Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:56 (3142213): wrapper (7.7.26015): starting
05:24:56 (3142213): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 05:24:56] Arguments: --nthreads 3
[2025-11-25 05:24:56] Threads: 3
[2025-11-25 05:24:56] Checking for CVMFS
[2025-11-25 05:24:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 05:24:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 05:24:56] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 05:24:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 05:24:57] 2.9.2.0 2683671 97 63592 153270 2 88 35107965 36864000 0 130560 0 1377274 99.999 7907 16136 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 05:24:57] CVMFS is ok
[2025-11-25 05:24:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 05:24:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 05:24:57] Further information can be found at the LHC@home message board.
[2025-11-25 05:24:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 05:24:57] Checking for apptainer binary...
[2025-11-25 05:24:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 05:24:57] Running /usr/bin/apptainer --version
[2025-11-25 05:24:57] apptainer version 1.4.1-1.1
[2025-11-25 05:24:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 05:24:57] thA335
[2025-11-25 05:24:57] apptainer works
[2025-11-25 05:24:57] Set ATHENA_PROC_NUMBER=3
[2025-11-25 05:24:57] Set ATHENA_CORE_NUMBER=3
[2025-11-25 05:24:57] Starting ATLAS job with PandaID=6895383433
[2025-11-25 05:24:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:29:17]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:29:17] 2025-11-25 04:28:28,137 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 05:29:17] 2025-11-25 04:28:28,138 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:29:17] 2025-11-25 04:28:28,138 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:29:17] 2025-11-25 04:28:28,138 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:29:17] 2025-11-25 04:28:28,138 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:29:17] 2025-11-25 04:28:28,376 | INFO     | all job control threads have been joined
[2025-11-25 05:29:17] 2025-11-25 04:28:29,064 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:29:17] 2025-11-25 04:28:29,064 | INFO     | aborting loop
[2025-11-25 05:29:17] 2025-11-25 04:28:29,136 | INFO     | all data control threads have been joined
[2025-11-25 05:29:17] 2025-11-25 04:28:29,143 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:29,144 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:29,167 | INFO     | all payload control threads have been joined
[2025-11-25 05:29:17] 2025-11-25 04:28:29,383 | INFO     | [job] control thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:29,397 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:29,559 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:29,940 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,070 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,098 | INFO     | [job] validate thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,141 | INFO     | [data] control thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,143 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,171 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,173 | INFO     | [payload] control thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,238 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,477 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:30,500 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:28:32,143 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:29:17] 2025-11-25 04:29:10,279 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:29:17] 2025-11-25 04:29:11,936 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139843468621632)>', '<ExcThread(monitor, started 139842969126656)>']
[2025-11-25 05:29:17] 2025-11-25 04:29:12,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:29:17] 2025-11-25 04:29:12,368 | INFO     | [monitor] control thread has ended
[2025-11-25 05:29:17] 2025-11-25 04:29:16,962 | INFO     | all workflow threads have been joined
[2025-11-25 05:29:17] 2025-11-25 04:29:16,964 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:29:17] 2025-11-25 04:29:16,965 | INFO     | traces error code: 0
[2025-11-25 05:29:17] 2025-11-25 04:29:16,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:29:17] 2025-11-25 04:29:17,012 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:29:17] 2025-11-25 04:29:17,016 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:29:17] 2025-11-25 04:29:17,019 [wrapper] pilotpid: 3145935
[2025-11-25 05:29:17] 2025-11-25 04:29:17,022 [wrapper] Pilot exit status: 0
[2025-11-25 05:29:17] 2025-11-25 04:29:17,029 [wrapper] pandaids: 6895383433
[2025-11-25 05:29:17] 2025-11-25 04:29:17,046 [wrapper] cleanup supervisor_pilot 3145941 3145936
[2025-11-25 05:29:17] 2025-11-25 04:29:17,049 [wrapper] Test setup, not cleaning
[2025-11-25 05:29:17] 2025-11-25 04:29:17,051 [wrapper] apfmon messages muted
[2025-11-25 05:29:17] 2025-11-25 04:29:17,054 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:29:17] 2025-11-25 04:29:17,057 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:29:17]  *** Error codes and diagnostics ***
[2025-11-25 05:29:17]     "exeErrorCode": 65,
[2025-11-25 05:29:17]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 05:29:17]     "pilotErrorCode": 1305,
[2025-11-25 05:29:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 05:29:17]  *** Listing of results directory ***
[2025-11-25 05:29:17] total 403476
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc    576529 Nov 24 05:09 pilot3.tar.gz
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc      5112 Nov 24 05:28 queuedata.json
[2025-11-25 05:29:17] -rwx------ 1 boinc boinc     36292 Nov 24 05:29 runpilot2-wrapper.sh
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc       100 Nov 25 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:29:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 05:24 run_atlas
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc       105 Nov 25 05:24 job.xml
[2025-11-25 05:29:17] -rw-r--r-- 2 boinc boinc 408977125 Nov 25 05:24 EVNT.47483658._001011.pool.root.1
[2025-11-25 05:29:17] drwxrwx--x 2 boinc boinc      4096 Nov 25 05:24 shared
[2025-11-25 05:29:17] -rw-r--r-- 2 boinc boinc    590104 Nov 25 05:24 input.tar.gz
[2025-11-25 05:29:17] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:24 start_atlas.sh
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:24 boinc_setup_complete
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc      6196 Nov 25 05:24 init_data.xml
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc         0 Nov 25 05:24 boinc_lockfile
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc      2785 Nov 25 05:24 pandaJob.out
[2025-11-25 05:29:17] -rw------- 1 boinc boinc    991801 Nov 25 05:25 agis_schedconf.cvmfs.json
[2025-11-25 05:29:17] -rw------- 1 boinc boinc   1516227 Nov 25 05:25 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:29:17] drwx------ 5 boinc boinc      4096 Nov 25 05:25 pilot3
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc       523 Nov 25 05:26 boinc_task_state.xml
[2025-11-25 05:29:17] -rw------- 1 boinc boinc       948 Nov 25 05:26 memory_monitor_summary.json
[2025-11-25 05:29:17] -rw------- 1 boinc boinc     54323 Nov 25 05:26 log.47556137._009976.job.log.tgz.1
[2025-11-25 05:29:17] -rw------- 1 boinc boinc        95 Nov 25 05:28 pilot_heartbeat.json
[2025-11-25 05:29:17] -rw------- 1 boinc boinc      8402 Nov 25 05:28 heartbeat.json
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc      8192 Nov 25 05:29 boinc_mmap_file
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc        23 Nov 25 05:29 wrapper_checkpoint.txt
[2025-11-25 05:29:17] -rw------- 1 boinc boinc      4556 Nov 25 05:29 pilotlog.txt
[2025-11-25 05:29:17] -rw------- 1 boinc boinc     93771 Nov 25 05:29 log.47556137._009976.job.log.1
[2025-11-25 05:29:17] -rw------- 1 boinc boinc       186 Nov 25 05:29 output.list
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc       620 Nov 25 05:29 runtime_log
[2025-11-25 05:29:17] -rw------- 1 boinc boinc    163840 Nov 25 05:29 result.tar.gz
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc      8744 Nov 25 05:29 runtime_log.err
[2025-11-25 05:29:17] -rw------- 1 boinc boinc       649 Nov 25 05:29 jVvNDmzNdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMQLKDmrneCOm.diag
[2025-11-25 05:29:17] -rw-r--r-- 1 boinc boinc      7228 Nov 25 05:29 stderr.txt
[2025-11-25 05:29:17] No HITS result produced
[2025-11-25 05:29:17]  *** Contents of shared directory: ***
[2025-11-25 05:29:17] total 400148
[2025-11-25 05:29:17] -rw-r--r-- 2 boinc boinc 408977125 Nov 25 05:24 ATLAS.root_0
[2025-11-25 05:29:17] -rw-r--r-- 2 boinc boinc    590104 Nov 25 05:24 input.tar.gz
[2025-11-25 05:29:17] -rw-r--r-- 2 boinc boinc     15847 Nov 25 05:24 start_atlas.sh
[2025-11-25 05:29:17] -rw------- 1 boinc boinc    163840 Nov 25 05:29 result.tar.gz
05:29:19 (3142213): run_atlas exited; CPU time 31.931014
05:29:19 (3142213): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN