Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:49:02 (2975726): wrapper (7.7.26015): starting
04:49:02 (2975726): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 04:49:02] Arguments: --nthreads 3
[2025-11-25 04:49:02] Threads: 3
[2025-11-25 04:49:02] Checking for CVMFS
[2025-11-25 04:49:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:49:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:49:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:49:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:49:03] 2.9.2.0 2683671 62 63172 153268 2 88 35096874 36864000 0 130560 0 876448 100.000 3885 22073 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 04:49:03] CVMFS is ok
[2025-11-25 04:49:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:49:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:49:03] Further information can be found at the LHC@home message board.
[2025-11-25 04:49:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:49:03] Checking for apptainer binary...
[2025-11-25 04:49:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:49:03] Running /usr/bin/apptainer --version
[2025-11-25 04:49:03] apptainer version 1.4.1-1.1
[2025-11-25 04:49:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:49:03] thA335
[2025-11-25 04:49:03] apptainer works
[2025-11-25 04:49:03] Set ATHENA_PROC_NUMBER=3
[2025-11-25 04:49:03] Set ATHENA_CORE_NUMBER=3
[2025-11-25 04:49:03] Starting ATLAS job with PandaID=6895384333
[2025-11-25 04:49:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:53:22]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:53:22] 2025-11-25 03:52:34,528 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:53:22] 2025-11-25 03:52:34,528 | INFO     | update_server=False
[2025-11-25 04:53:22] 2025-11-25 03:52:34,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:53:22] 2025-11-25 03:52:34,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:53:22] 2025-11-25 03:52:34,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:53:22] 2025-11-25 03:52:34,528 | INFO     | aborting loop
[2025-11-25 04:53:22] 2025-11-25 03:52:35,247 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:53:22] 2025-11-25 03:52:35,361 | INFO     | all job control threads have been joined
[2025-11-25 04:53:22] 2025-11-25 03:52:35,500 | INFO     | all data control threads have been joined
[2025-11-25 04:53:22] 2025-11-25 03:52:35,530 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:35,533 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:35,534 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:35,740 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:35,909 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:35,928 | INFO     | all payload control threads have been joined
[2025-11-25 04:53:22] 2025-11-25 03:52:36,235 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,367 | INFO     | [job] control thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,506 | INFO     | [data] control thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,607 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,800 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,874 | INFO     | [job] validate thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,934 | INFO     | [payload] control thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:36,950 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:37,009 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:37,253 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:52:37,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:53:22] 2025-11-25 03:52:41,560 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:53:22] 2025-11-25 03:53:04,498 | INFO     | PID=2979459 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 04:53:22] 2025-11-25 03:53:04,498 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:53:22] 2025-11-25 03:53:04,498 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:53:22] 2025-11-25 03:53:04,498 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:53:22] 2025-11-25 03:53:15,564 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:53:22] 2025-11-25 03:53:17,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651471497024)>', '<ExcThread(monitor, started 139650844841728)>']
[2025-11-25 04:53:22] 2025-11-25 03:53:17,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:53:22] 2025-11-25 03:53:17,567 | INFO     | [monitor] control thread has ended
[2025-11-25 04:53:22] 2025-11-25 03:53:22,450 | INFO     | all workflow threads have been joined
[2025-11-25 04:53:22] 2025-11-25 03:53:22,451 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:53:22] 2025-11-25 03:53:22,451 | INFO     | traces error code: 0
[2025-11-25 04:53:22] 2025-11-25 03:53:22,452 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:53:22] 2025-11-25 03:53:22,496 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:53:22] 2025-11-25 03:53:22,499 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:53:22] 2025-11-25 03:53:22,502 [wrapper] pilotpid: 2979459
[2025-11-25 04:53:22] 2025-11-25 03:53:22,505 [wrapper] Pilot exit status: 0
[2025-11-25 04:53:22] 2025-11-25 03:53:22,512 [wrapper] pandaids: 6895384333
[2025-11-25 04:53:22] 2025-11-25 03:53:22,528 [wrapper] cleanup supervisor_pilot 2979465 2979460
[2025-11-25 04:53:22] 2025-11-25 03:53:22,531 [wrapper] Test setup, not cleaning
[2025-11-25 04:53:22] 2025-11-25 03:53:22,533 [wrapper] apfmon messages muted
[2025-11-25 04:53:22] 2025-11-25 03:53:22,536 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:53:22] 2025-11-25 03:53:22,538 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:53:22]  *** Error codes and diagnostics ***
[2025-11-25 04:53:22]     "exeErrorCode": 65,
[2025-11-25 04:53:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 04:53:22]     "pilotErrorCode": 1305,
[2025-11-25 04:53:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 04:53:22]  *** Listing of results directory ***
[2025-11-25 04:53:22] total 405540
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc    576529 Nov 24 05:40 pilot3.tar.gz
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc      5112 Nov 24 05:52 queuedata.json
[2025-11-25 04:53:22] -rwx------ 1 boinc boinc     36292 Nov 24 05:54 runpilot2-wrapper.sh
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc       100 Nov 25 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:53:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 04:49 run_atlas
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc       105 Nov 25 04:49 job.xml
[2025-11-25 04:53:22] -rw-r--r-- 2 boinc boinc 411071849 Nov 25 04:49 EVNT.47483658._001224.pool.root.1
[2025-11-25 04:53:22] -rw-r--r-- 2 boinc boinc    590101 Nov 25 04:49 input.tar.gz
[2025-11-25 04:53:22] -rw-r--r-- 2 boinc boinc     15847 Nov 25 04:49 start_atlas.sh
[2025-11-25 04:53:22] drwxrwx--x 2 boinc boinc      4096 Nov 25 04:49 shared
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc         0 Nov 25 04:49 boinc_setup_complete
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc      6196 Nov 25 04:49 init_data.xml
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc         0 Nov 25 04:49 boinc_lockfile
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc      2785 Nov 25 04:49 pandaJob.out
[2025-11-25 04:53:22] -rw------- 1 boinc boinc    991801 Nov 25 04:49 agis_schedconf.cvmfs.json
[2025-11-25 04:53:22] -rw------- 1 boinc boinc   1516227 Nov 25 04:49 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:53:22] drwx------ 5 boinc boinc      4096 Nov 25 04:49 pilot3
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc       522 Nov 25 04:50 boinc_task_state.xml
[2025-11-25 04:53:22] -rw------- 1 boinc boinc       939 Nov 25 04:50 memory_monitor_summary.json
[2025-11-25 04:53:22] -rw------- 1 boinc boinc     55606 Nov 25 04:50 log.47556149._002103.job.log.tgz.1
[2025-11-25 04:53:22] -rw------- 1 boinc boinc        95 Nov 25 04:52 pilot_heartbeat.json
[2025-11-25 04:53:22] -rw------- 1 boinc boinc      8401 Nov 25 04:52 heartbeat.json
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc      8192 Nov 25 04:53 boinc_mmap_file
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc        22 Nov 25 04:53 wrapper_checkpoint.txt
[2025-11-25 04:53:22] -rw------- 1 boinc boinc      4752 Nov 25 04:53 pilotlog.txt
[2025-11-25 04:53:22] -rw------- 1 boinc boinc     93742 Nov 25 04:53 log.47556149._002103.job.log.1
[2025-11-25 04:53:22] -rw------- 1 boinc boinc       186 Nov 25 04:53 output.list
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc       620 Nov 25 04:53 runtime_log
[2025-11-25 04:53:22] -rw------- 1 boinc boinc    174080 Nov 25 04:53 result.tar.gz
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc      8744 Nov 25 04:53 runtime_log.err
[2025-11-25 04:53:22] -rw------- 1 boinc boinc       649 Nov 25 04:53 jb0MDmyldh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyuIKDmpEUfym.diag
[2025-11-25 04:53:22] -rw-r--r-- 1 boinc boinc      7891 Nov 25 04:53 stderr.txt
[2025-11-25 04:53:22] No HITS result produced
[2025-11-25 04:53:22]  *** Contents of shared directory: ***
[2025-11-25 04:53:22] total 402212
[2025-11-25 04:53:22] -rw-r--r-- 2 boinc boinc 411071849 Nov 25 04:49 ATLAS.root_0
[2025-11-25 04:53:22] -rw-r--r-- 2 boinc boinc    590101 Nov 25 04:49 input.tar.gz
[2025-11-25 04:53:22] -rw-r--r-- 2 boinc boinc     15847 Nov 25 04:49 start_atlas.sh
[2025-11-25 04:53:22] -rw------- 1 boinc boinc    174080 Nov 25 04:53 result.tar.gz
04:53:24 (2975726): run_atlas exited; CPU time 32.018133
04:53:24 (2975726): called boinc_finish(0)

</stderr_txt>
]]>

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