Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:36:06 (21124): wrapper (7.7.26015): starting
21:36:06 (21124): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 21:36:06] Arguments: --nthreads 12
[2025-11-24 21:36:06] Threads: 12
[2025-11-24 21:36:06] Checking for CVMFS
[2025-11-24 21:36:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:36:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:36:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:36:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:36:06] 2.11.2.0 30551 115591 94296 153266 0 81 15801378 20275201 1 130560 0 51301949 99.916 6318300 28818 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 21:36:06] CVMFS is ok
[2025-11-24 21:36:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:36:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 21:36:06] Further information can be found at the LHC@home message board.
[2025-11-24 21:36:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:36:06] Checking for apptainer binary...
[2025-11-24 21:36:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:36:06] Running /usr/bin/apptainer --version
[2025-11-24 21:36:06] apptainer version 1.3.2-1.el7
[2025-11-24 21:36:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:36:08] c-205-16.aglt2.org
[2025-11-24 21:36:08] apptainer works
[2025-11-24 21:36:08] Set ATHENA_PROC_NUMBER=12
[2025-11-24 21:36:08] Set ATHENA_CORE_NUMBER=12
[2025-11-24 21:36:08] Starting ATLAS job with PandaID=6895365727
[2025-11-24 21:36:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:09:11 (1206): wrapper (7.7.26015): starting
22:09:11 (1206): wrapper: running run_atlas (--nthreads 12)
[2025-11-24 22:09:11] Arguments: --nthreads 12
[2025-11-24 22:09:11] Threads: 12
[2025-11-24 22:09:11] This job has been restarted, cleaning up previous attempt
[2025-11-24 22:09:11] Checking for CVMFS
[2025-11-24 22:09:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 22:09:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 22:09:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 22:09:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 22:09:12] 2.11.2.0 30551 115624 93164 153267 3 1 15838760 20275201 1 130560 0 51371325 99.916 6319610 28821 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 22:09:12] CVMFS is ok
[2025-11-24 22:09:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 22:09:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 22:09:12] Further information can be found at the LHC@home message board.
[2025-11-24 22:09:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 22:09:12] Checking for apptainer binary...
[2025-11-24 22:09:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 22:09:12] Running /usr/bin/apptainer --version
[2025-11-24 22:09:12] apptainer version 1.3.2-1.el7
[2025-11-24 22:09:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 22:09:13] c-205-16.aglt2.org
[2025-11-24 22:09:13] apptainer works
[2025-11-24 22:09:13] Set ATHENA_PROC_NUMBER=12
[2025-11-24 22:09:13] Set ATHENA_CORE_NUMBER=12
[2025-11-24 22:09:13] Starting ATLAS job with PandaID=6895365727
[2025-11-24 22:09:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:05:20]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:05:20] 2025-11-25 10:05:02,703 | INFO     | monitor loop #1868: job 0:6895365727 is in state 'finished'
[2025-11-25 05:05:20] 2025-11-25 10:05:02,703 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,185 | INFO     | time since job start (24937s) is within the limit (172800.0s)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,377 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 05:05:20] 2025-11-25 10:05:04,381 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-11-25 05:05:20] 2025-11-25 10:05:04,383 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895365727/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,384 | INFO     | extracted standard info from prmon json
[2025-11-25 05:05:20] 2025-11-25 10:05:04,384 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:05:20] 2025-11-25 10:05:04,384 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:05:20] 2025-11-25 10:05:04,391 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:05:20] 2025-11-25 10:05:04,391 | INFO     | sum of square deviations: 21215280214.024445
[2025-11-25 05:05:20] 2025-11-25 10:05:04,395 | INFO     | sum of deviations: 353103334535.354
[2025-11-25 05:05:20] 2025-11-25 10:05:04,395 | INFO     | mean x: 1764052641.163814
[2025-11-25 05:05:20] 2025-11-25 10:05:04,395 | INFO     | mean y: 3410408.8753056233
[2025-11-25 05:05:20] 2025-11-25 10:05:04,395 | INFO     | intersect: -29357166666.089523
[2025-11-25 05:05:20] 2025-11-25 10:05:04,396 | INFO     | chi2: 5.9185808738137
[2025-11-25 05:05:20] 2025-11-25 10:05:04,396 | INFO     | sum of square deviations: 20446709493.888485
[2025-11-25 05:05:20] 2025-11-25 10:05:04,400 | INFO     | sum of deviations: 513334006826.661
[2025-11-25 05:05:20] 2025-11-25 10:05:04,400 | INFO     | mean x: 1764052488.6658416
[2025-11-25 05:05:20] 2025-11-25 10:05:04,400 | INFO     | mean y: 3442166.9826732674
[2025-11-25 05:05:20] 2025-11-25 10:05:04,400 | INFO     | intersect: -44284766286.805336
[2025-11-25 05:05:20] 2025-11-25 10:05:04,400 | INFO     | chi2: 2.7203850997731007
[2025-11-25 05:05:20] 2025-11-25 10:05:04,401 | INFO     | current chi2=2.7203850997731007 (change=54.03653075335622 %)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,401 | INFO     | sum of square deviations: 19696905423.082706
[2025-11-25 05:05:20] 2025-11-25 10:05:04,404 | INFO     | sum of deviations: 547098871711.87195
[2025-11-25 05:05:20] 2025-11-25 10:05:04,405 | INFO     | mean x: 1764052336.1654136
[2025-11-25 05:05:20] 2025-11-25 10:05:04,405 | INFO     | mean y: 3448980.7443609023
[2025-11-25 05:05:20] 2025-11-25 10:05:04,405 | INFO     | intersect: -48994656154.37908
[2025-11-25 05:05:20] 2025-11-25 10:05:04,405 | INFO     | chi2: 2.324190186766319
[2025-11-25 05:05:20] 2025-11-25 10:05:04,405 | INFO     | current chi2=2.324190186766319 (change=14.563927476291028 %)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,406 | INFO     | right removable region: 398
[2025-11-25 05:05:20] 2025-11-25 10:05:04,406 | INFO     | sum of square deviations: 20446668623.888493
[2025-11-25 05:05:20] 2025-11-25 10:05:04,410 | INFO     | sum of deviations: 229125455852.70795
[2025-11-25 05:05:20] 2025-11-25 10:05:04,410 | INFO     | mean x: 1764052793.6658416
[2025-11-25 05:05:20] 2025-11-25 10:05:04,410 | INFO     | mean y: 3434915.123762376
[2025-11-25 05:05:20] 2025-11-25 10:05:04,410 | INFO     | intersect: -19764548218.554142
[2025-11-25 05:05:20] 2025-11-25 10:05:04,410 | INFO     | chi2: 3.793529951819722
[2025-11-25 05:05:20] 2025-11-25 10:05:04,411 | INFO     | current chi2=3.793529951819722 (change=35.904737424406925 %)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,411 | INFO     | sum of square deviations: 19696848083.74936
[2025-11-25 05:05:20] 2025-11-25 10:05:04,414 | INFO     | sum of deviations: 195226597392.99487
[2025-11-25 05:05:20] 2025-11-25 10:05:04,415 | INFO     | mean x: 1764052946.1679199
[2025-11-25 05:05:20] 2025-11-25 10:05:04,415 | INFO     | mean y: 3441807.343358396
[2025-11-25 05:05:20] 2025-11-25 10:05:04,415 | INFO     | intersect: -17481084287.24462
[2025-11-25 05:05:20] 2025-11-25 10:05:04,415 | INFO     | chi2: 3.7313410020912983
[2025-11-25 05:05:20] 2025-11-25 10:05:04,415 | INFO     | current chi2=3.7313410020912983 (change=1.6393425257810956 %)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,416 | INFO     | left removable region: 20
[2025-11-25 05:05:20] 2025-11-25 10:05:04,416 | INFO     | sum of square deviations: 16747641645.322805
[2025-11-25 05:05:20] 2025-11-25 10:05:04,419 | INFO     | sum of deviations: 334650648513.0793
[2025-11-25 05:05:20] 2025-11-25 10:05:04,419 | INFO     | mean x: 1764052915.6719577
[2025-11-25 05:05:20] 2025-11-25 10:05:04,419 | INFO     | mean y: 3493238.4603174604
[2025-11-25 05:05:20] 2025-11-25 10:05:04,420 | INFO     | intersect: -35245735563.00956
[2025-11-25 05:05:20] 2025-11-25 10:05:04,420 | INFO     | chi2: 0.05858577397918103
[2025-11-25 05:05:20] 2025-11-25 10:05:04,420 | INFO     | current memory leak: 19.98 B/s (using 378 data points, chi2=0.06)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,420 | INFO     | could have reported an average CPU frequency of 2403 MHz (17 samples)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | ..............................
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . Timing measurements:
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . get job = 0 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . initial setup = 1 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . payload setup = 7 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . stage-in = 0 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . payload execution = 24897 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . stage-out = 3 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,421 | INFO     | . log creation = 0 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,422 | INFO     | ..............................
[2025-11-25 05:05:20] 2025-11-25 10:05:04,504 | INFO     | 
[2025-11-25 05:05:20] 2025-11-25 10:05:04,504 | INFO     | job summary report
[2025-11-25 05:05:20] 2025-11-25 10:05:04,505 | INFO     | --------------------------------------------------
[2025-11-25 05:05:20] 2025-11-25 10:05:04,505 | INFO     | PanDA job id: 6895365727
[2025-11-25 05:05:20] 2025-11-25 10:05:04,505 | INFO     | task id: 47556137
[2025-11-25 05:05:20] 2025-11-25 10:05:04,505 | INFO     | errors: (none)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,505 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:05:20] 2025-11-25 10:05:04,505 | INFO     | pilot state: finished 
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | transexitcode: 0
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | exeerrorcode: 0
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | exeerrordiag: 
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | exitcode: 0
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | exitmsg: OK
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | cpuconsumptiontime: 285707 s
[2025-11-25 05:05:20] 2025-11-25 10:05:04,506 | INFO     | nevents: 1000
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | neventsw: 0
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | pid: 11483
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | pgrp: 11483
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | corecount: 12
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | event service: False
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | sizes: {0: 2284309, 5: 2284571, 11: 2284627, 24909: 2321468, 24914: 2330467, 24915: 2330551, 24921: 2330989}
[2025-11-25 05:05:20] 2025-11-25 10:05:04,507 | INFO     | --------------------------------------------------
[2025-11-25 05:05:20] 2025-11-25 10:05:04,508 | INFO     | 
[2025-11-25 05:05:20] 2025-11-25 10:05:04,508 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-25 05:05:20] 2025-11-25 10:05:04,532 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,533 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,533 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,533 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,534 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,535 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,535 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,535 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,535 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,535 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,535 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,536 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:05:20] 2025-11-25 10:05:04,536 | INFO     | job 6895365727 has completed (purged errors)
[2025-11-25 05:05:20] 2025-11-25 10:05:04,536 | INFO     | overall cleanup function is called
[2025-11-25 05:05:20] 2025-11-25 10:05:05,307 | INFO     | PID=5112 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-25 05:05:20] 2025-11-25 10:05:05,553 | INFO     | --- collectZombieJob: --- 10, [11483]
[2025-11-25 05:05:20] 2025-11-25 10:05:05,553 | INFO     | zombie collector waiting for pid 11483
[2025-11-25 05:05:20] 2025-11-25 10:05:05,553 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:05:20] 2025-11-25 10:05:05,553 | INFO     | collected zombie processes
[2025-11-25 05:05:20] 2025-11-25 10:05:05,553 | INFO     | will attempt to kill all subprocesses of pid=11483
[2025-11-25 05:05:20] 2025-11-25 10:05:05,647 | INFO     | process IDs to be killed: [11483] (in reverse order)
[2025-11-25 05:05:20] 2025-11-25 10:05:05,698 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:05:20] 2025-11-25 10:05:05,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:05:20] 2025-11-25 10:05:05,703 | INFO     | did not find any defunct processes belonging to 11483
[2025-11-25 05:05:20] 2025-11-25 10:05:05,705 | INFO     | did not find any defunct processes belonging to 11483
[2025-11-25 05:05:20] 2025-11-25 10:05:05,707 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:05:20] 2025-11-25 10:05:05,707 | INFO     | ready for new job
[2025-11-25 05:05:20] 2025-11-25 10:05:05,707 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:05:20] 2025-11-25 10:05:05,709 | INFO     | ***************************************
[2025-11-25 05:05:20] 2025-11-25 10:05:05,709 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:05:20] 2025-11-25 10:05:05,709 | INFO     | ***************************************
[2025-11-25 05:05:20] 2025-11-25 10:05:05,709 | INFO     | 
[2025-11-25 05:05:20] 2025-11-25 10:05:05,710 | INFO     | architecture information:
[2025-11-25 05:05:20] 2025-11-25 10:05:05,711 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:05:20] 2025-11-25 10:05:05,726 | INFO     | cat /etc/os-release:
[2025-11-25 05:05:20] NAME="CentOS Linux"
[2025-11-25 05:05:20] VERSION="7 (Core)"
[2025-11-25 05:05:20] ID="centos"
[2025-11-25 05:05:20] ID_LIKE="rhel fedora"
[2025-11-25 05:05:20] VERSION_ID="7"
[2025-11-25 05:05:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:05:20] ANSI_COLOR="0;31"
[2025-11-25 05:05:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:05:20] HOME_URL="https://www.centos.org/"
[2025-11-25 05:05:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:05:20] 
[2025-11-25 05:05:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:05:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:05:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:05:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:05:20] 
[2025-11-25 05:05:20] 2025-11-25 10:05:05,726 | INFO     | ***************************************
[2025-11-25 05:05:20] 2025-11-25 10:05:06,227 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-25 05:05:20] 2025-11-25 10:05:06,244 | INFO     | sufficient remaining disk space (28406972416 B)
[2025-11-25 05:05:20] 2025-11-25 10:05:06,245 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:05:20] 2025-11-25 10:05:06,245 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:05:20] 2025-11-25 10:05:06,245 | INFO     | update_server=False
[2025-11-25 05:05:20] 2025-11-25 10:05:06,245 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:05:20] 2025-11-25 10:05:06,246 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:05:20] 2025-11-25 10:05:06,246 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-25 05:05:20] 2025-11-25 10:05:06,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:05:20] 2025-11-25 10:05:06,246 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:05:20] 2025-11-25 10:05:06,247 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:05:20] 2025-11-25 10:05:06,247 | INFO     | aborting loop
[2025-11-25 05:05:20] 2025-11-25 10:05:06,248 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:05:20] 2025-11-25 10:05:06,248 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:05:20] 2025-11-25 10:05:06,385 | INFO     | all data control threads have been joined
[2025-11-25 05:05:20] 2025-11-25 10:05:07,048 | INFO     | all payload control threads have been joined
[2025-11-25 05:05:20] 2025-11-25 10:05:07,250 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:07,252 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:07,253 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:07,390 | INFO     | [data] control thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:07,493 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:05:20] 2025-11-25 10:05:07,731 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:07,784 | INFO     | all job control threads have been joined
[2025-11-25 05:05:20] 2025-11-25 10:05:08,036 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,053 | INFO     | [payload] control thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,184 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,252 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,533 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,549 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,568 | INFO     | [job] validate thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,635 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,664 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:08,786 | INFO     | [job] control thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:09,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:05:20] 2025-11-25 10:05:13,314 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:05:20] 2025-11-25 10:05:14,829 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116248127296)>', '<ExcThread(monitor, started 140115372398336)>']
[2025-11-25 05:05:20] 2025-11-25 10:05:15,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:05:20] 2025-11-25 10:05:15,291 | INFO     | [monitor] control thread has ended
[2025-11-25 05:05:20] 2025-11-25 10:05:19,845 | INFO     | all workflow threads have been joined
[2025-11-25 05:05:20] 2025-11-25 10:05:19,845 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:05:20] 2025-11-25 10:05:19,880 | INFO     | traces error code: 0
[2025-11-25 05:05:20] 2025-11-25 10:05:19,880 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:05:20] 2025-11-25 10:05:19,971 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:05:20] 2025-11-25 10:05:19,975 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:05:20] 2025-11-25 10:05:19,979 [wrapper] pilotpid: 5112
[2025-11-25 05:05:20] 2025-11-25 10:05:19,983 [wrapper] Pilot exit status: 0
[2025-11-25 05:05:20] 2025-11-25 10:05:19,997 [wrapper] pandaids: 6895365727 6895365727
[2025-11-25 05:05:20] 2025-11-25 10:05:20,036 [wrapper] cleanup supervisor_pilot  6542 5113
[2025-11-25 05:05:20] 2025-11-25 10:05:20,040 [wrapper] Test setup, not cleaning
[2025-11-25 05:05:20] 2025-11-25 10:05:20,044 [wrapper] apfmon messages muted
[2025-11-25 05:05:20] 2025-11-25 10:05:20,048 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:05:20] 2025-11-25 10:05:20,051 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:05:20]  *** Error codes and diagnostics ***
[2025-11-25 05:05:20]     "exeErrorCode": 0,
[2025-11-25 05:05:20]     "exeErrorDiag": "",
[2025-11-25 05:05:20]     "pilotErrorCode": 0,
[2025-11-25 05:05:20]     "pilotErrorDiag": "",
[2025-11-25 05:05:20]  *** Listing of results directory ***
[2025-11-25 05:05:20] total 1693560
[2025-11-25 05:05:20] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 12:44 queuedata.json
[2025-11-25 05:05:20] -rwx------ 1 boincer umatlas     36292 Nov 23 12:45 runpilot2-wrapper.sh
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas       100 Nov 24 21:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:05:20] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 21:36 run_atlas
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas       105 Nov 24 21:36 job.xml
[2025-11-25 05:05:20] -rw-r--r-- 3 boincer umatlas 411180650 Nov 24 21:36 EVNT.47483658._000830.pool.root.1
[2025-11-25 05:05:20] -rw-r--r-- 3 boincer umatlas 411180650 Nov 24 21:36 ATLAS.root_0
[2025-11-25 05:05:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 21:36 start_atlas.sh
[2025-11-25 05:05:20] drwxrwx--x 2 boincer umatlas      4096 Nov 24 21:36 shared
[2025-11-25 05:05:20] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 21:36 input.tar.gz
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas         0 Nov 24 21:36 boinc_lockfile
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas      2785 Nov 24 22:09 pandaJob.out
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas        57 Nov 24 22:09 setup.sh.local
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas    991801 Nov 24 22:09 agis_schedconf.cvmfs.json
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas       532 Nov 25 04:56 boinc_task_state.xml
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas 896571133 Nov 25 05:04 HITS.47556137._008170.pool.root.1
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas        96 Nov 25 05:04 pilot_heartbeat.json
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas      1061 Nov 25 05:04 memory_monitor_summary.json
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas      5955 Nov 25 05:04 init_data.xml
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas   1516240 Nov 25 05:04 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas   2162865 Nov 25 05:04 log.47556137._008170.job.log.tgz.1
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas      8668 Nov 25 05:05 heartbeat.json
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 05:05 boinc_mmap_file
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas        29 Nov 25 05:05 wrapper_checkpoint.txt
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas      4552 Nov 25 05:05 pilotlog.txt
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas   3506428 Nov 25 05:05 log.47556137._008170.job.log.1
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas       353 Nov 25 05:05 output.list
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas       620 Nov 25 05:05 runtime_log
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas   5693440 Nov 25 05:05 result.tar.gz
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas       795 Nov 25 05:05 S5INDmeKTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmf4KKDm9fQtGo.diag
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas      9430 Nov 25 05:05 runtime_log.err
[2025-11-25 05:05:20] -rw-r--r-- 1 boincer umatlas     23502 Nov 25 05:05 stderr.txt
[2025-11-25 05:05:20] HITS file was successfully produced:
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas 896571133 Nov 25 05:04 shared/HITS.pool.root.1
[2025-11-25 05:05:20]  *** Contents of shared directory: ***
[2025-11-25 05:05:20] total 1283268
[2025-11-25 05:05:20] -rw-r--r-- 3 boincer umatlas 411180650 Nov 24 21:36 ATLAS.root_0
[2025-11-25 05:05:20] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 21:36 start_atlas.sh
[2025-11-25 05:05:20] -rw-r--r-- 2 boincer umatlas    590095 Nov 24 21:36 input.tar.gz
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas 896571133 Nov 25 05:04 HITS.pool.root.1
[2025-11-25 05:05:20] -rw------- 1 boincer umatlas   5693440 Nov 25 05:05 result.tar.gz
05:05:22 (1206): run_atlas exited; CPU time 279053.269658
05:05:22 (1206): called boinc_finish(0)

</stderr_txt>
]]>

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