Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:39:48 (2173338): wrapper (7.7.26015): starting
12:39:48 (2173338): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:39:48] Arguments: --nthreads 8
[2025-11-25 12:39:48] Threads: 8
[2025-11-25 12:39:48] Checking for CVMFS
[2025-11-25 12:39:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:39:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:39:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:39:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:39:50] 2.13.2.0 10847 34710 275660 153291 1 415 22490849 40960000 10488 16776704 0 36093561 99.692 28838281 42144 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:39:50] CVMFS is ok
[2025-11-25 12:39:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:39:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:39:50] Further information can be found at the LHC@home message board.
[2025-11-25 12:39:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:39:50] Checking for apptainer binary...
[2025-11-25 12:39:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:39:50] Running /usr/bin/apptainer --version
[2025-11-25 12:39:51] apptainer version 1.4.4-1.el9
[2025-11-25 12:39:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:39:51] c-210-35-4.aglt2.org
[2025-11-25 12:39:51] apptainer works
[2025-11-25 12:39:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:39:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:39:52] Starting ATLAS job with PandaID=6895383668
[2025-11-25 12:39:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:55:35]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:55:35] 2025-11-27 00:54:44,665 | INFO     | log transfer has been attempted: DONE
[2025-11-26 19:55:35] 2025-11-27 00:54:44,665 | INFO     | job 6895383668 has finished - writing final server update
[2025-11-26 19:55:35] 2025-11-27 00:54:44,665 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 19:55:35] 2025-11-27 00:54:44,677 | INFO     | executing command: lscpu
[2025-11-26 19:55:35] 2025-11-27 00:54:44,767 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 19:55:35] 2025-11-27 00:54:45,734 | INFO     | time since job start (112430s) is within the limit (172800.0s)
[2025-11-26 19:55:35] 2025-11-27 00:54:45,950 | INFO     | monitor loop #6808: job 0:6895383668 is in state 'finished'
[2025-11-26 19:55:35] 2025-11-27 00:54:45,951 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:55:35] 2025-11-27 00:54:47,741 | INFO     | time since job start (112432s) is within the limit (172800.0s)
[2025-11-26 19:55:35] 2025-11-27 00:54:48,456 | INFO     | monitor loop #6809: job 0:6895383668 is in state 'finished'
[2025-11-26 19:55:35] 2025-11-27 00:54:48,456 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:55:35] 2025-11-27 00:54:49,748 | INFO     | time since job start (112434s) is within the limit (172800.0s)
[2025-11-26 19:55:35] 2025-11-27 00:54:50,961 | INFO     | monitor loop #6810: job 0:6895383668 is in state 'finished'
[2025-11-26 19:55:35] 2025-11-27 00:54:50,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:55:35] 2025-11-27 00:54:51,755 | INFO     | time since job start (112436s) is within the limit (172800.0s)
[2025-11-26 19:55:35] 2025-11-27 00:54:52,420 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 19:55:35] 2025-11-27 00:54:52,429 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2951.1364285714285
[2025-11-26 19:55:35] 2025-11-27 00:54:52,438 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895383668/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:55:35] 2025-11-27 00:54:52,439 | INFO     | extracted standard info from prmon json
[2025-11-26 19:55:35] 2025-11-27 00:54:52,439 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:55:35] 2025-11-27 00:54:52,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:55:35] 2025-11-27 00:54:52,466 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:55:35] 2025-11-27 00:54:52,468 | INFO     | sum of square deviations: 1937986968305.6802
[2025-11-26 19:55:35] 2025-11-27 00:54:52,525 | INFO     | sum of deviations: 8599167815780.27
[2025-11-26 19:55:35] 2025-11-27 00:54:52,526 | INFO     | mean x: 1764148694.8675354
[2025-11-26 19:55:35] 2025-11-27 00:54:52,526 | INFO     | mean y: 2950014.865906623
[2025-11-26 19:55:35] 2025-11-27 00:54:52,526 | INFO     | intersect: -7824868710.054883
[2025-11-26 19:55:35] 2025-11-27 00:54:52,528 | INFO     | chi2: 25.651103370133246
[2025-11-26 19:55:35] 2025-11-27 00:54:52,530 | INFO     | sum of square deviations: 1922251260693.733
[2025-11-26 19:55:35] 2025-11-27 00:54:52,586 | INFO     | sum of deviations: 9274935956094.824
[2025-11-26 19:55:35] 2025-11-27 00:54:52,586 | INFO     | mean x: 1764148542.3821447
[2025-11-26 19:55:35] 2025-11-27 00:54:52,586 | INFO     | mean y: 2956563.347849755
[2025-11-26 19:55:35] 2025-11-27 00:54:52,586 | INFO     | intersect: -8509127721.475204
[2025-11-26 19:55:35] 2025-11-27 00:54:52,588 | INFO     | chi2: 22.102510843686
[2025-11-26 19:55:35] 2025-11-27 00:54:52,588 | INFO     | current chi2=22.102510843686 (change=13.834073627331886 %)
[2025-11-26 19:55:35] 2025-11-27 00:54:52,588 | INFO     | right removable region: 1836
[2025-11-26 19:55:35] 2025-11-27 00:54:52,590 | INFO     | sum of square deviations: 1922245229623.7366
[2025-11-26 19:55:35] 2025-11-27 00:54:52,855 | INFO     | sum of deviations: 7891855912809.91
[2025-11-26 19:55:35] 2025-11-27 00:54:52,855 | INFO     | mean x: 1764148847.3821447
[2025-11-26 19:55:35] 2025-11-27 00:54:52,855 | INFO     | mean y: 2956866.7964071855
[2025-11-26 19:55:35] 2025-11-27 00:54:52,855 | INFO     | intersect: -7239827923.474479
[2025-11-26 19:55:35] 2025-11-27 00:54:52,857 | INFO     | chi2: 21.958803267616855
[2025-11-26 19:55:35] 2025-11-27 00:54:52,857 | INFO     | current chi2=21.958803267616855 (change=14.394312982323815 %)
[2025-11-26 19:55:35] 2025-11-27 00:54:52,857 | INFO     | left removable region: 10
[2025-11-26 19:55:35] 2025-11-27 00:54:52,859 | INFO     | sum of square deviations: 1887921075344.6702
[2025-11-26 19:55:35] 2025-11-27 00:54:52,916 | INFO     | sum of deviations: 7949931801622.284
[2025-11-26 19:55:35] 2025-11-27 00:54:52,917 | INFO     | mean x: 1764148816.9145675
[2025-11-26 19:55:35] 2025-11-27 00:54:52,917 | INFO     | mean y: 2971362.835158817
[2025-11-26 19:55:35] 2025-11-27 00:54:52,917 | INFO     | intersect: -7425762266.733008
[2025-11-26 19:55:35] 2025-11-27 00:54:52,919 | INFO     | chi2: 14.298684454347049
[2025-11-26 19:55:35] 2025-11-27 00:54:52,919 | INFO     | current memory leak: 4.21 B/s (using 1826 data points, chi2=14.30)
[2025-11-26 19:55:35] 2025-11-27 00:54:52,921 | INFO     | could have reported an average CPU frequency of 2884 MHz (65 samples)
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | ..............................
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . Timing measurements:
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . get job = 0 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . initial setup = 5 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . payload setup = 29 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . stage-in = 0 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . payload execution = 112349 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . stage-out = 6 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,922 | INFO     | . log creation = 0 s
[2025-11-26 19:55:35] 2025-11-27 00:54:52,923 | INFO     | ..............................
[2025-11-26 19:55:35] 2025-11-27 00:54:53,369 | INFO     | 
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | job summary report
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | --------------------------------------------------
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | PanDA job id: 6895383668
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | task id: 47556149
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | errors: (none)
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:55:35] 2025-11-27 00:54:53,370 | INFO     | pilot state: finished 
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | transexitcode: 0
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | exeerrorcode: 0
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | exeerrordiag: 
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | exitcode: 0
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | exitmsg: OK
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | cpuconsumptiontime: 240817 s
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | nevents: 1000
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | neventsw: 0
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | pid: 2194100
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | pgrp: 2194100
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | corecount: 8
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | event service: False
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | sizes: {0: 2283487, 1: 2284088, 2: 2284371, 3: 2284399, 14: 2284399, 18: 2284689, 25: 2284845, 112382: 2361617, 112383: 2361616, 112390: 2370666, 112393: 2370722, 
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | --------------------------------------------------
[2025-11-26 19:55:35] 2025-11-27 00:54:53,371 | INFO     | 
[2025-11-26 19:55:35] 2025-11-27 00:54:53,372 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 19:55:35] 2025-11-27 00:54:53,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:55:35] 2025-11-27 00:54:53,396 | INFO     | job 6895383668 has completed (purged errors)
[2025-11-26 19:55:35] 2025-11-27 00:54:53,397 | INFO     | overall cleanup function is called
[2025-11-26 19:55:35] 2025-11-27 00:54:54,415 | INFO     | --- collectZombieJob: --- 10, [2194100]
[2025-11-26 19:55:35] 2025-11-27 00:54:54,415 | INFO     | zombie collector waiting for pid 2194100
[2025-11-26 19:55:35] 2025-11-27 00:54:54,416 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:55:35] 2025-11-27 00:54:54,416 | INFO     | collected zombie processes
[2025-11-26 19:55:35] 2025-11-27 00:54:54,416 | INFO     | will attempt to kill all subprocesses of pid=2194100
[2025-11-26 19:55:35] 2025-11-27 00:54:54,867 | INFO     | process IDs to be killed: [2194100] (in reverse order)
[2025-11-26 19:55:35] 2025-11-27 00:54:54,959 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:55:35] 2025-11-27 00:54:54,960 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:55:35] 2025-11-27 00:54:54,970 | INFO     | did not find any defunct processes belonging to 2194100
[2025-11-26 19:55:35] 2025-11-27 00:54:54,981 | INFO     | did not find any defunct processes belonging to 2194100
[2025-11-26 19:55:35] 2025-11-27 00:54:54,983 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:55:35] 2025-11-27 00:54:54,983 | INFO     | ready for new job
[2025-11-26 19:55:35] 2025-11-27 00:54:54,984 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:55:35] 2025-11-27 00:54:54,996 | INFO     | ***************************************
[2025-11-26 19:55:35] 2025-11-27 00:54:54,996 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:55:35] 2025-11-27 00:54:54,996 | INFO     | ***************************************
[2025-11-26 19:55:35] 2025-11-27 00:54:54,996 | INFO     | 
[2025-11-26 19:55:35] 2025-11-27 00:54:55,000 | INFO     | architecture information:
[2025-11-26 19:55:35] 2025-11-27 00:54:55,000 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:55:35] 2025-11-27 00:54:55,027 | INFO     | cat /etc/os-release:
[2025-11-26 19:55:35] NAME="CentOS Linux"
[2025-11-26 19:55:35] VERSION="7 (Core)"
[2025-11-26 19:55:35] ID="centos"
[2025-11-26 19:55:35] ID_LIKE="rhel fedora"
[2025-11-26 19:55:35] VERSION_ID="7"
[2025-11-26 19:55:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:55:35] ANSI_COLOR="0;31"
[2025-11-26 19:55:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:55:35] HOME_URL="https://www.centos.org/"
[2025-11-26 19:55:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:55:35] 
[2025-11-26 19:55:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:55:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:55:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:55:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:55:35] 
[2025-11-26 19:55:35] 2025-11-27 00:54:55,027 | INFO     | ***************************************
[2025-11-26 19:55:35] 2025-11-27 00:54:55,529 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 19:55:35] 2025-11-27 00:54:55,549 | INFO     | sufficient remaining disk space (68092428288 B)
[2025-11-26 19:55:35] 2025-11-27 00:54:55,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:55:35] 2025-11-27 00:54:55,550 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:55:35] 2025-11-27 00:54:55,550 | INFO     | update_server=False
[2025-11-26 19:55:35] 2025-11-27 00:54:55,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:55:35] 2025-11-27 00:54:55,672 | INFO     | all data control threads have been joined
[2025-11-26 19:55:35] 2025-11-27 00:54:55,791 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:55:35] 2025-11-27 00:54:55,995 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:55:35] 2025-11-27 00:54:55,996 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:55:35] 2025-11-27 00:54:55,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:55:35] 2025-11-27 00:54:55,996 | INFO     | will abort loop
[2025-11-26 19:55:35] 2025-11-27 00:54:56,377 | INFO     | all payload control threads have been joined
[2025-11-26 19:55:35] 2025-11-27 00:54:56,556 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:56,559 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:56,593 | INFO     | all job control threads have been joined
[2025-11-26 19:55:35] 2025-11-27 00:54:56,678 | INFO     | [data] control thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:56,887 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,002 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,204 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,383 | INFO     | [payload] control thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,416 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,443 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,446 | INFO     | [job] validate thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,599 | INFO     | [job] control thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,618 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,732 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:57,798 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:54:58,044 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:55:35] 2025-11-27 00:54:58,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:55:35] 2025-11-27 00:54:59,053 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:55:02,614 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:55:35] 2025-11-27 00:55:25,168 | INFO     | PID=2183775 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:55:35] 2025-11-27 00:55:25,169 | INFO     | .. there are 12 such processes running
[2025-11-26 19:55:35] 2025-11-27 00:55:25,169 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:55:35] 2025-11-27 00:55:25,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:55:35] 2025-11-27 00:55:25,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:55:35] 2025-11-27 00:55:27,640 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:55:35] 2025-11-27 00:55:29,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687069341504)>', '<ExcThread(monitor, started 139686714513152)>']
[2025-11-26 19:55:35] 2025-11-27 00:55:30,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:55:35] 2025-11-27 00:55:30,203 | INFO     | [monitor] control thread has ended
[2025-11-26 19:55:35] 2025-11-27 00:55:34,714 | INFO     | all workflow threads have been joined
[2025-11-26 19:55:35] 2025-11-27 00:55:34,714 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:55:35] 2025-11-27 00:55:34,716 | INFO     | traces error code: 0
[2025-11-26 19:55:35] 2025-11-27 00:55:34,716 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:55:35] 2025-11-27 00:55:35,030 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:55:35] 2025-11-27 00:55:35,052 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:55:35] 2025-11-27 00:55:35,070 [wrapper] pilotpid: 2183775
[2025-11-26 19:55:35] 2025-11-27 00:55:35,080 [wrapper] Pilot exit status: 0
[2025-11-26 19:55:35] 2025-11-27 00:55:35,116 [wrapper] pandaids: 6895383668
[2025-11-26 19:55:35] 2025-11-27 00:55:35,210 [wrapper] cleanup supervisor_pilot  827065 2183776
[2025-11-26 19:55:35] 2025-11-27 00:55:35,214 [wrapper] Test setup, not cleaning
[2025-11-26 19:55:35] 2025-11-27 00:55:35,216 [wrapper] apfmon messages muted
[2025-11-26 19:55:35] 2025-11-27 00:55:35,219 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:55:35] 2025-11-27 00:55:35,221 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:55:35]  *** Error codes and diagnostics ***
[2025-11-26 19:55:35]     "exeErrorCode": 0,
[2025-11-26 19:55:35]     "exeErrorDiag": "",
[2025-11-26 19:55:35]     "pilotErrorCode": 0,
[2025-11-26 19:55:35]     "pilotErrorDiag": "",
[2025-11-26 19:55:35]  *** Listing of results directory ***
[2025-11-26 19:55:35] total 1340788
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:09 pilot3.tar.gz
[2025-11-26 19:55:35] -rwx------. 1 boincer umatlas     36292 Nov 23 23:39 runpilot2-wrapper.sh
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 23:39 queuedata.json
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 12:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:55:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 12:39 run_atlas
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 12:39 job.xml
[2025-11-26 19:55:35] -rw-r--r--. 2 boincer umatlas 409079696 Nov 25 12:39 EVNT.47483658._001220.pool.root.1
[2025-11-26 19:55:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:39 start_atlas.sh
[2025-11-26 19:55:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 12:39 shared
[2025-11-26 19:55:35] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 12:39 input.tar.gz
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 12:39 boinc_lockfile
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 12:39 pandaJob.out
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas        57 Nov 25 12:39 setup.sh.local
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas    991543 Nov 25 12:40 agis_schedconf.cvmfs.json
[2025-11-26 19:55:35] drwx------. 5 boincer umatlas      4096 Nov 25 12:40 pilot3
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas       534 Nov 26 18:59 boinc_task_state.xml
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 19:46 init_data.xml
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas 925932135 Nov 26 19:53 HITS.47556149._002064.pool.root.1
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas      1058 Nov 26 19:54 memory_monitor_summary.json
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:54 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas        95 Nov 26 19:54 pilot_heartbeat.json
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas   2759373 Nov 26 19:54 log.47556149._002064.job.log.tgz.1
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas      8624 Nov 26 19:54 heartbeat.json
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas        30 Nov 26 19:55 wrapper_checkpoint.txt
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas      5010 Nov 26 19:55 pilotlog.txt
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:55 boinc_mmap_file
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas  14258102 Nov 26 19:55 log.47556149._002064.job.log.1
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas       353 Nov 26 19:55 output.list
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:55 runtime_log
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas  17039360 Nov 26 19:55 result.tar.gz
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas      9354 Nov 26 19:55 runtime_log.err
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas       665 Nov 26 19:55 9oiKDm6Wdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdQLKDmZRhjPm.diag
[2025-11-26 19:55:35] -rw-r--r--. 1 boincer umatlas     21796 Nov 26 19:55 stderr.txt
[2025-11-26 19:55:35] HITS file was successfully produced:
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas 925932135 Nov 26 19:53 shared/HITS.pool.root.1
[2025-11-26 19:55:35]  *** Contents of shared directory: ***
[2025-11-26 19:55:35] total 1320968
[2025-11-26 19:55:35] -rw-r--r--. 2 boincer umatlas 409079696 Nov 25 12:39 ATLAS.root_0
[2025-11-26 19:55:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:39 start_atlas.sh
[2025-11-26 19:55:35] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 12:39 input.tar.gz
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas 925932135 Nov 26 19:53 HITS.pool.root.1
[2025-11-26 19:55:35] -rw-------. 1 boincer umatlas  17039360 Nov 26 19:55 result.tar.gz
19:55:36 (2173338): run_atlas exited; CPU time 242309.479921
19:55:36 (2173338): called boinc_finish(0)

</stderr_txt>
]]>

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