Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:45:53 (3826029): wrapper (7.7.26015): starting
22:45:53 (3826029): wrapper: running run_atlas (--nthreads 10)
[2025-11-24 22:45:53] Arguments: --nthreads 10
[2025-11-24 22:45:53] Threads: 10
[2025-11-24 22:45:53] Checking for CVMFS
[2025-11-24 22:45:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:45:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:45:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:45:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:45:55] 2.13.3.0 7030 3406 247104 153268 3 465 30738478 32935936 58944 16776704 0 25535852 99.683 23894201 34013 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 22:45:55] CVMFS is ok
[2025-11-24 22:45:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:45:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:45:55] Further information can be found at the LHC@home message board.
[2025-11-24 22:45:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:45:55] Checking for apptainer binary...
[2025-11-24 22:45:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:45:55] Running /usr/bin/apptainer --version
[2025-11-24 22:45:55] apptainer version 1.4.4-1.el9
[2025-11-24 22:45:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:45:55] lc-10-10.aglt2.org
[2025-11-24 22:45:55] apptainer works
[2025-11-24 22:45:56] Set ATHENA_PROC_NUMBER=10
[2025-11-24 22:45:56] Set ATHENA_CORE_NUMBER=10
[2025-11-24 22:45:56] Starting ATLAS job with PandaID=6895366218
[2025-11-24 22:45:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 17:25:07]  *** The last 200 lines of the pilot log: ***
[2025-11-25 17:25:07] 2025-11-25 22:24:21,342 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:25:07] 2025-11-25 22:24:22,966 | INFO     | time since job start (67063s) is within the limit (172800.0s)
[2025-11-25 17:25:07] 2025-11-25 22:24:23,847 | INFO     | monitor loop #3333: job 0:6895366218 is in state 'finished'
[2025-11-25 17:25:07] 2025-11-25 22:24:23,847 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:25:07] 2025-11-25 22:24:24,993 | INFO     | time since job start (67065s) is within the limit (172800.0s)
[2025-11-25 17:25:07] 2025-11-25 22:24:26,363 | INFO     | monitor loop #3334: job 0:6895366218 is in state 'finished'
[2025-11-25 17:25:07] 2025-11-25 22:24:26,363 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:25:07] 2025-11-25 22:24:27,000 | INFO     | time since job start (67068s) is within the limit (172800.0s)
[2025-11-25 17:25:07] 2025-11-25 22:24:28,874 | INFO     | monitor loop #3335: job 0:6895366218 is in state 'finished'
[2025-11-25 17:25:07] 2025-11-25 22:24:28,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:25:07] 2025-11-25 22:24:29,023 | INFO     | time since job start (67070s) is within the limit (172800.0s)
[2025-11-25 17:25:07] 2025-11-25 22:24:29,023 | INFO     | 67072s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 17:25:07] 2025-11-25 22:24:31,029 | INFO     | time since job start (67072s) is within the limit (172800.0s)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,403 | INFO     | monitor loop #3336: job 0:6895366218 is in state 'finished'
[2025-11-25 17:25:07] 2025-11-25 22:24:31,403 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,761 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 17:25:07] 2025-11-25 22:24:31,768 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2750.0013333333336
[2025-11-25 17:25:07] 2025-11-25 22:24:31,788 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895366218/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,789 | INFO     | extracted standard info from prmon json
[2025-11-25 17:25:07] 2025-11-25 22:24:31,792 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 17:25:07] 2025-11-25 22:24:31,792 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 17:25:07] 2025-11-25 22:24:31,808 | INFO     | fitting pss+swap vs Time
[2025-11-25 17:25:07] 2025-11-25 22:24:31,810 | INFO     | sum of square deviations: 410457694707.6064
[2025-11-25 17:25:07] 2025-11-25 22:24:31,831 | INFO     | sum of deviations: 1688762312948.1064
[2025-11-25 17:25:07] 2025-11-25 22:24:31,832 | INFO     | mean x: 1764075951.9125683
[2025-11-25 17:25:07] 2025-11-25 22:24:31,832 | INFO     | mean y: 3172901.1156648453
[2025-11-25 17:25:07] 2025-11-25 22:24:31,832 | INFO     | intersect: -7254834496.918855
[2025-11-25 17:25:07] 2025-11-25 22:24:31,833 | INFO     | chi2: 14.783931317592298
[2025-11-25 17:25:07] 2025-11-25 22:24:31,834 | INFO     | sum of square deviations: 404876770031.61163
[2025-11-25 17:25:07] 2025-11-25 22:24:31,856 | INFO     | sum of deviations: 2091190690017.8184
[2025-11-25 17:25:07] 2025-11-25 22:24:31,856 | INFO     | mean x: 1764075799.4281793
[2025-11-25 17:25:07] 2025-11-25 22:24:31,856 | INFO     | mean y: 3183894.239707228
[2025-11-25 17:25:07] 2025-11-25 22:24:31,856 | INFO     | intersect: -9108277076.864958
[2025-11-25 17:25:07] 2025-11-25 22:24:31,858 | INFO     | chi2: 11.598807347621356
[2025-11-25 17:25:07] 2025-11-25 22:24:31,858 | INFO     | current chi2=11.598807347621356 (change=21.544499237362995 %)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,858 | INFO     | right removable region: 1092
[2025-11-25 17:25:07] 2025-11-25 22:24:31,859 | INFO     | sum of square deviations: 404874484361.6121
[2025-11-25 17:25:07] 2025-11-25 22:24:31,880 | INFO     | sum of deviations: 1235142297286.9612
[2025-11-25 17:25:07] 2025-11-25 22:24:31,881 | INFO     | mean x: 1764076104.4281793
[2025-11-25 17:25:07] 2025-11-25 22:24:31,881 | INFO     | mean y: 3185289.241537054
[2025-11-25 17:25:07] 2025-11-25 22:24:31,881 | INFO     | intersect: -5378445552.840355
[2025-11-25 17:25:07] 2025-11-25 22:24:31,882 | INFO     | chi2: 11.20195067415256
[2025-11-25 17:25:07] 2025-11-25 22:24:31,882 | INFO     | current chi2=11.20195067415256 (change=24.228877735500042 %)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,882 | INFO     | left removable region: 10
[2025-11-25 17:25:07] 2025-11-25 22:24:31,884 | INFO     | sum of square deviations: 392773118237.12823
[2025-11-25 17:25:07] 2025-11-25 22:24:31,906 | INFO     | sum of deviations: 1531212701273.0574
[2025-11-25 17:25:07] 2025-11-25 22:24:31,906 | INFO     | mean x: 1764076073.9584103
[2025-11-25 17:25:07] 2025-11-25 22:24:31,906 | INFO     | mean y: 3204066.823475046
[2025-11-25 17:25:07] 2025-11-25 22:24:31,906 | INFO     | intersect: -6873986771.950402
[2025-11-25 17:25:07] 2025-11-25 22:24:31,907 | INFO     | chi2: 6.603104213203941
[2025-11-25 17:25:07] 2025-11-25 22:24:31,907 | INFO     | current memory leak: 3.90 B/s (using 1082 data points, chi2=6.60)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | could have reported an average CPU frequency of 2733 MHz (40 samples)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | ..............................
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | . Timing measurements:
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | . get job = 0 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | . initial setup = 3 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | . payload setup = 22 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | . stage-in = 0 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,909 | INFO     | . payload execution = 66963 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,910 | INFO     | . stage-out = 6 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,910 | INFO     | . log creation = 1 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,910 | INFO     | ..............................
[2025-11-25 17:25:07] 2025-11-25 22:24:31,997 | INFO     | 
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | job summary report
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | --------------------------------------------------
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | PanDA job id: 6895366218
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | task id: 47556149
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | errors: (none)
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | pilot state: finished 
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | transexitcode: 0
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | exeerrorcode: 0
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | exeerrordiag: 
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | exitcode: 0
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | exitmsg: OK
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | cpuconsumptiontime: 251127 s
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | nevents: 1000
[2025-11-25 17:25:07] 2025-11-25 22:24:31,998 | INFO     | neventsw: 0
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | pid: 3843539
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | pgrp: 3843539
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | corecount: 10
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | event service: False
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | sizes: {0: 2284088, 1: 2284287, 12: 2284287, 19: 2284577, 23: 2284605, 66987: 2339742, 66988: 2339869, 66996: 2348924, 66998: 2348980, 67027: 2349226}
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | --------------------------------------------------
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | 
[2025-11-25 17:25:07] 2025-11-25 22:24:31,999 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 17:25:07] 2025-11-25 22:24:32,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,161 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | job 6895366218 has completed (purged errors)
[2025-11-25 17:25:07] 2025-11-25 22:24:32,162 | INFO     | overall cleanup function is called
[2025-11-25 17:25:07] 2025-11-25 22:24:33,201 | INFO     | --- collectZombieJob: --- 10, [3843539]
[2025-11-25 17:25:07] 2025-11-25 22:24:33,201 | INFO     | zombie collector waiting for pid 3843539
[2025-11-25 17:25:07] 2025-11-25 22:24:33,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 17:25:07] 2025-11-25 22:24:33,202 | INFO     | collected zombie processes
[2025-11-25 17:25:07] 2025-11-25 22:24:33,202 | INFO     | will attempt to kill all subprocesses of pid=3843539
[2025-11-25 17:25:07] 2025-11-25 22:24:35,212 | INFO     | process IDs to be killed: [3843539] (in reverse order)
[2025-11-25 17:25:07] 2025-11-25 22:24:35,478 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 17:25:07] 2025-11-25 22:24:35,478 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 17:25:07] 2025-11-25 22:24:35,512 | INFO     | did not find any defunct processes belonging to 3843539
[2025-11-25 17:25:07] 2025-11-25 22:24:35,542 | INFO     | did not find any defunct processes belonging to 3843539
[2025-11-25 17:25:07] 2025-11-25 22:24:35,544 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 17:25:07] 2025-11-25 22:24:35,544 | INFO     | ready for new job
[2025-11-25 17:25:07] 2025-11-25 22:24:35,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 17:25:07] 2025-11-25 22:24:35,549 | INFO     | ***************************************
[2025-11-25 17:25:07] 2025-11-25 22:24:35,550 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 17:25:07] 2025-11-25 22:24:35,550 | INFO     | ***************************************
[2025-11-25 17:25:07] 2025-11-25 22:24:35,550 | INFO     | 
[2025-11-25 17:25:07] 2025-11-25 22:24:35,555 | INFO     | architecture information:
[2025-11-25 17:25:07] 2025-11-25 22:24:35,556 | INFO     | executing command: cat /etc/os-release
[2025-11-25 17:25:07] 2025-11-25 22:24:35,621 | INFO     | cat /etc/os-release:
[2025-11-25 17:25:07] NAME="CentOS Linux"
[2025-11-25 17:25:07] VERSION="7 (Core)"
[2025-11-25 17:25:07] ID="centos"
[2025-11-25 17:25:07] ID_LIKE="rhel fedora"
[2025-11-25 17:25:07] VERSION_ID="7"
[2025-11-25 17:25:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 17:25:07] ANSI_COLOR="0;31"
[2025-11-25 17:25:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 17:25:07] HOME_URL="https://www.centos.org/"
[2025-11-25 17:25:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 17:25:07] 
[2025-11-25 17:25:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 17:25:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 17:25:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 17:25:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 17:25:07] 
[2025-11-25 17:25:07] 2025-11-25 22:24:35,622 | INFO     | ***************************************
[2025-11-25 17:25:07] 2025-11-25 22:24:36,125 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 17:25:07] 2025-11-25 22:24:36,217 | INFO     | sufficient remaining disk space (85754642432 B)
[2025-11-25 17:25:07] 2025-11-25 22:24:36,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 17:25:07] 2025-11-25 22:24:36,218 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 17:25:07] 2025-11-25 22:24:36,218 | INFO     | update_server=False
[2025-11-25 17:25:07] 2025-11-25 22:24:36,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 17:25:07] 2025-11-25 22:24:36,219 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 17:25:07] 2025-11-25 22:24:36,424 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 17:25:07] 2025-11-25 22:24:36,454 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 17:25:07] 2025-11-25 22:24:36,454 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 17:25:07] 2025-11-25 22:24:36,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:25:07] 2025-11-25 22:24:36,455 | INFO     | will abort loop
[2025-11-25 17:25:07] 2025-11-25 22:24:37,045 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 17:25:07] 2025-11-25 22:24:37,170 | INFO     | all data control threads have been joined
[2025-11-25 17:25:07] 2025-11-25 22:24:37,173 | INFO     | all job control threads have been joined
[2025-11-25 17:25:07] 2025-11-25 22:24:37,231 | INFO     | [job] retrieve thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:37,344 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:37,462 | INFO     | [job] job monitor thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:37,507 | INFO     | all payload control threads have been joined
[2025-11-25 17:25:07] 2025-11-25 22:24:37,635 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:37,968 | INFO     | [payload] validate_post thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,051 | INFO     | [job] queue monitor thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,176 | INFO     | [data] control thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,179 | INFO     | [job] control thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,217 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,387 | INFO     | [job] validate thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,412 | INFO     | [payload] failed_post thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,431 | INFO     | [data] copytool_out thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,526 | INFO     | [payload] control thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:38,603 | INFO     | [data] copytool_in thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:40,228 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 17:25:07] 2025-11-25 22:24:45,659 | INFO     | [monitor] cgroup control has ended
[2025-11-25 17:25:07] 2025-11-25 22:24:47,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139928641427264)>', '<ExcThread(monitor, started 139928004450048)>']
[2025-11-25 17:25:07] 2025-11-25 22:24:52,699 | INFO     | all workflow threads have been joined
[2025-11-25 17:25:07] 2025-11-25 22:24:52,699 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 17:25:07] 2025-11-25 22:24:52,700 | INFO     | traces error code: 0
[2025-11-25 17:25:07] 2025-11-25 22:24:52,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 17:25:07] 2025-11-25 22:25:05,738 | INFO     | PID=3829823 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 17:25:07] 2025-11-25 22:25:05,739 | INFO     | .. there are 95 such processes running
[2025-11-25 17:25:07] 2025-11-25 22:25:05,740 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 17:25:07] 2025-11-25 22:25:05,740 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 17:25:07] 2025-11-25 22:25:05,740 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 17:25:07] 2025-11-25 22:25:05,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 17:25:07] 2025-11-25 22:25:05,740 | INFO     | [monitor] control thread has ended
[2025-11-25 17:25:07] 2025-11-25 22:25:06,561 [wrapper] ==== pilot stdout END ====
[2025-11-25 17:25:07] 2025-11-25 22:25:06,606 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 17:25:07] 2025-11-25 22:25:06,624 [wrapper] pilotpid: 3829823
[2025-11-25 17:25:07] 2025-11-25 22:25:06,669 [wrapper] Pilot exit status: 0
[2025-11-25 17:25:07] 2025-11-25 22:25:06,823 [wrapper] pandaids: 6895366218
[2025-11-25 17:25:07] 2025-11-25 22:25:07,317 [wrapper] cleanup supervisor_pilot 1571311 3829824
[2025-11-25 17:25:07] 2025-11-25 22:25:07,350 [wrapper] Test setup, not cleaning
[2025-11-25 17:25:07] 2025-11-25 22:25:07,367 [wrapper] apfmon messages muted
[2025-11-25 17:25:07] 2025-11-25 22:25:07,376 [wrapper] ==== wrapper stdout END ====
[2025-11-25 17:25:07] 2025-11-25 22:25:07,395 [wrapper] ==== wrapper stderr END ====
[2025-11-25 17:25:07]  *** Error codes and diagnostics ***
[2025-11-25 17:25:08]     "exeErrorCode": 0,
[2025-11-25 17:25:08]     "exeErrorDiag": "",
[2025-11-25 17:25:08]     "pilotErrorCode": 0,
[2025-11-25 17:25:08]     "pilotErrorDiag": "",
[2025-11-25 17:25:08]  *** Listing of results directory ***
[2025-11-25 17:25:08] total 1310552
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 13:24 pilot3.tar.gz
[2025-11-25 17:25:08] -rwx------. 1 boincer umatlas     36292 Nov 23 13:26 runpilot2-wrapper.sh
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 13:26 queuedata.json
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas       100 Nov 24 22:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 17:25:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 22:45 run_atlas
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas       105 Nov 24 22:45 job.xml
[2025-11-25 17:25:08] -rw-r--r--. 2 boincer umatlas 407918956 Nov 24 22:45 EVNT.47483658._001182.pool.root.1
[2025-11-25 17:25:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 22:45 start_atlas.sh
[2025-11-25 17:25:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 22:45 shared
[2025-11-25 17:25:08] -rw-r--r--. 2 boincer umatlas    590108 Nov 24 22:45 input.tar.gz
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas         0 Nov 24 22:45 boinc_lockfile
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 22:45 pandaJob.out
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas        57 Nov 24 22:45 setup.sh.local
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas    991801 Nov 24 22:46 agis_schedconf.cvmfs.json
[2025-11-25 17:25:08] drwx------. 5 boincer umatlas      4096 Nov 24 22:46 pilot3
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas       533 Nov 25 17:00 boinc_task_state.xml
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas      6884 Nov 25 17:18 init_data.xml
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas 910280654 Nov 25 17:22 HITS.47556149._001684.pool.root.1
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas      1058 Nov 25 17:23 memory_monitor_summary.json
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas   1516240 Nov 25 17:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas   2364852 Nov 25 17:23 log.47556149._001684.job.log.tgz.1
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas      8622 Nov 25 17:24 heartbeat.json
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 17:25 boinc_mmap_file
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas       823 Nov 25 17:25 pilotlog.txt
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas        95 Nov 25 17:25 pilot_heartbeat.json
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas        29 Nov 25 17:25 wrapper_checkpoint.txt
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas   7576359 Nov 25 17:25 log.47556149._001684.job.log.1
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas       353 Nov 25 17:25 output.list
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas       620 Nov 25 17:25 runtime_log
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas   9963520 Nov 25 17:25 result.tar.gz
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas       660 Nov 25 17:25 XFYLDmjyTh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7fIKDmWajrXo.diag
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas      9345 Nov 25 17:25 runtime_log.err
[2025-11-25 17:25:08] -rw-r--r--. 1 boincer umatlas     21817 Nov 25 17:25 stderr.txt
[2025-11-25 17:25:08] HITS file was successfully produced:
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas 910280654 Nov 25 17:22 shared/HITS.pool.root.1
[2025-11-25 17:25:08]  *** Contents of shared directory: ***
[2025-11-25 17:25:08] total 1297644
[2025-11-25 17:25:08] -rw-r--r--. 2 boincer umatlas 407918956 Nov 24 22:45 ATLAS.root_0
[2025-11-25 17:25:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 22:45 start_atlas.sh
[2025-11-25 17:25:08] -rw-r--r--. 2 boincer umatlas    590108 Nov 24 22:45 input.tar.gz
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas 910280654 Nov 25 17:22 HITS.pool.root.1
[2025-11-25 17:25:08] -rw-------. 1 boincer umatlas   9963520 Nov 25 17:25 result.tar.gz
17:25:31 (3826029): run_atlas exited; CPU time 254611.620758
17:25:31 (3826029): called boinc_finish(0)

</stderr_txt>
]]>

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