Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
20:22:25 (550709): wrapper (7.7.26015): starting
20:22:25 (550709): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 20:22:25] Arguments: --nthreads 10
[2025-11-26 20:22:25] Threads: 10
[2025-11-26 20:22:25] Checking for CVMFS
[2025-11-26 20:22:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:22:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:22:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:22:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:22:26] 2.13.3.0 7351 12287 50224 153347 0 56 3399303 4096000 10759 130560 0 37924147 99.984 741070 778 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-26 20:22:26] CVMFS is ok
[2025-11-26 20:22:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:22:26] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-26 20:22:26] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-26 20:22:26] Further information can be found at the LHC@home message board.
[2025-11-26 20:22:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:22:26] Checking for apptainer binary...
[2025-11-26 20:22:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:22:26] Running /usr/bin/apptainer --version
[2025-11-26 20:22:26] apptainer version 1.4.2
[2025-11-26 20:22:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:22:27] 3950x-linux
[2025-11-26 20:22:27] apptainer works
[2025-11-26 20:22:27] Set ATHENA_PROC_NUMBER=10
[2025-11-26 20:22:27] Set ATHENA_CORE_NUMBER=10
[2025-11-26 20:22:27] Starting ATLAS job with PandaID=6895383131
[2025-11-26 20:22:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/multiboinc/boinc228/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:25:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:25:54] 2025-11-28 03:25:09,297 | INFO     | monitor loop #5342: job 0:6895383131 is in state 'finished'
[2025-11-27 19:25:54] 2025-11-28 03:25:09,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:25:54] 2025-11-28 03:25:10,486 | INFO     | time since job start (82923s) is within the limit (172800.0s)
[2025-11-27 19:25:54] 2025-11-28 03:25:11,802 | INFO     | monitor loop #5343: job 0:6895383131 is in state 'finished'
[2025-11-27 19:25:54] 2025-11-28 03:25:11,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:25:54] 2025-11-28 03:25:12,491 | INFO     | time since job start (82925s) is within the limit (172800.0s)
[2025-11-27 19:25:54] 2025-11-28 03:25:14,308 | INFO     | monitor loop #5344: job 0:6895383131 is in state 'finished'
[2025-11-27 19:25:54] 2025-11-28 03:25:14,309 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:25:54] 2025-11-28 03:25:14,497 | INFO     | PID=554577 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 19:25:54] 2025-11-28 03:25:14,498 | INFO     | .. there are 12 such processes running
[2025-11-27 19:25:54] 2025-11-28 03:25:15,498 | INFO     | time since job start (82928s) is within the limit (172800.0s)
[2025-11-27 19:25:54] 2025-11-28 03:25:16,812 | INFO     | monitor loop #5345: job 0:6895383131 is in state 'finished'
[2025-11-27 19:25:54] 2025-11-28 03:25:16,812 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:25:54] 2025-11-28 03:25:17,511 | INFO     | time since job start (82930s) is within the limit (172800.0s)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,061 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 19:25:54] 2025-11-28 03:25:19,073 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3249.7840000000006
[2025-11-27 19:25:54] 2025-11-28 03:25:19,099 | INFO     | using path: /var/lib/multiboinc/boinc228/slots/3/PanDA_Pilot-6895383131/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,099 | INFO     | extracted standard info from prmon json
[2025-11-27 19:25:54] 2025-11-28 03:25:19,099 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 19:25:54] 2025-11-28 03:25:19,099 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 19:25:54] 2025-11-28 03:25:19,184 | INFO     | fitting pss+swap vs Time
[2025-11-27 19:25:54] 2025-11-28 03:25:19,191 | INFO     | sum of square deviations: 776567817917.9882
[2025-11-27 19:25:54] 2025-11-28 03:25:19,329 | INFO     | monitor loop #5346: job 0:6895383131 is in state 'finished'
[2025-11-27 19:25:54] 2025-11-28 03:25:19,330 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,333 | INFO     | sum of deviations: 3264874213068.899
[2025-11-27 19:25:54] 2025-11-28 03:25:19,333 | INFO     | mean x: 1764258860.425626
[2025-11-27 19:25:54] 2025-11-28 03:25:19,333 | INFO     | mean y: 3138849.617820324
[2025-11-27 19:25:54] 2025-11-28 03:25:19,333 | INFO     | intersect: -7414221393.335564
[2025-11-27 19:25:54] 2025-11-28 03:25:19,344 | INFO     | chi2: 14.582988205971086
[2025-11-27 19:25:54] 2025-11-28 03:25:19,345 | INFO     | sum of square deviations: 768023320768.1525
[2025-11-27 19:25:54] 2025-11-28 03:25:19,500 | INFO     | sum of deviations: 3783730692593.1753
[2025-11-27 19:25:54] 2025-11-28 03:25:19,500 | INFO     | mean x: 1764258707.940133
[2025-11-27 19:25:54] 2025-11-28 03:25:19,506 | INFO     | mean y: 3148108.125646711
[2025-11-27 19:25:54] 2025-11-28 03:25:19,506 | INFO     | intersect: -8688618980.706055
[2025-11-27 19:25:54] 2025-11-28 03:25:19,508 | INFO     | chi2: 11.143363478960682
[2025-11-27 19:25:54] 2025-11-28 03:25:19,508 | INFO     | current chi2=11.143363478960682 (change=23.586556324594916 %)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,508 | INFO     | right removable region: 1352
[2025-11-27 19:25:54] 2025-11-28 03:25:19,515 | INFO     | sum of square deviations: 768020068858.1508
[2025-11-27 19:25:54] 2025-11-28 03:25:19,524 | INFO     | time since job start (82932s) is within the limit (172800.0s)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,667 | INFO     | sum of deviations: 2720418003174.4985
[2025-11-27 19:25:54] 2025-11-28 03:25:19,667 | INFO     | mean x: 1764259012.940133
[2025-11-27 19:25:54] 2025-11-28 03:25:19,667 | INFO     | mean y: 3148561.858093126
[2025-11-27 19:25:54] 2025-11-28 03:25:19,667 | INFO     | intersect: -6246065717.400089
[2025-11-27 19:25:54] 2025-11-28 03:25:19,668 | INFO     | chi2: 11.126306944566553
[2025-11-27 19:25:54] 2025-11-28 03:25:19,668 | INFO     | current chi2=11.126306944566553 (change=23.703518185588162 %)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,669 | INFO     | left removable region: 10
[2025-11-27 19:25:54] 2025-11-28 03:25:19,679 | INFO     | sum of square deviations: 749440114340.479
[2025-11-27 19:25:54] 2025-11-28 03:25:19,824 | INFO     | sum of deviations: 2963989342810.783
[2025-11-27 19:25:54] 2025-11-28 03:25:19,824 | INFO     | mean x: 1764258982.4724293
[2025-11-27 19:25:54] 2025-11-28 03:25:19,824 | INFO     | mean y: 3166496.1564828614
[2025-11-27 19:25:54] 2025-11-28 03:25:19,824 | INFO     | intersect: -6974368762.425595
[2025-11-27 19:25:54] 2025-11-28 03:25:19,834 | INFO     | chi2: 5.508352738948626
[2025-11-27 19:25:54] 2025-11-28 03:25:19,835 | INFO     | current memory leak: 3.95 B/s (using 1342 data points, chi2=5.51)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,836 | INFO     | could have reported an average CPU frequency of 3249 MHz (49 samples)
[2025-11-27 19:25:54] 2025-11-28 03:25:19,836 | INFO     | ..............................
[2025-11-27 19:25:54] 2025-11-28 03:25:19,836 | INFO     | . Timing measurements:
[2025-11-27 19:25:54] 2025-11-28 03:25:19,836 | INFO     | . get job = 0 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,836 | INFO     | . initial setup = 5 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,836 | INFO     | . payload setup = 22 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,845 | INFO     | . stage-in = 0 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,846 | INFO     | . payload execution = 82833 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,846 | INFO     | . stage-out = 8 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,846 | INFO     | . log creation = 2 s
[2025-11-27 19:25:54] 2025-11-28 03:25:19,846 | INFO     | ..............................
[2025-11-27 19:25:54] 2025-11-28 03:25:20,194 | INFO     | 
[2025-11-27 19:25:54] 2025-11-28 03:25:20,194 | INFO     | job summary report
[2025-11-27 19:25:54] 2025-11-28 03:25:20,194 | INFO     | --------------------------------------------------
[2025-11-27 19:25:54] 2025-11-28 03:25:20,194 | INFO     | PanDA job id: 6895383131
[2025-11-27 19:25:54] 2025-11-28 03:25:20,194 | INFO     | task id: 47556137
[2025-11-27 19:25:54] 2025-11-28 03:25:20,194 | INFO     | errors: (none)
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | pilot state: finished 
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | transexitcode: 0
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | exeerrorcode: 0
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | exeerrordiag: 
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | exitcode: 0
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | exitmsg: OK
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | cpuconsumptiontime: 218978 s
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | nevents: 1000
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | neventsw: 0
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | pid: 561339
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | pgrp: 561339
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | corecount: 10
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | event service: False
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | sizes: {0: 2284102, 1: 2284186, 2: 2284385, 13: 2284385, 20: 2284703, 24: 2284731, 82859: 2349997, 82860: 2349996, 82870: 2359074, 82872: 2359130, 82892: 2359376}
[2025-11-27 19:25:54] 2025-11-28 03:25:20,195 | INFO     | --------------------------------------------------
[2025-11-27 19:25:54] 2025-11-28 03:25:20,196 | INFO     | 
[2025-11-27 19:25:54] 2025-11-28 03:25:20,196 | INFO     | executing command: ls -lF /var/lib/multiboinc/boinc228/slots/3
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,272 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,273 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:25:54] 2025-11-28 03:25:20,274 | INFO     | job 6895383131 has completed (purged errors)
[2025-11-27 19:25:54] 2025-11-28 03:25:20,274 | INFO     | overall cleanup function is called
[2025-11-27 19:25:54] 2025-11-28 03:25:21,348 | INFO     | --- collectZombieJob: --- 10, [561339]
[2025-11-27 19:25:54] 2025-11-28 03:25:21,348 | INFO     | zombie collector waiting for pid 561339
[2025-11-27 19:25:54] 2025-11-28 03:25:21,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:25:54] 2025-11-28 03:25:21,349 | INFO     | collected zombie processes
[2025-11-27 19:25:54] 2025-11-28 03:25:21,349 | INFO     | will attempt to kill all subprocesses of pid=561339
[2025-11-27 19:25:54] 2025-11-28 03:25:22,435 | INFO     | process IDs to be killed: [561339] (in reverse order)
[2025-11-27 19:25:54] 2025-11-28 03:25:22,795 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:25:54] 2025-11-28 03:25:22,796 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:25:54] 2025-11-28 03:25:22,831 | INFO     | did not find any defunct processes belonging to 561339
[2025-11-27 19:25:54] 2025-11-28 03:25:22,861 | INFO     | did not find any defunct processes belonging to 561339
[2025-11-27 19:25:54] 2025-11-28 03:25:22,866 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:25:54] 2025-11-28 03:25:22,866 | INFO     | ready for new job
[2025-11-27 19:25:54] 2025-11-28 03:25:22,866 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:25:54] 2025-11-28 03:25:22,877 | INFO     | ***************************************
[2025-11-27 19:25:54] 2025-11-28 03:25:22,877 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:25:54] 2025-11-28 03:25:22,877 | INFO     | ***************************************
[2025-11-27 19:25:54] 2025-11-28 03:25:22,877 | INFO     | 
[2025-11-27 19:25:54] 2025-11-28 03:25:22,884 | INFO     | architecture information:
[2025-11-27 19:25:54] 2025-11-28 03:25:22,889 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:25:54] 2025-11-28 03:25:22,954 | INFO     | cat /etc/os-release:
[2025-11-27 19:25:54] NAME="CentOS Linux"
[2025-11-27 19:25:54] VERSION="7 (Core)"
[2025-11-27 19:25:54] ID="centos"
[2025-11-27 19:25:54] ID_LIKE="rhel fedora"
[2025-11-27 19:25:54] VERSION_ID="7"
[2025-11-27 19:25:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:25:54] ANSI_COLOR="0;31"
[2025-11-27 19:25:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:25:54] HOME_URL="https://www.centos.org/"
[2025-11-27 19:25:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:25:54] 
[2025-11-27 19:25:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:25:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:25:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:25:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:25:54] 
[2025-11-27 19:25:54] 2025-11-28 03:25:22,954 | INFO     | ***************************************
[2025-11-27 19:25:54] 2025-11-28 03:25:23,456 | INFO     | executing command: df -mP /var/lib/multiboinc/boinc228/slots/3
[2025-11-27 19:25:54] 2025-11-28 03:25:23,525 | INFO     | sufficient remaining disk space (56193187840 B)
[2025-11-27 19:25:54] 2025-11-28 03:25:23,525 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:25:54] 2025-11-28 03:25:23,525 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:25:54] 2025-11-28 03:25:23,525 | INFO     | update_server=False
[2025-11-27 19:25:54] 2025-11-28 03:25:23,525 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:25:54] 2025-11-28 03:25:23,525 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:25:54] 2025-11-28 03:25:23,526 | INFO     | aborting loop
[2025-11-27 19:25:54] 2025-11-28 03:25:23,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:25:54] 2025-11-28 03:25:23,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:25:54] 2025-11-28 03:25:24,310 | INFO     | all data control threads have been joined
[2025-11-27 19:25:54] 2025-11-28 03:25:24,387 | INFO     | all job control threads have been joined
[2025-11-27 19:25:54] 2025-11-28 03:25:24,535 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:24,539 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:24,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:24,809 | INFO     | all payload control threads have been joined
[2025-11-27 19:25:54] 2025-11-28 03:25:24,981 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:25:54] 2025-11-28 03:25:25,005 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,223 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:25:54] 2025-11-28 03:25:25,315 | INFO     | [data] control thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,392 | INFO     | [job] control thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,507 | INFO     | [job] validate thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,509 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,801 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,814 | INFO     | [payload] control thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,892 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:25,942 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:26,090 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:26,092 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:26,228 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:27,989 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:25:54] 2025-11-28 03:25:28,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123671330219840)>', '<ExcThread(monitor, started 123670680819456)>']
[2025-11-27 19:25:54] 2025-11-28 03:25:33,690 | INFO     | all workflow threads have been joined
[2025-11-27 19:25:54] 2025-11-28 03:25:33,690 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:25:54] 2025-11-28 03:25:33,691 | INFO     | traces error code: 0
[2025-11-27 19:25:54] 2025-11-28 03:25:33,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:25:54] 2025-11-28 03:25:53,605 | INFO     | PID=554577 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 19:25:54] 2025-11-28 03:25:53,606 | INFO     | .. there are 12 such processes running
[2025-11-27 19:25:54] 2025-11-28 03:25:53,606 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:25:54] 2025-11-28 03:25:53,606 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:25:54] 2025-11-28 03:25:53,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:25:54] 2025-11-28 03:25:53,606 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:25:54] 2025-11-28 03:25:53,606 | INFO     | [monitor] control thread has ended
[2025-11-27 19:25:54] 2025-11-28 03:25:54,120 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:25:54] 2025-11-28 03:25:54,134 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:25:54] 2025-11-28 03:25:54,149 [wrapper] pilotpid: 554577
[2025-11-27 19:25:54] 2025-11-28 03:25:54,168 [wrapper] Pilot exit status: 0
[2025-11-27 19:25:54] 2025-11-28 03:25:54,231 [wrapper] pandaids: 6895383131
[2025-11-27 19:25:54] 2025-11-28 03:25:54,470 [wrapper] cleanup supervisor_pilot 2087694 554578
[2025-11-27 19:25:54] 2025-11-28 03:25:54,489 [wrapper] Test setup, not cleaning
[2025-11-27 19:25:54] 2025-11-28 03:25:54,511 [wrapper] apfmon messages muted
[2025-11-27 19:25:54] 2025-11-28 03:25:54,531 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:25:54] 2025-11-28 03:25:54,553 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:25:54]  *** Error codes and diagnostics ***
[2025-11-27 19:25:54]     "exeErrorCode": 0,
[2025-11-27 19:25:54]     "exeErrorDiag": "",
[2025-11-27 19:25:54]     "pilotErrorCode": 0,
[2025-11-27 19:25:54]     "pilotErrorDiag": "",
[2025-11-27 19:25:54]  *** Listing of results directory ***
[2025-11-27 19:25:54] total 1325568
[2025-11-27 19:25:54] -rw-r--r-- 1 root root    576529 Nov 23 20:09 pilot3.tar.gz
[2025-11-27 19:25:54] -rwx------ 1 4871 1028     36292 Nov 23 20:19 runpilot2-wrapper.sh
[2025-11-27 19:25:54] -rw-r--r-- 1 root root      5112 Nov 23 20:19 queuedata.json
[2025-11-27 19:25:54] -rw-r--r-- 1 root root       100 Nov 26 20:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:25:54] -rwxr-xr-x 1 root root      7986 Nov 26 20:22 run_atlas
[2025-11-27 19:25:54] -rw-r--r-- 1 root root       105 Nov 26 20:22 job.xml
[2025-11-27 19:25:54] -rw-r--r-- 2 root root 408763084 Nov 26 20:22 EVNT.47483658._001006.pool.root.1
[2025-11-27 19:25:54] drwxrwx--x 2 root root      4096 Nov 26 20:22 shared
[2025-11-27 19:25:54] -rw-r--r-- 2 root root    590101 Nov 26 20:22 input.tar.gz
[2025-11-27 19:25:54] -rw-r--r-- 2 root root     15847 Nov 26 20:22 start_atlas.sh
[2025-11-27 19:25:54] -rw-r--r-- 1 root root         0 Nov 26 20:22 boinc_setup_complete
[2025-11-27 19:25:54] -rw-r--r-- 1 root root      9234 Nov 26 20:22 init_data.xml
[2025-11-27 19:25:54] -rw-r--r-- 1 root root         0 Nov 26 20:22 boinc_lockfile
[2025-11-27 19:25:54] -rw-r--r-- 1 root root      2786 Nov 26 20:22 pandaJob.out
[2025-11-27 19:25:54] -rw------- 1 root root    991570 Nov 26 20:23 agis_schedconf.cvmfs.json
[2025-11-27 19:25:54] drwxr-xr-x 5  320  320      4096 Nov 26 20:23 pilot3
[2025-11-27 19:25:54] -rw-r--r-- 1 root root       532 Nov 27 19:00 boinc_task_state.xml
[2025-11-27 19:25:54] -rw------- 1 root root 916867984 Nov 27 19:23 HITS.47556137._009926.pool.root.1
[2025-11-27 19:25:54] -rw------- 1 root root      1052 Nov 27 19:24 memory_monitor_summary.json
[2025-11-27 19:25:54] -rw------- 1 root root   1516240 Nov 27 19:24 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:25:54] -rw------- 1 root root   2679363 Nov 27 19:24 log.47556137._009926.job.log.tgz.1
[2025-11-27 19:25:54] -rw------- 1 root root      8606 Nov 27 19:25 heartbeat.json
[2025-11-27 19:25:54] -rw------- 1 root root        95 Nov 27 19:25 pilot_heartbeat.json
[2025-11-27 19:25:54] -rw-r--r-- 1 root root        29 Nov 27 19:25 wrapper_checkpoint.txt
[2025-11-27 19:25:54] -rw-r--r-- 1 root root      8192 Nov 27 19:25 boinc_mmap_file
[2025-11-27 19:25:54] -rw------- 1 root root       822 Nov 27 19:25 pilotlog.txt
[2025-11-27 19:25:54] -rw------- 1 root root  11233477 Nov 27 19:25 log.47556137._009926.job.log.1
[2025-11-27 19:25:54] -rw------- 1 root root       353 Nov 27 19:25 output.list
[2025-11-27 19:25:54] -rw-r--r-- 1 root root       620 Nov 27 19:25 runtime_log
[2025-11-27 19:25:54] -rw------- 1 root root  13936640 Nov 27 19:25 result.tar.gz
[2025-11-27 19:25:54] -rw-r--r-- 1 root root      9021 Nov 27 19:25 runtime_log.err
[2025-11-27 19:25:54] -rw------- 1 root root       664 Nov 27 19:25 PcnNDm0Ddh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXPLKDmXVVVOm.diag
[2025-11-27 19:25:54] -rw-r--r-- 1 root root     21990 Nov 27 19:25 stderr.txt
[2025-11-27 19:25:55] HITS file was successfully produced:
[2025-11-27 19:25:55] -rw------- 1 root root 916867984 Nov 27 19:23 shared/HITS.pool.root.1
[2025-11-27 19:25:55]  *** Contents of shared directory: ***
[2025-11-27 19:25:55] total 1308780
[2025-11-27 19:25:55] -rw-r--r-- 2 root root 408763084 Nov 26 20:22 ATLAS.root_0
[2025-11-27 19:25:55] -rw-r--r-- 2 root root    590101 Nov 26 20:22 input.tar.gz
[2025-11-27 19:25:55] -rw-r--r-- 2 root root     15847 Nov 26 20:22 start_atlas.sh
[2025-11-27 19:25:55] -rw------- 1 root root 916867984 Nov 27 19:23 HITS.pool.root.1
[2025-11-27 19:25:55] -rw------- 1 root root  13936640 Nov 27 19:25 result.tar.gz
19:25:56 (550709): run_atlas exited; CPU time 219098.948320
19:25:56 (550709): called boinc_finish(0)

</stderr_txt>
]]>

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