Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:56:38 (1162865): wrapper (7.7.26015): starting
12:56:38 (1162865): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 12:56:38] Arguments: --nthreads 8
[2025-11-25 12:56:38] Threads: 8
[2025-11-25 12:56:38] Checking for CVMFS
[2025-11-25 12:56:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 12:56:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 12:56:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 12:56:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 12:56:39] 2.13.2.0 6099 33291 289044 153292 1 155 22019305 40960001 9709 16776704 0 36622736 99.762 22966974 36135 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 12:56:39] CVMFS is ok
[2025-11-25 12:56:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 12:56:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 12:56:39] Further information can be found at the LHC@home message board.
[2025-11-25 12:56:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 12:56:39] Checking for apptainer binary...
[2025-11-25 12:56:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 12:56:39] Running /usr/bin/apptainer --version
[2025-11-25 12:56:42] apptainer version 1.4.4-1.el9
[2025-11-25 12:56:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 12:56:42] c-210-31-2.aglt2.org
[2025-11-25 12:56:42] apptainer works
[2025-11-25 12:56:42] Set ATHENA_PROC_NUMBER=8
[2025-11-25 12:56:42] Set ATHENA_CORE_NUMBER=8
[2025-11-25 12:56:42] Starting ATLAS job with PandaID=6895383329
[2025-11-25 12:56:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:46:51 (1518139): wrapper (7.7.26015): starting
15:46:51 (1518139): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 15:46:51] Arguments: --nthreads 8
[2025-11-25 15:46:51] Threads: 8
[2025-11-25 15:46:51] This job has been restarted, cleaning up previous attempt
[2025-11-25 15:46:52] Checking for CVMFS
[2025-11-25 15:46:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 15:46:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 15:46:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 15:46:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 15:46:52] 2.13.2.0 6099 33461 291572 153297 3 54 22235767 40960001 8749 16776704 0 36932368 99.764 22974728 36132 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 15:46:52] CVMFS is ok
[2025-11-25 15:46:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 15:46:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 15:46:52] Further information can be found at the LHC@home message board.
[2025-11-25 15:46:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 15:46:52] Checking for apptainer binary...
[2025-11-25 15:46:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 15:46:52] Running /usr/bin/apptainer --version
[2025-11-25 15:46:52] apptainer version 1.4.4-1.el9
[2025-11-25 15:46:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 15:46:52] c-210-31-2.aglt2.org
[2025-11-25 15:46:52] apptainer works
[2025-11-25 15:46:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 15:46:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 15:46:52] Starting ATLAS job with PandaID=6895383329
[2025-11-25 15:46:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:33:01]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:33:01] 2025-11-27 07:31:59,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:33:01] 2025-11-27 07:32:00,609 | INFO     | time since job start (125089s) is within the limit (172800.0s)
[2025-11-27 02:33:01] 2025-11-27 07:32:01,943 | INFO     | monitor loop #7657: job 0:6895383329 is in state 'finished'
[2025-11-27 02:33:01] 2025-11-27 07:32:01,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:33:01] 2025-11-27 07:32:02,616 | INFO     | time since job start (125091s) is within the limit (172800.0s)
[2025-11-27 02:33:01] 2025-11-27 07:32:04,451 | INFO     | monitor loop #7658: job 0:6895383329 is in state 'finished'
[2025-11-27 02:33:01] 2025-11-27 07:32:04,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:33:01] 2025-11-27 07:32:05,397 | INFO     | PID=1529357 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:33:01] 2025-11-27 07:32:05,397 | INFO     | .. there are 11 such processes running
[2025-11-27 02:33:01] 2025-11-27 07:32:06,399 | INFO     | time since job start (125095s) is within the limit (172800.0s)
[2025-11-27 02:33:01] 2025-11-27 07:32:06,965 | INFO     | monitor loop #7659: job 0:6895383329 is in state 'finished'
[2025-11-27 02:33:01] 2025-11-27 07:32:06,966 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:33:01] 2025-11-27 07:32:08,410 | INFO     | time since job start (125097s) is within the limit (172800.0s)
[2025-11-27 02:33:01] 2025-11-27 07:32:08,733 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:33:01] 2025-11-27 07:32:08,765 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2610.413071428572
[2025-11-27 02:33:01] 2025-11-27 07:32:08,826 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895383329/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:33:01] 2025-11-27 07:32:08,827 | INFO     | extracted standard info from prmon json
[2025-11-27 02:33:01] 2025-11-27 07:32:08,827 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:33:01] 2025-11-27 07:32:08,827 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:33:01] 2025-11-27 07:32:08,945 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:33:01] 2025-11-27 07:32:08,957 | INFO     | sum of square deviations: 2671402493547.9727
[2025-11-27 02:33:01] 2025-11-27 07:32:09,565 | INFO     | monitor loop #7660: job 0:6895383329 is in state 'finished'
[2025-11-27 02:33:01] 2025-11-27 07:32:09,565 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:33:01] 2025-11-27 07:32:09,663 | INFO     | sum of deviations: 7237750223439.074
[2025-11-27 02:33:01] 2025-11-27 07:32:09,663 | INFO     | mean x: 1764166174.8551219
[2025-11-27 02:33:01] 2025-11-27 07:32:09,664 | INFO     | mean y: 2972622.363902439
[2025-11-27 02:33:01] 2025-11-27 07:32:09,664 | INFO     | intersect: -4776761677.158649
[2025-11-27 02:33:01] 2025-11-27 07:32:09,666 | INFO     | chi2: 14.773641304966512
[2025-11-27 02:33:01] 2025-11-27 07:32:09,693 | INFO     | sum of square deviations: 2651905226214.7764
[2025-11-27 02:33:01] 2025-11-27 07:32:10,089 | INFO     | sum of deviations: 7974339023151.527
[2025-11-27 02:33:01] 2025-11-27 07:32:10,089 | INFO     | mean x: 1764166022.3628361
[2025-11-27 02:33:01] 2025-11-27 07:32:10,089 | INFO     | mean y: 2978382.4224938876
[2025-11-27 02:33:01] 2025-11-27 07:32:10,089 | INFO     | intersect: -5301908766.778595
[2025-11-27 02:33:01] 2025-11-27 07:32:10,092 | INFO     | chi2: 11.338633880496376
[2025-11-27 02:33:01] 2025-11-27 07:32:10,092 | INFO     | current chi2=11.338633880496376 (change=23.250919347252434 %)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,092 | INFO     | right removable region: 2044
[2025-11-27 02:33:01] 2025-11-27 07:32:10,099 | INFO     | sum of square deviations: 2651902528497.987
[2025-11-27 02:33:01] 2025-11-27 07:32:10,326 | INFO     | sum of deviations: 6626849822548.238
[2025-11-27 02:33:01] 2025-11-27 07:32:10,326 | INFO     | mean x: 1764166327.3579462
[2025-11-27 02:33:01] 2025-11-27 07:32:10,326 | INFO     | mean y: 2977397.293398533
[2025-11-27 02:33:01] 2025-11-27 07:32:10,326 | INFO     | intersect: -4405504885.808907
[2025-11-27 02:33:01] 2025-11-27 07:32:10,328 | INFO     | chi2: 12.39111075860078
[2025-11-27 02:33:01] 2025-11-27 07:32:10,329 | INFO     | current chi2=12.39111075860078 (change=16.12690126411007 %)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,329 | INFO     | left removable region: 10
[2025-11-27 02:33:01] 2025-11-27 07:32:10,387 | INFO     | sum of square deviations: 2609340723341.9536
[2025-11-27 02:33:01] 2025-11-27 07:32:10,501 | INFO     | time since job start (125099s) is within the limit (172800.0s)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,656 | INFO     | sum of deviations: 7285423764890.058
[2025-11-27 02:33:01] 2025-11-27 07:32:10,657 | INFO     | mean x: 1764166296.8687315
[2025-11-27 02:33:01] 2025-11-27 07:32:10,657 | INFO     | mean y: 2985860.1725663715
[2025-11-27 02:33:01] 2025-11-27 07:32:10,657 | INFO     | intersect: -4922664113.190917
[2025-11-27 02:33:01] 2025-11-27 07:32:10,663 | INFO     | chi2: 8.2586924029167
[2025-11-27 02:33:01] 2025-11-27 07:32:10,664 | INFO     | current memory leak: 2.79 B/s (using 2034 data points, chi2=8.26)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | could have reported an average CPU frequency of 2766 MHz (72 samples)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | ..............................
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | . Timing measurements:
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | . get job = 0 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | . initial setup = 1 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | . payload setup = 12 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | . stage-in = 0 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,666 | INFO     | . payload execution = 125012 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,667 | INFO     | . stage-out = 11 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,667 | INFO     | . log creation = 2 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,667 | INFO     | ..............................
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | 
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | job summary report
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | --------------------------------------------------
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | PanDA job id: 6895383329
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | task id: 47556149
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | errors: (none)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | pilot state: finished 
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | transexitcode: 0
[2025-11-27 02:33:01] 2025-11-27 07:32:10,866 | INFO     | exeerrorcode: 0
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | exeerrordiag: 
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | exitcode: 0
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | exitmsg: OK
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | cpuconsumptiontime: 253584 s
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | nevents: 1000
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | neventsw: 0
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | pid: 1548872
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | pgrp: 1548872
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | corecount: 8
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | event service: False
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | sizes: {0: 2283436, 1: 2284292, 2: 2284292, 9: 2284582, 13: 2284610, 125028: 2367510, 125029: 2367637, 125041: 2376687, 125044: 2376743, 125079: 2376989}
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | --------------------------------------------------
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | 
[2025-11-27 02:33:01] 2025-11-27 07:32:10,867 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,946 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:33:01] 2025-11-27 07:32:10,947 | INFO     | job 6895383329 has completed (purged errors)
[2025-11-27 02:33:01] 2025-11-27 07:32:10,947 | INFO     | overall cleanup function is called
[2025-11-27 02:33:01] 2025-11-27 07:32:11,989 | INFO     | --- collectZombieJob: --- 10, [1548872]
[2025-11-27 02:33:01] 2025-11-27 07:32:11,990 | INFO     | zombie collector waiting for pid 1548872
[2025-11-27 02:33:01] 2025-11-27 07:32:11,990 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:33:01] 2025-11-27 07:32:11,990 | INFO     | collected zombie processes
[2025-11-27 02:33:01] 2025-11-27 07:32:11,990 | INFO     | will attempt to kill all subprocesses of pid=1548872
[2025-11-27 02:33:01] 2025-11-27 07:32:13,615 | INFO     | process IDs to be killed: [1548872] (in reverse order)
[2025-11-27 02:33:01] 2025-11-27 07:32:14,246 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:33:01] 2025-11-27 07:32:14,247 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:33:01] 2025-11-27 07:32:14,273 | INFO     | did not find any defunct processes belonging to 1548872
[2025-11-27 02:33:01] 2025-11-27 07:32:14,293 | INFO     | did not find any defunct processes belonging to 1548872
[2025-11-27 02:33:01] 2025-11-27 07:32:14,306 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:33:01] 2025-11-27 07:32:14,306 | INFO     | ready for new job
[2025-11-27 02:33:01] 2025-11-27 07:32:14,306 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:33:01] 2025-11-27 07:32:14,332 | INFO     | ***************************************
[2025-11-27 02:33:01] 2025-11-27 07:32:14,338 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:33:01] 2025-11-27 07:32:14,338 | INFO     | ***************************************
[2025-11-27 02:33:01] 2025-11-27 07:32:14,338 | INFO     | 
[2025-11-27 02:33:01] 2025-11-27 07:32:14,354 | INFO     | architecture information:
[2025-11-27 02:33:01] 2025-11-27 07:32:14,355 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:33:01] 2025-11-27 07:32:14,411 | INFO     | cat /etc/os-release:
[2025-11-27 02:33:01] NAME="CentOS Linux"
[2025-11-27 02:33:01] VERSION="7 (Core)"
[2025-11-27 02:33:01] ID="centos"
[2025-11-27 02:33:01] ID_LIKE="rhel fedora"
[2025-11-27 02:33:01] VERSION_ID="7"
[2025-11-27 02:33:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:33:01] ANSI_COLOR="0;31"
[2025-11-27 02:33:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:33:01] HOME_URL="https://www.centos.org/"
[2025-11-27 02:33:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:33:01] 
[2025-11-27 02:33:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:33:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:33:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:33:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:33:01] 
[2025-11-27 02:33:01] 2025-11-27 07:32:14,416 | INFO     | ***************************************
[2025-11-27 02:33:01] 2025-11-27 07:32:14,920 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 02:33:01] 2025-11-27 07:32:15,006 | INFO     | sufficient remaining disk space (69289902080 B)
[2025-11-27 02:33:01] 2025-11-27 07:32:15,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:33:01] 2025-11-27 07:32:15,006 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:33:01] 2025-11-27 07:32:15,007 | INFO     | update_server=False
[2025-11-27 02:33:01] 2025-11-27 07:32:15,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:33:01] 2025-11-27 07:32:15,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:33:01] 2025-11-27 07:32:15,007 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:33:01] 2025-11-27 07:32:15,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:33:01] 2025-11-27 07:32:15,651 | INFO     | aborting loop
[2025-11-27 02:33:01] 2025-11-27 07:32:15,779 | INFO     | all payload control threads have been joined
[2025-11-27 02:33:01] 2025-11-27 07:32:15,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:33:01] 2025-11-27 07:32:16,014 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,083 | INFO     | all data control threads have been joined
[2025-11-27 02:33:01] 2025-11-27 07:32:16,121 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,174 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,175 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,175 | INFO     | [job] validate thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,176 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,443 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,657 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,725 | INFO     | all job control threads have been joined
[2025-11-27 02:33:01] 2025-11-27 07:32:16,786 | INFO     | [payload] control thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,898 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:16,986 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:17,016 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:17,090 | INFO     | [data] control thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:17,472 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:17,731 | INFO     | [job] control thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:19,020 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:33:01] 2025-11-27 07:32:33,163 [wrapper] supervise_pilot (15 min periods counter: 140)
[2025-11-27 02:33:01] 2025-11-27 07:32:44,222 | INFO     | PID=1529357 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:33:01] 2025-11-27 07:32:44,222 | INFO     | .. there are 11 such processes running
[2025-11-27 02:33:01] 2025-11-27 07:32:44,222 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:33:01] 2025-11-27 07:32:44,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:33:01] 2025-11-27 07:32:44,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:33:01] 2025-11-27 07:32:53,370 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:33:01] 2025-11-27 07:32:55,145 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636212438848)>', '<ExcThread(monitor, started 140635709351680)>']
[2025-11-27 02:33:01] 2025-11-27 07:32:55,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:33:01] 2025-11-27 07:32:55,300 | INFO     | [monitor] control thread has ended
[2025-11-27 02:33:01] 2025-11-27 07:33:00,169 | INFO     | all workflow threads have been joined
[2025-11-27 02:33:01] 2025-11-27 07:33:00,170 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:33:01] 2025-11-27 07:33:00,170 | INFO     | traces error code: 0
[2025-11-27 02:33:01] 2025-11-27 07:33:00,171 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:33:01] 2025-11-27 07:33:00,670 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:33:01] 2025-11-27 07:33:00,693 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:33:01] 2025-11-27 07:33:00,713 [wrapper] pilotpid: 1529357
[2025-11-27 02:33:01] 2025-11-27 07:33:00,735 [wrapper] Pilot exit status: 0
[2025-11-27 02:33:01] 2025-11-27 07:33:00,810 [wrapper] pandaids: 6895383329 6895383329
[2025-11-27 02:33:01] 2025-11-27 07:33:00,876 [wrapper] cleanup supervisor_pilot 1783898 1529358
[2025-11-27 02:33:01] 2025-11-27 07:33:00,880 [wrapper] Test setup, not cleaning
[2025-11-27 02:33:01] 2025-11-27 07:33:00,883 [wrapper] apfmon messages muted
[2025-11-27 02:33:01] 2025-11-27 07:33:00,886 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:33:01] 2025-11-27 07:33:00,889 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:33:01]  *** Error codes and diagnostics ***
[2025-11-27 02:33:01]     "exeErrorCode": 0,
[2025-11-27 02:33:01]     "exeErrorDiag": "",
[2025-11-27 02:33:01]     "pilotErrorCode": 0,
[2025-11-27 02:33:01]     "pilotErrorDiag": "",
[2025-11-27 02:33:01]  *** Listing of results directory ***
[2025-11-27 02:33:01] total 1731552
[2025-11-27 02:33:01] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 23:09 pilot3.tar.gz
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 23:16 queuedata.json
[2025-11-27 02:33:01] -rwx------. 1 boincer umatlas     36292 Nov 23 23:18 runpilot2-wrapper.sh
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas       100 Nov 25 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:33:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 12:56 run_atlas
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas       105 Nov 25 12:56 job.xml
[2025-11-27 02:33:01] -rw-r--r--. 3 boincer umatlas 410501864 Nov 25 12:56 EVNT.47483658._001216.pool.root.1
[2025-11-27 02:33:01] -rw-r--r--. 3 boincer umatlas 410501864 Nov 25 12:56 ATLAS.root_0
[2025-11-27 02:33:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:56 start_atlas.sh
[2025-11-27 02:33:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 12:56 shared
[2025-11-27 02:33:01] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 12:56 input.tar.gz
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas         0 Nov 25 12:56 boinc_lockfile
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 15:46 pandaJob.out
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas        57 Nov 25 15:46 setup.sh.local
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas    991893 Nov 25 15:47 agis_schedconf.cvmfs.json
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas       533 Nov 27 02:08 boinc_task_state.xml
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas      6844 Nov 27 02:28 init_data.xml
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas 910468280 Nov 27 02:29 HITS.47556149._002024.pool.root.1
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas      1069 Nov 27 02:31 memory_monitor_summary.json
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas   1516240 Nov 27 02:31 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas   2895873 Nov 27 02:31 log.47556149._002024.job.log.tgz.1
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas        96 Nov 27 02:31 pilot_heartbeat.json
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas      8638 Nov 27 02:32 heartbeat.json
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:32 boinc_mmap_file
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas      4824 Nov 27 02:33 pilotlog.txt
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:33 wrapper_checkpoint.txt
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas  15958815 Nov 27 02:33 log.47556149._002024.job.log.1
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas       353 Nov 27 02:33 output.list
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas       620 Nov 27 02:33 runtime_log
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas  18872320 Nov 27 02:33 result.tar.gz
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas      9439 Nov 27 02:33 runtime_log.err
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas       794 Nov 27 02:33 2xjMDmDDdh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmSPLKDmMPnn1n.diag
[2025-11-27 02:33:01] -rw-r--r--. 1 boincer umatlas     24036 Nov 27 02:33 stderr.txt
[2025-11-27 02:33:01] HITS file was successfully produced:
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas 910468280 Nov 27 02:29 shared/HITS.pool.root.1
[2025-11-27 02:33:01]  *** Contents of shared directory: ***
[2025-11-27 02:33:01] total 1309048
[2025-11-27 02:33:01] -rw-r--r--. 3 boincer umatlas 410501864 Nov 25 12:56 ATLAS.root_0
[2025-11-27 02:33:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 12:56 start_atlas.sh
[2025-11-27 02:33:01] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 12:56 input.tar.gz
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas 910468280 Nov 27 02:29 HITS.pool.root.1
[2025-11-27 02:33:01] -rw-------. 1 boincer umatlas  18872320 Nov 27 02:33 result.tar.gz
02:33:03 (1518139): run_atlas exited; CPU time 255325.925202
02:33:03 (1518139): called boinc_finish(0)

</stderr_txt>
]]>

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