Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:31 (3157547): wrapper (7.7.26015): starting
00:11:31 (3157547): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:11:31] Arguments: --nthreads 9
[2025-11-25 00:11:31] Threads: 9
[2025-11-25 00:11:31] Checking for CVMFS
[2025-11-25 00:11:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:11:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:11:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:11:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:11:33] 2.13.2.0 5986 33717 360732 153271 3 77 25270072 40960000 17526 16776704 0 67359416 99.785 58642561 35774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:11:33] CVMFS is ok
[2025-11-25 00:11:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:11:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:11:33] Further information can be found at the LHC@home message board.
[2025-11-25 00:11:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:11:33] Checking for apptainer binary...
[2025-11-25 00:11:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:11:33] Running /usr/bin/apptainer --version
[2025-11-25 00:11:34] apptainer version 1.4.4-1.el9
[2025-11-25 00:11:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:11:34] c-210-31-1.aglt2.org
[2025-11-25 00:11:34] apptainer works
[2025-11-25 00:11:34] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:11:34] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:11:34] Starting ATLAS job with PandaID=6895384300
[2025-11-25 00:11:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 08:56:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 08:56:31] 2025-11-26 13:55:11,732 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:56:31] 2025-11-26 13:55:12,188 | INFO     | time since job start (117748s) is within the limit (172800.0s)
[2025-11-26 08:56:31] 2025-11-26 13:55:14,218 | INFO     | time since job start (117750s) is within the limit (172800.0s)
[2025-11-26 08:56:31] 2025-11-26 13:55:14,241 | INFO     | monitor loop #7090: job 0:6895384300 is in state 'finished'
[2025-11-26 08:56:31] 2025-11-26 13:55:14,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:56:31] 2025-11-26 13:55:16,254 | INFO     | time since job start (117752s) is within the limit (172800.0s)
[2025-11-26 08:56:31] 2025-11-26 13:55:16,817 | INFO     | monitor loop #7091: job 0:6895384300 is in state 'finished'
[2025-11-26 08:56:31] 2025-11-26 13:55:16,817 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:56:31] 2025-11-26 13:55:18,261 | INFO     | time since job start (117754s) is within the limit (172800.0s)
[2025-11-26 08:56:31] 2025-11-26 13:55:19,370 | INFO     | monitor loop #7092: job 0:6895384300 is in state 'finished'
[2025-11-26 08:56:31] 2025-11-26 13:55:19,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:56:31] 2025-11-26 13:55:20,284 | INFO     | time since job start (117756s) is within the limit (172800.0s)
[2025-11-26 08:56:31] 2025-11-26 13:55:21,853 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 08:56:31] 2025-11-26 13:55:21,861 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2759.7521249999995
[2025-11-26 08:56:31] 2025-11-26 13:55:21,875 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895384300/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 08:56:31] 2025-11-26 13:55:21,876 | INFO     | extracted standard info from prmon json
[2025-11-26 08:56:31] 2025-11-26 13:55:21,876 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 08:56:31] 2025-11-26 13:55:21,876 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 08:56:31] 2025-11-26 13:55:21,932 | INFO     | fitting pss+swap vs Time
[2025-11-26 08:56:31] 2025-11-26 13:55:21,943 | INFO     | sum of square deviations: 2218635668340.901
[2025-11-26 08:56:31] 2025-11-26 13:55:21,999 | INFO     | monitor loop #7093: job 0:6895384300 is in state 'finished'
[2025-11-26 08:56:31] 2025-11-26 13:55:21,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 08:56:31] 2025-11-26 13:55:22,065 | INFO     | sum of deviations: 14133648737952.543
[2025-11-26 08:56:31] 2025-11-26 13:55:22,065 | INFO     | mean x: 1764106488.3165543
[2025-11-26 08:56:31] 2025-11-26 13:55:22,066 | INFO     | mean y: 2977082.0368448365
[2025-11-26 08:56:31] 2025-11-26 13:55:22,066 | INFO     | intersect: -11235128298.66962
[2025-11-26 08:56:31] 2025-11-26 13:55:22,072 | INFO     | chi2: 33.668443320930336
[2025-11-26 08:56:31] 2025-11-26 13:55:22,074 | INFO     | sum of square deviations: 2201412183943.3813
[2025-11-26 08:56:31] 2025-11-26 13:55:22,199 | INFO     | sum of deviations: 14785451178746.42
[2025-11-26 08:56:31] 2025-11-26 13:55:22,200 | INFO     | mean x: 1764106335.8314257
[2025-11-26 08:56:31] 2025-11-26 13:55:22,200 | INFO     | mean y: 2982851.9365244536
[2025-11-26 08:56:31] 2025-11-26 13:55:22,200 | INFO     | intersect: -11845369897.629078
[2025-11-26 08:56:31] 2025-11-26 13:55:22,206 | INFO     | chi2: 30.472757025636152
[2025-11-26 08:56:31] 2025-11-26 13:55:22,206 | INFO     | current chi2=30.472757025636152 (change=9.491636618992576 %)
[2025-11-26 08:56:31] 2025-11-26 13:55:22,207 | INFO     | right removable region: 1921
[2025-11-26 08:56:31] 2025-11-26 13:55:22,209 | INFO     | sum of square deviations: 2201403936136.6787
[2025-11-26 08:56:31] 2025-11-26 13:55:22,301 | INFO     | time since job start (117758s) is within the limit (172800.0s)
[2025-11-26 08:56:31] 2025-11-26 13:55:22,345 | INFO     | sum of deviations: 13304692876994.67
[2025-11-26 08:56:31] 2025-11-26 13:55:22,346 | INFO     | mean x: 1764106640.8381894
[2025-11-26 08:56:31] 2025-11-26 13:55:22,346 | INFO     | mean y: 2984418.838189386
[2025-11-26 08:56:31] 2025-11-26 13:55:22,346 | INFO     | intersect: -10658801304.961668
[2025-11-26 08:56:31] 2025-11-26 13:55:22,348 | INFO     | chi2: 29.172080905413672
[2025-11-26 08:56:31] 2025-11-26 13:55:22,348 | INFO     | current chi2=29.172080905413672 (change=13.354827167555602 %)
[2025-11-26 08:56:31] 2025-11-26 13:55:22,348 | INFO     | left removable region: 10
[2025-11-26 08:56:31] 2025-11-26 13:55:22,403 | INFO     | sum of square deviations: 2163818686392.975
[2025-11-26 08:56:31] 2025-11-26 13:55:22,571 | INFO     | sum of deviations: 13390343232544.744
[2025-11-26 08:56:31] 2025-11-26 13:55:22,571 | INFO     | mean x: 1764106610.3772893
[2025-11-26 08:56:31] 2025-11-26 13:55:22,571 | INFO     | mean y: 2997490.709052852
[2025-11-26 08:56:31] 2025-11-26 13:55:22,571 | INFO     | intersect: -10913810447.173294
[2025-11-26 08:56:31] 2025-11-26 13:55:22,587 | INFO     | chi2: 22.45867061023176
[2025-11-26 08:56:31] 2025-11-26 13:55:22,588 | INFO     | current memory leak: 6.19 B/s (using 1911 data points, chi2=22.46)
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | could have reported an average CPU frequency of 2820 MHz (67 samples)
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | ..............................
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . Timing measurements:
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . get job = 0 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . initial setup = 8 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . payload setup = 54 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . stage-in = 1 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . payload execution = 117571 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,590 | INFO     | . stage-out = 14 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,591 | INFO     | . log creation = 6 s
[2025-11-26 08:56:31] 2025-11-26 13:55:22,591 | INFO     | ..............................
[2025-11-26 08:56:31] 2025-11-26 13:55:23,094 | INFO     | 
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | job summary report
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | --------------------------------------------------
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | PanDA job id: 6895384300
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | task id: 47556149
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | errors: (none)
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | pilot state: finished 
[2025-11-26 08:56:31] 2025-11-26 13:55:23,095 | INFO     | transexitcode: 0
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | exeerrorcode: 0
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | exeerrordiag: 
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | exitcode: 0
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | exitmsg: OK
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | cpuconsumptiontime: 261881 s
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | nevents: 1000
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | neventsw: 0
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | pid: 3181681
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | pgrp: 3181681
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | corecount: 9
[2025-11-26 08:56:31] 2025-11-26 13:55:23,096 | INFO     | event service: False
[2025-11-26 08:56:31] 2025-11-26 13:55:23,097 | INFO     | sizes: {0: 2283481, 1: 2284082, 2: 2284194, 3: 2284393, 4: 2284393, 15: 2284421, 26: 2284577, 37: 2284605, 41: 2284895, 48: 2284923, 117627: 2364902, 117642: 23739
[2025-11-26 08:56:31] 2025-11-26 13:55:23,097 | INFO     | --------------------------------------------------
[2025-11-26 08:56:31] 2025-11-26 13:55:23,097 | INFO     | 
[2025-11-26 08:56:31] 2025-11-26 13:55:23,097 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 08:56:31] 2025-11-26 13:55:23,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 08:56:31] 2025-11-26 13:55:23,187 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,188 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 08:56:31] 2025-11-26 13:55:23,188 | INFO     | job 6895384300 has completed (purged errors)
[2025-11-26 08:56:31] 2025-11-26 13:55:23,188 | INFO     | overall cleanup function is called
[2025-11-26 08:56:31] 2025-11-26 13:55:24,239 | INFO     | --- collectZombieJob: --- 10, [3181681]
[2025-11-26 08:56:31] 2025-11-26 13:55:24,239 | INFO     | zombie collector waiting for pid 3181681
[2025-11-26 08:56:31] 2025-11-26 13:55:24,239 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 08:56:31] 2025-11-26 13:55:24,239 | INFO     | collected zombie processes
[2025-11-26 08:56:31] 2025-11-26 13:55:24,239 | INFO     | will attempt to kill all subprocesses of pid=3181681
[2025-11-26 08:56:31] 2025-11-26 13:55:24,449 | INFO     | PID=3164057 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:56:31] 2025-11-26 13:55:24,449 | INFO     | .. there are 19 such processes running
[2025-11-26 08:56:31] 2025-11-26 13:55:24,968 | INFO     | process IDs to be killed: [3181681] (in reverse order)
[2025-11-26 08:56:31] 2025-11-26 13:55:25,325 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 08:56:31] 2025-11-26 13:55:25,326 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 08:56:31] 2025-11-26 13:55:25,349 | INFO     | did not find any defunct processes belonging to 3181681
[2025-11-26 08:56:31] 2025-11-26 13:55:25,369 | INFO     | did not find any defunct processes belonging to 3181681
[2025-11-26 08:56:31] 2025-11-26 13:55:25,389 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 08:56:31] 2025-11-26 13:55:25,389 | INFO     | ready for new job
[2025-11-26 08:56:31] 2025-11-26 13:55:25,389 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 08:56:31] 2025-11-26 13:55:25,397 | INFO     | ***************************************
[2025-11-26 08:56:31] 2025-11-26 13:55:25,407 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 08:56:31] 2025-11-26 13:55:25,407 | INFO     | ***************************************
[2025-11-26 08:56:31] 2025-11-26 13:55:25,407 | INFO     | 
[2025-11-26 08:56:31] 2025-11-26 13:55:25,418 | INFO     | architecture information:
[2025-11-26 08:56:31] 2025-11-26 13:55:25,444 | INFO     | executing command: cat /etc/os-release
[2025-11-26 08:56:31] 2025-11-26 13:55:25,501 | INFO     | cat /etc/os-release:
[2025-11-26 08:56:31] NAME="CentOS Linux"
[2025-11-26 08:56:31] VERSION="7 (Core)"
[2025-11-26 08:56:31] ID="centos"
[2025-11-26 08:56:31] ID_LIKE="rhel fedora"
[2025-11-26 08:56:31] VERSION_ID="7"
[2025-11-26 08:56:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 08:56:31] ANSI_COLOR="0;31"
[2025-11-26 08:56:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 08:56:31] HOME_URL="https://www.centos.org/"
[2025-11-26 08:56:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 08:56:31] 
[2025-11-26 08:56:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 08:56:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 08:56:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 08:56:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 08:56:31] 
[2025-11-26 08:56:31] 2025-11-26 13:55:25,502 | INFO     | ***************************************
[2025-11-26 08:56:31] 2025-11-26 13:55:26,005 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 08:56:31] 2025-11-26 13:55:26,075 | INFO     | sufficient remaining disk space (69777489920 B)
[2025-11-26 08:56:31] 2025-11-26 13:55:26,075 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 08:56:31] 2025-11-26 13:55:26,076 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 08:56:31] 2025-11-26 13:55:26,076 | INFO     | update_server=False
[2025-11-26 08:56:31] 2025-11-26 13:55:26,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 08:56:31] 2025-11-26 13:55:26,076 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:56:31] 2025-11-26 13:55:26,076 | INFO     | aborting loop
[2025-11-26 08:56:31] 2025-11-26 13:55:26,360 | INFO     | all payload control threads have been joined
[2025-11-26 08:56:31] 2025-11-26 13:55:27,082 | INFO     | [job] retrieve thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:27,088 | INFO     | [job] job monitor thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:27,157 | INFO     | all data control threads have been joined
[2025-11-26 08:56:31] 2025-11-26 13:55:27,172 | INFO     | all job control threads have been joined
[2025-11-26 08:56:31] 2025-11-26 13:55:27,292 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 08:56:31] 2025-11-26 13:55:27,367 | INFO     | [payload] control thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:27,549 | INFO     | [payload] failed_post thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:27,668 | INFO     | [payload] validate_post thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,114 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,133 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,133 | INFO     | [data] copytool_in thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,134 | INFO     | [job] validate thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,134 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,163 | INFO     | [data] control thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 08:56:31] 2025-11-26 13:55:28,178 | INFO     | [job] control thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,417 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:28,620 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 08:56:31] 2025-11-26 13:55:29,182 | INFO     | [job] queue monitor thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:29,300 | INFO     | [data] copytool_out thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:32,661 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 08:56:31] 2025-11-26 13:55:59,689 | INFO     | PID=3164057 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 08:56:31] 2025-11-26 13:55:59,689 | INFO     | .. there are 19 such processes running
[2025-11-26 08:56:31] 2025-11-26 13:55:59,689 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 08:56:31] 2025-11-26 13:55:59,689 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 08:56:31] 2025-11-26 13:55:59,689 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 08:56:31] 2025-11-26 13:56:23,697 | INFO     | [monitor] cgroup control has ended
[2025-11-26 08:56:31] 2025-11-26 13:56:24,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140698528831296)>', '<ExcThread(monitor, started 140697801836288)>']
[2025-11-26 08:56:31] 2025-11-26 13:56:24,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 08:56:31] 2025-11-26 13:56:24,970 | INFO     | [monitor] control thread has ended
[2025-11-26 08:56:31] 2025-11-26 13:56:29,358 | INFO     | all workflow threads have been joined
[2025-11-26 08:56:31] 2025-11-26 13:56:29,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 08:56:31] 2025-11-26 13:56:29,358 | INFO     | traces error code: 0
[2025-11-26 08:56:31] 2025-11-26 13:56:29,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 08:56:31] 2025-11-26 13:56:29,979 [wrapper] ==== pilot stdout END ====
[2025-11-26 08:56:31] 2025-11-26 13:56:30,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 08:56:31] 2025-11-26 13:56:30,036 [wrapper] pilotpid: 3164057
[2025-11-26 08:56:31] 2025-11-26 13:56:30,101 [wrapper] Pilot exit status: 0
[2025-11-26 08:56:31] 2025-11-26 13:56:30,212 [wrapper] pandaids: 6895384300
[2025-11-26 08:56:31] 2025-11-26 13:56:30,492 [wrapper] cleanup supervisor_pilot 2813193 3164058
[2025-11-26 08:56:31] 2025-11-26 13:56:30,511 [wrapper] Test setup, not cleaning
[2025-11-26 08:56:31] 2025-11-26 13:56:30,535 [wrapper] apfmon messages muted
[2025-11-26 08:56:31] 2025-11-26 13:56:30,565 [wrapper] ==== wrapper stdout END ====
[2025-11-26 08:56:31] 2025-11-26 13:56:30,616 [wrapper] ==== wrapper stderr END ====
[2025-11-26 08:56:31]  *** Error codes and diagnostics ***
[2025-11-26 08:56:31]     "exeErrorCode": 0,
[2025-11-26 08:56:31]     "exeErrorDiag": "",
[2025-11-26 08:56:31]     "pilotErrorCode": 0,
[2025-11-26 08:56:31]     "pilotErrorDiag": "",
[2025-11-26 08:56:31]  *** Listing of results directory ***
[2025-11-26 08:56:31] total 1335796
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:40 pilot3.tar.gz
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 23:45 queuedata.json
[2025-11-26 08:56:31] -rwx------. 1 boincer umatlas     36292 Nov 23 23:46 runpilot2-wrapper.sh
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 08:56:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:11 run_atlas
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:11 job.xml
[2025-11-26 08:56:31] -rw-r--r--. 2 boincer umatlas 409079696 Nov 25 00:11 EVNT.47483658._001220.pool.root.1
[2025-11-26 08:56:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-26 08:56:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:11 shared
[2025-11-26 08:56:31] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:11 input.tar.gz
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:11 boinc_lockfile
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:11 pandaJob.out
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas        57 Nov 25 00:11 setup.sh.local
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas    991801 Nov 25 00:12 agis_schedconf.cvmfs.json
[2025-11-26 08:56:31] drwx------. 5 boincer umatlas      4096 Nov 25 00:12 pilot3
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas       533 Nov 26 08:16 boinc_task_state.xml
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas 919513378 Nov 26 08:52 HITS.47556149._002070.pool.root.1
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas      1072 Nov 26 08:54 memory_monitor_summary.json
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 08:54 init_data.xml
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas   1516240 Nov 26 08:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas   2916302 Nov 26 08:54 log.47556149._002070.job.log.tgz.1
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas        95 Nov 26 08:55 pilot_heartbeat.json
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas      8671 Nov 26 08:55 heartbeat.json
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 08:56 boinc_mmap_file
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas      4824 Nov 26 08:56 pilotlog.txt
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas        29 Nov 26 08:56 wrapper_checkpoint.txt
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas  14755257 Nov 26 08:56 log.47556149._002070.job.log.1
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas       353 Nov 26 08:56 output.list
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas       620 Nov 26 08:56 runtime_log
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas  17694720 Nov 26 08:56 result.tar.gz
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas       669 Nov 26 08:56 vc5NDmCedh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhuIKDmbkA1Fo.diag
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 08:56 runtime_log.err
[2025-11-26 08:56:31] -rw-r--r--. 1 boincer umatlas     21912 Nov 26 08:56 stderr.txt
[2025-11-26 08:56:31] HITS file was successfully produced:
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas 919513378 Nov 26 08:52 shared/HITS.pool.root.1
[2025-11-26 08:56:31]  *** Contents of shared directory: ***
[2025-11-26 08:56:31] total 1315336
[2025-11-26 08:56:31] -rw-r--r--. 2 boincer umatlas 409079696 Nov 25 00:11 ATLAS.root_0
[2025-11-26 08:56:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:11 start_atlas.sh
[2025-11-26 08:56:31] -rw-r--r--. 2 boincer umatlas    590109 Nov 25 00:11 input.tar.gz
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas 919513378 Nov 26 08:52 HITS.pool.root.1
[2025-11-26 08:56:31] -rw-------. 1 boincer umatlas  17694720 Nov 26 08:56 result.tar.gz
08:56:32 (3157547): run_atlas exited; CPU time 263345.842303
08:56:32 (3157547): called boinc_finish(0)

</stderr_txt>
]]>

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