657 Nov 26 07:47 log.47556149._003753.job.log.1
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas       353 Nov 26 07:47 output.list
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas       620 Nov 26 07:47 runtime_log
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas  16568320 Nov 26 07:47 result.tar.gz
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas       794 Nov 26 07:47 xuOKDm6moh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHmLKDmdubv7m.diag
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas      9429 Nov 26 07:47 runtime_log.err
[2025-11-26 07:47:53] -rw-r--r--. 1 boincer umatlas     23520 Nov 26 07:47 stderr.txt
[2025-11-26 07:47:53] HITS file was successfully produced:
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas 926217960 Nov 26 07:45 shared/HITS.pool.root.1
[2025-11-26 07:47:53]  *** Contents of shared directory: ***
[2025-11-26 07:47:53] total 1321604
[2025-11-26 07:47:53] -rw-r--r--. 3 boincer umatlas 409917102 Nov 25 00:04 ATLAS.root_0
[2025-11-26 07:47:53] -rw-r--r--. 2 boincer umatlas    590106 Nov 25 00:04 input.tar.gz
[2025-11-26 07:47:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas 926217960 Nov 26 07:45 HITS.pool.root.1
[2025-11-26 07:47:53] -rw-------. 1 boincer umatlas  16568320 Nov 26 07:47 result.tar.gz
07:47:54 (1544298): run_atlas exited; CPU time 219373.350059
07:47:54 (1544298): called boinc_finish(0)

</stderr_txt>
]]>

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