Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:13 (2177835): wrapper (7.7.26015): starting
00:03:13 (2177835): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:03:13] Arguments: --nthreads 12
[2025-11-25 00:03:13] Threads: 12
[2025-11-25 00:03:13] Checking for CVMFS
[2025-11-25 00:03:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:14] 2.13.2.0 6884 32459 244044 153270 2 484 22826104 40960001 34701 16776704 0 187856146 99.695 151462888 37762 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:03:14] CVMFS is ok
[2025-11-25 00:03:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:14] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:14] Checking for apptainer binary...
[2025-11-25 00:03:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:14] Running /usr/bin/apptainer --version
[2025-11-25 00:03:14] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:15] c-212-8.aglt2.org
[2025-11-25 00:03:15] apptainer works
[2025-11-25 00:03:15] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:03:15] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:03:15] Starting ATLAS job with PandaID=6895365863
[2025-11-25 00:03:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 00:01:27]  *** The last 200 lines of the pilot log: ***
[2025-11-26 00:01:27] 2025-11-25 21:48:41,618 | INFO     | monitor loop #3691: job 0:6895365863 is in state 'finished'
[2025-11-26 00:01:27] 2025-11-25 21:48:41,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:01:27] 2025-11-25 21:48:43,225 | INFO     | PID=2182855 has CPU usage=17.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 00:01:27] 2025-11-25 21:48:43,225 | INFO     | .. there are 40 such processes running
[2025-11-26 00:01:27] 2025-11-25 21:48:44,125 | INFO     | monitor loop #3692: job 0:6895365863 is in state 'finished'
[2025-11-26 00:01:27] 2025-11-25 21:48:44,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 00:01:27] 2025-11-25 21:48:44,225 | INFO     | time since job start (60290s) is within the limit (172800.0s)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,395 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 00:01:27] 2025-11-25 21:48:45,405 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3113.8674791666685
[2025-11-26 00:01:27] 2025-11-25 21:48:45,437 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895365863/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,438 | INFO     | extracted standard info from prmon json
[2025-11-26 00:01:27] 2025-11-25 21:48:45,438 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 00:01:27] 2025-11-25 21:48:45,438 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 00:01:27] 2025-11-25 21:48:45,503 | INFO     | fitting pss+swap vs Time
[2025-11-26 00:01:27] 2025-11-25 21:48:45,505 | INFO     | sum of square deviations: 298132970169.1188
[2025-11-26 00:01:27] 2025-11-25 21:48:45,535 | INFO     | sum of deviations: 1806206862312.0977
[2025-11-26 00:01:27] 2025-11-25 21:48:45,535 | INFO     | mean x: 1764077222.5987842
[2025-11-26 00:01:27] 2025-11-25 21:48:45,535 | INFO     | mean y: 3471167.747720365
[2025-11-26 00:01:27] 2025-11-25 21:48:45,535 | INFO     | intersect: -10684002892.2294
[2025-11-26 00:01:27] 2025-11-25 21:48:45,536 | INFO     | chi2: 14.076070582943622
[2025-11-26 00:01:27] 2025-11-25 21:48:45,537 | INFO     | sum of square deviations: 293625264593.7734
[2025-11-26 00:01:27] 2025-11-25 21:48:45,555 | INFO     | sum of deviations: 2224702077088.769
[2025-11-26 00:01:27] 2025-11-25 21:48:45,555 | INFO     | mean x: 1764077070.1069245
[2025-11-26 00:01:27] 2025-11-25 21:48:45,555 | INFO     | mean y: 3485323.9450101834
[2025-11-26 00:01:27] 2025-11-25 21:48:45,555 | INFO     | intersect: -13362346555.137678
[2025-11-26 00:01:27] 2025-11-25 21:48:45,556 | INFO     | chi2: 10.596424825295435
[2025-11-26 00:01:27] 2025-11-25 21:48:45,556 | INFO     | current chi2=10.596424825295435 (change=24.720292052702362 %)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,556 | INFO     | right removable region: 981
[2025-11-26 00:01:27] 2025-11-25 21:48:45,557 | INFO     | sum of square deviations: 293624302013.7733
[2025-11-26 00:01:27] 2025-11-25 21:48:45,576 | INFO     | sum of deviations: 1312284300289.4087
[2025-11-26 00:01:27] 2025-11-25 21:48:45,576 | INFO     | mean x: 1764077375.1069245
[2025-11-26 00:01:27] 2025-11-25 21:48:45,576 | INFO     | mean y: 3487872.7484725052
[2025-11-26 00:01:27] 2025-11-25 21:48:45,576 | INFO     | intersect: -7880638297.911531
[2025-11-26 00:01:27] 2025-11-25 21:48:45,577 | INFO     | chi2: 9.660874290492135
[2025-11-26 00:01:27] 2025-11-25 21:48:45,577 | INFO     | current chi2=9.660874290492135 (change=31.36668196166554 %)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,578 | INFO     | sum of square deviations: 289161608038.4218
[2025-11-26 00:01:27] 2025-11-25 21:48:45,595 | INFO     | sum of deviations: 1110663187257.9932
[2025-11-26 00:01:27] 2025-11-25 21:48:45,595 | INFO     | mean x: 1764077527.6100307
[2025-11-26 00:01:27] 2025-11-25 21:48:45,595 | INFO     | mean y: 3494751.837256909
[2025-11-26 00:01:27] 2025-11-25 21:48:45,595 | INFO     | intersect: -6772287077.14337
[2025-11-26 00:01:27] 2025-11-25 21:48:45,596 | INFO     | chi2: 8.763404649028088
[2025-11-26 00:01:27] 2025-11-25 21:48:45,596 | INFO     | current chi2=8.763404649028088 (change=9.289735219381777 %)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,596 | INFO     | left removable region: 20
[2025-11-26 00:01:27] 2025-11-25 21:48:45,597 | INFO     | sum of square deviations: 275186008428.8884
[2025-11-26 00:01:27] 2025-11-25 21:48:45,613 | INFO     | sum of deviations: 1473810754577.81
[2025-11-26 00:01:27] 2025-11-25 21:48:45,613 | INFO     | mean x: 1764077649.6264307
[2025-11-26 00:01:27] 2025-11-25 21:48:45,613 | INFO     | mean y: 3518058.227887617
[2025-11-26 00:01:27] 2025-11-25 21:48:45,613 | INFO     | intersect: -9444333694.022923
[2025-11-26 00:01:27] 2025-11-25 21:48:45,614 | INFO     | chi2: 4.166243551001589
[2025-11-26 00:01:27] 2025-11-25 21:48:45,614 | INFO     | current memory leak: 5.36 B/s (using 961 data points, chi2=4.17)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,615 | INFO     | could have reported an average CPU frequency of 3063 MHz (37 samples)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,615 | INFO     | ..............................
[2025-11-26 00:01:27] 2025-11-25 21:48:45,615 | INFO     | . Timing measurements:
[2025-11-26 00:01:27] 2025-11-25 21:48:45,615 | INFO     | . get job = 0 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | . initial setup = 4 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | . payload setup = 35 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | . stage-in = 0 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | . payload execution = 60184 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | . stage-out = 5 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | . log creation = 2 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,616 | INFO     | ..............................
[2025-11-26 00:01:27] 2025-11-25 21:48:45,697 | INFO     | 
[2025-11-26 00:01:27] 2025-11-25 21:48:45,697 | INFO     | job summary report
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | --------------------------------------------------
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | PanDA job id: 6895365863
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | task id: 47556137
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | errors: (none)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | pilot state: finished 
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | transexitcode: 0
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | exeerrorcode: 0
[2025-11-26 00:01:27] 2025-11-25 21:48:45,698 | INFO     | exeerrordiag: 
[2025-11-26 00:01:27] 2025-11-25 21:48:45,723 | INFO     | exitcode: 0
[2025-11-26 00:01:27] 2025-11-25 21:48:45,723 | INFO     | exitmsg: OK
[2025-11-26 00:01:27] 2025-11-25 21:48:45,723 | INFO     | cpuconsumptiontime: 210702 s
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | nevents: 1000
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | neventsw: 0
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | pid: 2206233
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | pgrp: 2206233
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | corecount: 12
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | event service: False
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | sizes: {0: 2284138, 1: 2284337, 12: 2284337, 18: 2284627, 24: 2284655, 60221: 2337748, 60227: 2346747, 60230: 2346803, 60239: 2347049}
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | --------------------------------------------------
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | 
[2025-11-26 00:01:27] 2025-11-25 21:48:45,724 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 00:01:27] 2025-11-25 21:48:45,794 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,794 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,795 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,795 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,795 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,795 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,795 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | job 6895365863 has completed (purged errors)
[2025-11-26 00:01:27] 2025-11-25 21:48:45,796 | INFO     | overall cleanup function is called
[2025-11-26 00:01:27] 2025-11-25 21:48:46,825 | INFO     | --- collectZombieJob: --- 10, [2206233]
[2025-11-26 00:01:27] 2025-11-25 21:48:46,825 | INFO     | zombie collector waiting for pid 2206233
[2025-11-26 00:01:27] 2025-11-25 21:48:46,826 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 00:01:27] 2025-11-25 21:48:46,826 | INFO     | collected zombie processes
[2025-11-26 00:01:27] 2025-11-25 21:48:46,826 | INFO     | will attempt to kill all subprocesses of pid=2206233
[2025-11-26 00:01:27] 2025-11-25 21:48:47,865 | INFO     | process IDs to be killed: [2206233] (in reverse order)
[2025-11-26 00:01:27] 2025-11-25 21:48:48,207 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 00:01:27] 2025-11-25 21:48:48,207 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 00:01:27] 2025-11-25 21:48:48,284 | INFO     | did not find any defunct processes belonging to 2206233
[2025-11-26 00:01:27] 2025-11-25 21:48:48,304 | INFO     | did not find any defunct processes belonging to 2206233
[2025-11-26 00:01:27] 2025-11-25 21:48:48,309 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 00:01:27] 2025-11-25 21:48:48,309 | INFO     | ready for new job
[2025-11-26 00:01:27] 2025-11-25 21:48:48,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 00:01:27] 2025-11-25 21:48:48,317 | INFO     | ***************************************
[2025-11-26 00:01:27] 2025-11-25 21:48:48,317 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 00:01:27] 2025-11-25 21:48:48,317 | INFO     | ***************************************
[2025-11-26 00:01:27] 2025-11-25 21:48:48,317 | INFO     | 
[2025-11-26 00:01:27] 2025-11-25 21:48:48,335 | INFO     | architecture information:
[2025-11-26 00:01:27] 2025-11-25 21:48:48,347 | INFO     | executing command: cat /etc/os-release
[2025-11-26 00:01:27] 2025-11-25 21:48:48,473 | INFO     | cat /etc/os-release:
[2025-11-26 00:01:27] NAME="CentOS Linux"
[2025-11-26 00:01:27] VERSION="7 (Core)"
[2025-11-26 00:01:27] ID="centos"
[2025-11-26 00:01:27] ID_LIKE="rhel fedora"
[2025-11-26 00:01:27] VERSION_ID="7"
[2025-11-26 00:01:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 00:01:27] ANSI_COLOR="0;31"
[2025-11-26 00:01:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 00:01:27] HOME_URL="https://www.centos.org/"
[2025-11-26 00:01:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 00:01:27] 
[2025-11-26 00:01:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 00:01:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 00:01:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 00:01:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 00:01:27] 
[2025-11-26 00:01:27] 2025-11-25 21:48:48,473 | INFO     | ***************************************
[2025-11-26 00:01:27] 2025-11-25 21:48:48,976 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 00:01:27] 2025-11-25 21:48:49,038 | INFO     | sufficient remaining disk space (120641814528 B)
[2025-11-26 00:01:27] 2025-11-25 21:48:49,038 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 00:01:27] 2025-11-25 21:48:49,038 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 00:01:27] 2025-11-25 21:48:49,038 | INFO     | update_server=False
[2025-11-26 00:01:27] 2025-11-25 21:48:49,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 00:01:27] 2025-11-25 21:48:49,142 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 00:01:27] 2025-11-25 21:48:49,142 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 00:01:27] 2025-11-25 21:48:49,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:01:27] 2025-11-25 21:48:49,143 | INFO     | will abort loop
[2025-11-26 00:01:27] 2025-11-25 21:48:49,705 | INFO     | all data control threads have been joined
[2025-11-26 00:01:27] 2025-11-25 21:48:49,735 | INFO     | all job control threads have been joined
[2025-11-26 00:01:27] 2025-11-25 21:48:50,044 | INFO     | [job] retrieve thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 00:01:27] 2025-11-25 21:48:50,148 | INFO     | [job] job monitor thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,168 | INFO     | [payload] failed_post thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,194 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,276 | INFO     | [payload] validate_post thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,421 | INFO     | all payload control threads have been joined
[2025-11-26 00:01:27] 2025-11-25 21:48:50,713 | INFO     | [data] control thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,730 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 00:01:27] 2025-11-25 21:48:50,762 | INFO     | [job] control thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:50,783 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:51,042 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:51,312 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:51,320 | INFO     | [job] validate thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:51,426 | INFO     | [payload] control thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:51,545 | INFO     | [data] copytool_in thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:51,740 | INFO     | [job] queue monitor thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:52,099 | INFO     | [data] copytool_out thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:48:52,134 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 00:01:27] 2025-11-25 21:48:55,676 [wrapper] supervise_pilot (15 min periods counter: 68)
[2025-11-26 00:01:27] 2025-11-25 21:48:56,142 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 00:01:27] 2025-11-25 21:49:17,942 | INFO     | PID=2182855 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 00:01:27] 2025-11-25 21:49:17,942 | INFO     | .. there are 40 such processes running
[2025-11-26 00:01:27] 2025-11-25 21:49:17,943 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 00:01:27] 2025-11-25 21:49:17,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 00:01:27] 2025-11-25 21:49:17,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 00:01:27] 2025-11-25 21:49:41,010 | INFO     | [monitor] cgroup control has ended
[2025-11-26 00:01:27] 2025-11-25 21:49:42,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140626959910720)>', '<ExcThread(monitor, started 140626439935744)>']
[2025-11-26 00:01:27] 2025-11-25 21:49:42,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 00:01:27] 2025-11-25 21:49:42,098 | INFO     | [monitor] control thread has ended
[2025-11-26 00:01:27] 2025-11-25 21:49:47,055 | INFO     | all workflow threads have been joined
[2025-11-26 00:01:27] 2025-11-25 21:49:47,055 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 00:01:27] 2025-11-25 21:49:47,056 | INFO     | traces error code: 0
[2025-11-26 00:01:27] 2025-11-25 21:49:47,056 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 00:01:27] 2025-11-25 21:49:47,299 [wrapper] ==== pilot stdout END ====
[2025-11-26 00:01:27] 2025-11-25 21:49:47,303 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 00:01:27] 2025-11-25 21:49:47,309 [wrapper] pilotpid: 2182855
[2025-11-26 00:01:27] 2025-11-25 21:49:47,312 [wrapper] Pilot exit status: 0
[2025-11-26 00:01:27] 2025-11-25 21:49:47,330 [wrapper] pandaids: 6895365863
[2025-11-26 00:01:27] 2025-11-25 21:49:47,477 [wrapper] cleanup supervisor_pilot 2207672 2182856
[2025-11-26 00:01:27] 2025-11-25 21:49:47,493 [wrapper] Test setup, not cleaning
[2025-11-26 00:01:27] 2025-11-25 21:49:47,498 [wrapper] apfmon messages muted
[2025-11-26 00:01:27] 2025-11-25 21:49:47,504 [wrapper] ==== wrapper stdout END ====
[2025-11-26 00:01:27] 2025-11-25 21:49:47,514 [wrapper] ==== wrapper stderr END ====
[2025-11-26 00:01:27]  *** Error codes and diagnostics ***
[2025-11-26 00:01:27]     "exeErrorCode": 0,
[2025-11-26 00:01:27]     "exeErrorDiag": "",
[2025-11-26 00:01:27]     "pilotErrorCode": 0,
[2025-11-26 00:01:27]     "pilotErrorDiag": "",
[2025-11-26 00:01:27]  *** Listing of results directory ***
[2025-11-26 00:01:27] total 1320228
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-26 00:01:27] -rwx------. 1 boincer umatlas     36292 Nov 23 13:04 runpilot2-wrapper.sh
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 13:04 queuedata.json
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 00:01:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:03 run_atlas
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:03 job.xml
[2025-11-26 00:01:27] -rw-r--r--. 2 boincer umatlas 409469479 Nov 25 00:03 EVNT.47483658._000836.pool.root.1
[2025-11-26 00:01:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 00:01:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-26 00:01:27] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:03 input.tar.gz
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:03 pandaJob.out
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-26 00:01:27] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas       531 Nov 25 16:26 boinc_task_state.xml
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas 918010399 Nov 25 16:47 HITS.47556137._008226.pool.root.1
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas      1072 Nov 25 16:48 memory_monitor_summary.json
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas   1516240 Nov 25 16:48 agis_ddmendpoints.agis.ALL.json
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas   2556462 Nov 25 16:48 log.47556137._008226.job.log.tgz.1
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas      8629 Nov 25 16:48 heartbeat.json
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas        95 Nov 25 16:49 pilot_heartbeat.json
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas      5011 Nov 25 16:49 pilotlog.txt
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas   7696590 Nov 25 16:49 log.47556137._008226.job.log.1
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas       353 Nov 25 16:49 output.list
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas       620 Nov 25 16:49 runtime_log
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas  10270720 Nov 25 16:49 result.tar.gz
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas      9340 Nov 25 16:49 runtime_log.err
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas       666 Nov 25 16:49 9X7KDm7cTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmg5KKDm3aquDo.diag
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas      6950 Nov 26 00:01 init_data.xml
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 00:01 boinc_mmap_file
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas        28 Nov 26 00:01 wrapper_checkpoint.txt
[2025-11-26 00:01:27] -rw-r--r--. 1 boincer umatlas     21603 Nov 26 00:01 stderr.txt
[2025-11-26 00:01:27] HITS file was successfully produced:
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas 918010399 Nov 25 16:47 shared/HITS.pool.root.1
[2025-11-26 00:01:27]  *** Contents of shared directory: ***
[2025-11-26 00:01:27] total 1307008
[2025-11-26 00:01:27] -rw-r--r--. 2 boincer umatlas 409469479 Nov 25 00:03 ATLAS.root_0
[2025-11-26 00:01:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 00:01:27] -rw-r--r--. 2 boincer umatlas    590097 Nov 25 00:03 input.tar.gz
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas 918010399 Nov 25 16:47 HITS.pool.root.1
[2025-11-26 00:01:27] -rw-------. 1 boincer umatlas  10270720 Nov 25 16:49 result.tar.gz
00:01:29 (2177835): run_atlas exited; CPU time 209930.054799
00:01:29 (2177835): called boinc_finish(0)

</stderr_txt>
]]>

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