Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:33:00 (27410): wrapper (7.7.26015): starting
14:33:00 (27410): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 14:33:00] Arguments: --nthreads 8
[2025-11-27 14:33:00] Threads: 8
[2025-11-27 14:33:00] Checking for CVMFS
[2025-11-27 14:33:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 14:33:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 14:33:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 14:33:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 14:33:03] 2.11.2.0 12124 212736 140980 153364 0 85 23907224 25165824 1288 130560 34 86675954 99.883 39237791 2548 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 14:33:03] CVMFS is ok
[2025-11-27 14:33:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 14:33:03] Checking for apptainer binary...
[2025-11-27 14:33:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 14:33:03] Running /usr/bin/apptainer --version
[2025-11-27 14:33:03] apptainer version 1.3.2-1.el7
[2025-11-27 14:33:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 14:33:34] cg-vwn300.simple-grid.lan
[2025-11-27 14:33:34] apptainer works
[2025-11-27 14:33:34] Set ATHENA_PROC_NUMBER=8
[2025-11-27 14:33:34] Set ATHENA_CORE_NUMBER=8
[2025-11-27 14:33:34] Starting ATLAS job with PandaID=6895355695
[2025-11-27 14:33:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 14:02:52]  *** The last 200 lines of the pilot log: ***
[2025-11-28 14:02:52] 2025-11-28 13:01:53,930 | INFO     | sum of deviations: 4163342496224.302
[2025-11-28 14:02:52] 2025-11-28 13:01:53,931 | INFO     | mean x: 1764293003.0750182
[2025-11-28 14:02:52] 2025-11-28 13:01:53,931 | INFO     | mean y: 2862411.793153678
[2025-11-28 14:02:52] 2025-11-28 13:01:53,931 | INFO     | intersect: -9149281197.94402
[2025-11-28 14:02:52] 2025-11-28 13:01:53,932 | INFO     | chi2: 15.115928764413281
[2025-11-28 14:02:52] 2025-11-28 13:01:53,934 | INFO     | sum of square deviations: 793847264363.4739
[2025-11-28 14:02:52] 2025-11-28 13:01:53,993 | INFO     | sum of deviations: 4636680020591.364
[2025-11-28 14:02:52] 2025-11-28 13:01:53,993 | INFO     | mean x: 1764292850.5789473
[2025-11-28 14:02:52] 2025-11-28 13:01:53,994 | INFO     | mean y: 2870674.2141812867
[2025-11-28 14:02:52] 2025-11-28 13:01:53,994 | INFO     | intersect: -10301959710.646921
[2025-11-28 14:02:52] 2025-11-28 13:01:53,995 | INFO     | chi2: 11.85035622172602
[2025-11-28 14:02:52] 2025-11-28 13:01:53,995 | INFO     | current chi2=11.85035622172602 (change=21.603519000269735 %)
[2025-11-28 14:02:52] 2025-11-28 13:01:53,995 | INFO     | right removable region: 1367
[2025-11-28 14:02:52] 2025-11-28 13:01:53,997 | INFO     | sum of square deviations: 793846364003.474
[2025-11-28 14:02:52] 2025-11-28 13:01:54,061 | INFO     | sum of deviations: 3585707082414.734
[2025-11-28 14:02:52] 2025-11-28 13:01:54,062 | INFO     | mean x: 1764293155.5789473
[2025-11-28 14:02:52] 2025-11-28 13:01:54,062 | INFO     | mean y: 2872493.8728070175
[2025-11-28 14:02:52] 2025-11-28 13:01:54,062 | INFO     | intersect: -7966224236.017344
[2025-11-28 14:02:52] 2025-11-28 13:01:54,064 | INFO     | chi2: 10.375031812895934
[2025-11-28 14:02:52] 2025-11-28 13:01:54,064 | INFO     | current chi2=10.375031812895934 (change=31.3635835773361 %)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,066 | INFO     | sum of square deviations: 785173230277.6324
[2025-11-28 14:02:52] 2025-11-28 13:01:54,119 | INFO     | sum of deviations: 3085871704004.169
[2025-11-28 14:02:52] 2025-11-28 13:01:54,119 | INFO     | mean x: 1764293308.0829053
[2025-11-28 14:02:52] 2025-11-28 13:01:54,119 | INFO     | mean y: 2881282.290535583
[2025-11-28 14:02:52] 2025-11-28 13:01:54,120 | INFO     | intersect: -6931108042.653523
[2025-11-28 14:02:52] 2025-11-28 13:01:54,121 | INFO     | chi2: 6.946918328373477
[2025-11-28 14:02:52] 2025-11-28 13:01:54,121 | INFO     | current chi2=6.946918328373477 (change=33.04195636548688 %)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,123 | INFO     | sum of square deviations: 776563575989.4193
[2025-11-28 14:02:52] 2025-11-28 13:01:54,179 | INFO     | sum of deviations: 2740431310740.138
[2025-11-28 14:02:52] 2025-11-28 13:01:54,180 | INFO     | mean x: 1764293460.5861561
[2025-11-28 14:02:52] 2025-11-28 13:01:54,180 | INFO     | mean y: 2887396.443298969
[2025-11-28 14:02:52] 2025-11-28 13:01:54,180 | INFO     | intersect: -6223164391.479149
[2025-11-28 14:02:52] 2025-11-28 13:01:54,182 | INFO     | chi2: 5.175914295872734
[2025-11-28 14:02:52] 2025-11-28 13:01:54,182 | INFO     | current chi2=5.175914295872734 (change=25.49337632583625 %)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,184 | INFO     | sum of square deviations: 768017500114.055
[2025-11-28 14:02:52] 2025-11-28 13:01:54,236 | INFO     | sum of deviations: 2646594682380.9844
[2025-11-28 14:02:52] 2025-11-28 13:01:54,236 | INFO     | mean x: 1764293613.0857353
[2025-11-28 14:02:52] 2025-11-28 13:01:54,236 | INFO     | mean y: 2889070.672579453
[2025-11-28 14:02:52] 2025-11-28 13:01:54,236 | INFO     | intersect: -6076881369.269235
[2025-11-28 14:02:52] 2025-11-28 13:01:54,238 | INFO     | chi2: 5.119778607638257
[2025-11-28 14:02:52] 2025-11-28 13:01:54,238 | INFO     | current chi2=5.119778607638257 (change=1.084555984229478 %)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,238 | INFO     | left removable region: 40
[2025-11-28 14:02:52] 2025-11-28 13:01:54,240 | INFO     | sum of square deviations: 724587337423.967
[2025-11-28 14:02:52] 2025-11-28 13:01:54,293 | INFO     | sum of deviations: 2939822386244.2134
[2025-11-28 14:02:52] 2025-11-28 13:01:54,293 | INFO     | mean x: 1764294040.0911832
[2025-11-28 14:02:52] 2025-11-28 13:01:54,293 | INFO     | mean y: 2904847.6510926904
[2025-11-28 14:02:52] 2025-11-28 13:01:54,294 | INFO     | intersect: -7155253799.472053
[2025-11-28 14:02:52] 2025-11-28 13:01:54,295 | INFO     | chi2: 0.8152528430471595
[2025-11-28 14:02:52] 2025-11-28 13:01:54,295 | INFO     | current memory leak: 4.06 B/s (using 1327 data points, chi2=0.82)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | could have reported an average CPU frequency of 1999 MHz (47 samples)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | ..............................
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . Timing measurements:
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . get job = 0 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . initial setup = 9 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . payload setup = 170 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . stage-in = 0 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . payload execution = 83879 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . stage-out = 3 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,297 | INFO     | . log creation = 1 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,298 | INFO     | ..............................
[2025-11-28 14:02:52] 2025-11-28 13:01:54,706 | INFO     | 
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | job summary report
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | --------------------------------------------------
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | PanDA job id: 6895355695
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | task id: 47556137
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | errors: (none)
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | pilot state: finished 
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | transexitcode: 0
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | exeerrorcode: 0
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | exeerrordiag: 
[2025-11-28 14:02:52] 2025-11-28 13:01:54,707 | INFO     | exitcode: 0
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | exitmsg: OK
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | cpuconsumptiontime: 319230 s
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | nevents: 1000
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | neventsw: 0
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | pid: 5383
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | pgrp: 5383
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | corecount: 8
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | event service: False
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | sizes: {0: 2283486, 1: 2284087, 2: 2284370, 3: 2284370, 14: 2284398, 24: 2284426, 35: 2284582, 46: 2284610, 57: 2284638, 67: 2284666, 78: 2284694, 89: 2285030, 94:
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | --------------------------------------------------
[2025-11-28 14:02:52] 2025-11-28 13:01:54,708 | INFO     | 
[2025-11-28 14:02:52] 2025-11-28 13:01:54,709 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-11-28 14:02:52] 2025-11-28 13:01:55,232 | INFO     | time since job start (84277s) is within the limit (172800.0s)
[2025-11-28 14:02:52] 2025-11-28 13:01:55,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | job 6895355695 has completed (purged errors)
[2025-11-28 14:02:52] 2025-11-28 13:01:55,253 | INFO     | overall cleanup function is called
[2025-11-28 14:02:52] 2025-11-28 13:01:56,268 | INFO     | --- collectZombieJob: --- 10, [5383]
[2025-11-28 14:02:52] 2025-11-28 13:01:56,269 | INFO     | zombie collector waiting for pid 5383
[2025-11-28 14:02:52] 2025-11-28 13:01:56,269 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 14:02:52] 2025-11-28 13:01:56,269 | INFO     | collected zombie processes
[2025-11-28 14:02:52] 2025-11-28 13:01:56,269 | INFO     | will attempt to kill all subprocesses of pid=5383
[2025-11-28 14:02:52] 2025-11-28 13:01:56,378 | INFO     | process IDs to be killed: [5383] (in reverse order)
[2025-11-28 14:02:52] 2025-11-28 13:01:57,175 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 14:02:52] 2025-11-28 13:01:57,175 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 14:02:52] 2025-11-28 13:01:57,179 | INFO     | did not find any defunct processes belonging to 5383
[2025-11-28 14:02:52] 2025-11-28 13:01:57,182 | INFO     | did not find any defunct processes belonging to 5383
[2025-11-28 14:02:52] 2025-11-28 13:01:57,239 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 14:02:52] 2025-11-28 13:01:57,239 | INFO     | ready for new job
[2025-11-28 14:02:52] 2025-11-28 13:01:57,239 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 14:02:52] 2025-11-28 13:01:57,244 | INFO     | ***************************************
[2025-11-28 14:02:52] 2025-11-28 13:01:57,244 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 14:02:52] 2025-11-28 13:01:57,245 | INFO     | ***************************************
[2025-11-28 14:02:52] 2025-11-28 13:01:57,245 | INFO     | 
[2025-11-28 14:02:52] 2025-11-28 13:01:57,245 | INFO     | pilot is running in a VM
[2025-11-28 14:02:52] 2025-11-28 13:01:57,245 | INFO     | architecture information:
[2025-11-28 14:02:52] 2025-11-28 13:01:57,264 | INFO     | executing command: cat /etc/os-release
[2025-11-28 14:02:52] 2025-11-28 13:01:57,451 | INFO     | cat /etc/os-release:
[2025-11-28 14:02:52] NAME="CentOS Linux"
[2025-11-28 14:02:52] VERSION="7 (Core)"
[2025-11-28 14:02:52] ID="centos"
[2025-11-28 14:02:52] ID_LIKE="rhel fedora"
[2025-11-28 14:02:52] VERSION_ID="7"
[2025-11-28 14:02:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 14:02:52] ANSI_COLOR="0;31"
[2025-11-28 14:02:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 14:02:52] HOME_URL="https://www.centos.org/"
[2025-11-28 14:02:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 14:02:52] 
[2025-11-28 14:02:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 14:02:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 14:02:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 14:02:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 14:02:52] 
[2025-11-28 14:02:52] 2025-11-28 13:01:57,451 | INFO     | ***************************************
[2025-11-28 14:02:52] 2025-11-28 13:01:57,955 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-11-28 14:02:52] 2025-11-28 13:01:58,079 | INFO     | sufficient remaining disk space (495382953984 B)
[2025-11-28 14:02:52] 2025-11-28 13:01:58,080 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 14:02:52] 2025-11-28 13:01:58,080 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 14:02:52] 2025-11-28 13:01:58,080 | INFO     | update_server=False
[2025-11-28 14:02:52] 2025-11-28 13:01:58,080 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 14:02:52] 2025-11-28 13:01:58,527 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-28 14:02:52] 2025-11-28 13:01:58,528 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-28 14:02:52] 2025-11-28 13:01:58,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:02:52] 2025-11-28 13:01:58,528 | INFO     | will abort loop
[2025-11-28 14:02:52] 2025-11-28 13:01:58,650 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 14:02:52] 2025-11-28 13:01:58,830 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 14:02:52] 2025-11-28 13:01:58,834 | INFO     | all payload control threads have been joined
[2025-11-28 14:02:52] 2025-11-28 13:01:59,086 | INFO     | [job] retrieve thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,106 | INFO     | all data control threads have been joined
[2025-11-28 14:02:52] 2025-11-28 13:01:59,185 | INFO     | [job] validate thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,319 | INFO     | all job control threads have been joined
[2025-11-28 14:02:52] 2025-11-28 13:01:59,415 | INFO     | [payload] failed_post thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,415 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 14:02:52] 2025-11-28 13:01:59,533 | INFO     | [job] job monitor thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,540 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,662 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,840 | INFO     | [payload] control thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:01:59,872 | INFO     | [data] copytool_in thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,112 | INFO     | [data] control thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,178 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,201 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,286 | INFO     | [payload] validate_post thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,325 | INFO     | [job] control thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,421 | INFO     | [job] queue monitor thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:00,657 | INFO     | [data] copytool_out thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:02,839 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 14:02:52] 2025-11-28 13:02:28,412 | INFO     | PID=31235 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 14:02:52] 2025-11-28 13:02:28,412 | INFO     | .. there are 9 such processes running
[2025-11-28 14:02:52] 2025-11-28 13:02:28,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 14:02:52] 2025-11-28 13:02:28,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 14:02:52] 2025-11-28 13:02:28,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 14:02:52] 2025-11-28 13:02:45,016 | INFO     | [monitor] cgroup control has ended
[2025-11-28 14:02:52] 2025-11-28 13:02:46,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139643169646400)>', '<ExcThread(monitor, started 139642582058752)>']
[2025-11-28 14:02:52] 2025-11-28 13:02:46,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 14:02:52] 2025-11-28 13:02:46,520 | INFO     | [monitor] control thread has ended
[2025-11-28 14:02:52] 2025-11-28 13:02:51,473 | INFO     | all workflow threads have been joined
[2025-11-28 14:02:52] 2025-11-28 13:02:51,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 14:02:52] 2025-11-28 13:02:51,474 | INFO     | traces error code: 0
[2025-11-28 14:02:52] 2025-11-28 13:02:51,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 14:02:52] 2025-11-28 13:02:51,692 [wrapper] ==== pilot stdout END ====
[2025-11-28 14:02:52] 2025-11-28 13:02:51,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 14:02:52] 2025-11-28 13:02:51,709 [wrapper] pilotpid: 31235
[2025-11-28 14:02:52] 2025-11-28 13:02:51,714 [wrapper] Pilot exit status: 0
[2025-11-28 14:02:52] 2025-11-28 13:02:51,746 [wrapper] pandaids: 6895355695
[2025-11-28 14:02:52] 2025-11-28 13:02:51,804 [wrapper] cleanup supervisor_pilot  8720 31236
[2025-11-28 14:02:52] 2025-11-28 13:02:51,828 [wrapper] Test setup, not cleaning
[2025-11-28 14:02:52] 2025-11-28 13:02:51,831 [wrapper] apfmon messages muted
[2025-11-28 14:02:52] 2025-11-28 13:02:51,834 [wrapper] ==== wrapper stdout END ====
[2025-11-28 14:02:52] 2025-11-28 13:02:51,837 [wrapper] ==== wrapper stderr END ====
[2025-11-28 14:02:52]  *** Error codes and diagnostics ***
[2025-11-28 14:02:52]     "exeErrorCode": 0,
[2025-11-28 14:02:52]     "exeErrorDiag": "",
[2025-11-28 14:02:52]     "pilotErrorCode": 0,
[2025-11-28 14:02:52]     "pilotErrorDiag": "",
[2025-11-28 14:02:52]  *** Listing of results directory ***
[2025-11-28 14:02:52] total 1342324
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc    576529 Nov 23 09:03 pilot3.tar.gz
[2025-11-28 14:02:52] -rwx------. 1 boinc boinc     36292 Nov 23 09:19 runpilot2-wrapper.sh
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc      5112 Nov 23 09:19 queuedata.json
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc       100 Nov 27 14:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 14:02:52] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 14:33 run_atlas
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc       105 Nov 27 14:33 job.xml
[2025-11-28 14:02:52] -rw-r--r--. 2 boinc boinc 411159915 Nov 27 14:33 EVNT.47483658._000670.pool.root.1
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc      6391 Nov 27 14:33 init_data.xml
[2025-11-28 14:02:52] -rw-r--r--. 2 boinc boinc     15847 Nov 27 14:33 start_atlas.sh
[2025-11-28 14:02:52] drwxrwx--x. 2 boinc boinc        68 Nov 27 14:33 shared
[2025-11-28 14:02:52] -rw-r--r--. 2 boinc boinc    590094 Nov 27 14:33 input.tar.gz
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc         0 Nov 27 14:33 boinc_lockfile
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc      2785 Nov 27 14:33 pandaJob.out
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc    991566 Nov 27 14:37 agis_schedconf.cvmfs.json
[2025-11-28 14:02:52] drwx------. 5 boinc boinc      4096 Nov 27 14:37 pilot3
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc       533 Nov 28 13:48 boinc_task_state.xml
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc 932149129 Nov 28 14:00 HITS.47556137._006658.pool.root.1
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc      1031 Nov 28 14:01 memory_monitor_summary.json
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc   1516240 Nov 28 14:01 agis_ddmendpoints.agis.ALL.json
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc   2449053 Nov 28 14:01 log.47556137._006658.job.log.tgz.1
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc        95 Nov 28 14:01 pilot_heartbeat.json
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc      8622 Nov 28 14:01 heartbeat.json
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc      5070 Nov 28 14:02 pilotlog.txt
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc  11215355 Nov 28 14:02 log.47556137._006658.job.log.1
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc      8192 Nov 28 14:02 boinc_mmap_file
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc       353 Nov 28 14:02 output.list
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc       620 Nov 28 14:02 runtime_log
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc  13680640 Nov 28 14:02 result.tar.gz
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc      8817 Nov 28 14:02 runtime_log.err
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc       662 Nov 28 14:02 EJiMDmdUKh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVkKKDmzte1Mo.diag
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc     20874 Nov 28 14:02 stderr.txt
[2025-11-28 14:02:52] -rw-r--r--. 1 boinc boinc        29 Nov 28 14:02 wrapper_checkpoint.txt
[2025-11-28 14:02:52] HITS file was successfully produced:
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc 932149129 Nov 28 14:00 shared/HITS.pool.root.1
[2025-11-28 14:02:52]  *** Contents of shared directory: ***
[2025-11-28 14:02:52] total 1325784
[2025-11-28 14:02:52] -rw-r--r--. 2 boinc boinc 411159915 Nov 27 14:33 ATLAS.root_0
[2025-11-28 14:02:52] -rw-r--r--. 2 boinc boinc     15847 Nov 27 14:33 start_atlas.sh
[2025-11-28 14:02:52] -rw-r--r--. 2 boinc boinc    590094 Nov 27 14:33 input.tar.gz
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc 932149129 Nov 28 14:00 HITS.pool.root.1
[2025-11-28 14:02:52] -rw-------. 1 boinc boinc  13680640 Nov 28 14:02 result.tar.gz
14:02:54 (27410): run_atlas exited; CPU time 319791.262218
14:02:54 (27410): called boinc_finish(0)

</stderr_txt>
]]>

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