Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:13:57 (2809257): wrapper (7.7.26015): starting
04:13:57 (2809257): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 04:13:57] Arguments: --nthreads 3
[2025-11-25 04:13:57] Threads: 3
[2025-11-25 04:13:57] Checking for CVMFS
[2025-11-25 04:13:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 04:13:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 04:13:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 04:13:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 04:13:57] 2.9.2.0 2683671 26 54400 153267 1 16 35093411 36864000 0 130560 0 375640 99.999 2588 26408 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 04:13:57] CVMFS is ok
[2025-11-25 04:13:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 04:13:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 04:13:57] Further information can be found at the LHC@home message board.
[2025-11-25 04:13:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 04:13:57] Checking for apptainer binary...
[2025-11-25 04:13:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 04:13:57] Running /usr/bin/apptainer --version
[2025-11-25 04:13:57] apptainer version 1.4.1-1.1
[2025-11-25 04:13:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 04:13:58] thA335
[2025-11-25 04:13:58] apptainer works
[2025-11-25 04:13:58] Set ATHENA_PROC_NUMBER=3
[2025-11-25 04:13:58] Set ATHENA_CORE_NUMBER=3
[2025-11-25 04:13:58] Starting ATLAS job with PandaID=6893850215
[2025-11-25 04:13:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 04:18:15]  *** The last 200 lines of the pilot log: ***
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | INFO     | update_server=False
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 04:18:15] 2025-11-25 03:17:27,585 | INFO     | aborting loop
[2025-11-25 04:18:15] 2025-11-25 03:17:27,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 04:18:15] 2025-11-25 03:17:28,115 | INFO     | all job control threads have been joined
[2025-11-25 04:18:15] 2025-11-25 03:17:28,222 | INFO     | all data control threads have been joined
[2025-11-25 04:18:15] 2025-11-25 03:17:28,590 | INFO     | [job] retrieve thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:28,591 | INFO     | [job] job monitor thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:28,592 | INFO     | [job] queue monitor thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:28,645 | INFO     | all payload control threads have been joined
[2025-11-25 04:18:15] 2025-11-25 03:17:29,121 | INFO     | [job] control thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,229 | INFO     | [data] control thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,327 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,521 | INFO     | [payload] validate_post thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,597 | INFO     | [job] validate thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,651 | INFO     | [payload] control thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,682 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,741 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,977 | INFO     | [data] copytool_in thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:29,979 | INFO     | [data] copytool_out thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:30,098 | INFO     | [payload] failed_post thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:30,280 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 04:18:15] 2025-11-25 03:17:34,287 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 04:18:15] 2025-11-25 03:17:57,336 | INFO     | PID=2812978 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 04:18:15] 2025-11-25 03:17:57,336 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 04:18:15] 2025-11-25 03:17:57,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 04:18:15] 2025-11-25 03:17:57,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 04:18:15] 2025-11-25 03:18:08,329 | INFO     | [monitor] cgroup control has ended
[2025-11-25 04:18:15] 2025-11-25 03:18:10,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140244776490816)>', '<ExcThread(monitor, started 140244280133376)>']
[2025-11-25 04:18:15] 2025-11-25 03:18:10,401 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 04:18:15] 2025-11-25 03:18:10,401 | INFO     | [monitor] control thread has ended
[2025-11-25 04:18:15] 2025-11-25 03:18:15,166 | INFO     | all workflow threads have been joined
[2025-11-25 04:18:15] 2025-11-25 03:18:15,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 04:18:15] 2025-11-25 03:18:15,167 | INFO     | traces error code: 0
[2025-11-25 04:18:15] 2025-11-25 03:18:15,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 04:18:15] 2025-11-25 03:18:15,217 [wrapper] ==== pilot stdout END ====
[2025-11-25 04:18:15] 2025-11-25 03:18:15,220 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 04:18:15] 2025-11-25 03:18:15,223 [wrapper] pilotpid: 2812978
[2025-11-25 04:18:15] 2025-11-25 03:18:15,226 [wrapper] Pilot exit status: 0
[2025-11-25 04:18:15] 2025-11-25 03:18:15,233 [wrapper] pandaids: 6893850215
[2025-11-25 04:18:15] 2025-11-25 03:18:15,248 [wrapper] cleanup supervisor_pilot 2812984 2812979
[2025-11-25 04:18:15] 2025-11-25 03:18:15,251 [wrapper] Test setup, not cleaning
[2025-11-25 04:18:15] 2025-11-25 03:18:15,254 [wrapper] apfmon messages muted
[2025-11-25 04:18:15] 2025-11-25 03:18:15,256 [wrapper] ==== wrapper stdout END ====
[2025-11-25 04:18:15] 2025-11-25 03:18:15,258 [wrapper] ==== wrapper stderr END ====
[2025-11-25 04:18:15]  *** Error codes and diagnostics ***
[2025-11-25 04:18:15]     "exeErrorCode": 65,
[2025-11-25 04:18:15]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 04:18:15]     "pilotErrorCode": 1305,
[2025-11-25 04:18:15]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 04:18:15]  *** Listing of results directory ***
[2025-11-25 04:18:15] total 405080
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc    576529 Nov 20 12:09 pilot3.tar.gz
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc      5112 Nov 20 12:15 queuedata.json
[2025-11-25 04:18:15] -rwx------ 1 boinc boinc     36292 Nov 20 12:15 runpilot2-wrapper.sh
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc       100 Nov 25 04:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 04:18:15] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 04:13 run_atlas
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc       105 Nov 25 04:13 job.xml
[2025-11-25 04:18:15] -rw-r--r-- 2 boinc boinc 410611580 Nov 25 04:13 EVNT.47493127._000320.pool.root.1
[2025-11-25 04:18:15] -rw-r--r-- 2 boinc boinc    590105 Nov 25 04:13 input.tar.gz
[2025-11-25 04:18:15] -rw-r--r-- 2 boinc boinc     15847 Nov 25 04:13 start_atlas.sh
[2025-11-25 04:18:15] drwxrwx--x 2 boinc boinc      4096 Nov 25 04:13 shared
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc         0 Nov 25 04:13 boinc_setup_complete
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc      6196 Nov 25 04:13 init_data.xml
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc         0 Nov 25 04:13 boinc_lockfile
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc      2785 Nov 25 04:13 pandaJob.out
[2025-11-25 04:18:15] -rw------- 1 boinc boinc    991801 Nov 25 04:14 agis_schedconf.cvmfs.json
[2025-11-25 04:18:15] -rw------- 1 boinc boinc   1516227 Nov 25 04:14 agis_ddmendpoints.agis.ALL.json
[2025-11-25 04:18:15] drwx------ 5 boinc boinc      4096 Nov 25 04:14 pilot3
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc       523 Nov 25 04:15 boinc_task_state.xml
[2025-11-25 04:18:15] -rw------- 1 boinc boinc       960 Nov 25 04:15 memory_monitor_summary.json
[2025-11-25 04:18:15] -rw------- 1 boinc boinc     56400 Nov 25 04:15 log.47523449._003197.job.log.tgz.1
[2025-11-25 04:18:15] -rw------- 1 boinc boinc        95 Nov 25 04:17 pilot_heartbeat.json
[2025-11-25 04:18:15] -rw------- 1 boinc boinc      8400 Nov 25 04:17 heartbeat.json
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc        23 Nov 25 04:18 wrapper_checkpoint.txt
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc      8192 Nov 25 04:18 boinc_mmap_file
[2025-11-25 04:18:15] -rw------- 1 boinc boinc      4752 Nov 25 04:18 pilotlog.txt
[2025-11-25 04:18:15] -rw------- 1 boinc boinc     93690 Nov 25 04:18 log.47523449._003197.job.log.1
[2025-11-25 04:18:15] -rw------- 1 boinc boinc       186 Nov 25 04:18 output.list
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc       620 Nov 25 04:18 runtime_log
[2025-11-25 04:18:15] -rw------- 1 boinc boinc    174080 Nov 25 04:18 result.tar.gz
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc      8744 Nov 25 04:18 runtime_log.err
[2025-11-25 04:18:15] -rw------- 1 boinc boinc       648 Nov 25 04:18 4rTMDmioHg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhbHKDmzSjIOo.diag
[2025-11-25 04:18:15] -rw-r--r-- 1 boinc boinc      8016 Nov 25 04:18 stderr.txt
[2025-11-25 04:18:15] No HITS result produced
[2025-11-25 04:18:15]  *** Contents of shared directory: ***
[2025-11-25 04:18:15] total 401756
[2025-11-25 04:18:15] -rw-r--r-- 2 boinc boinc 410611580 Nov 25 04:13 ATLAS.root_0
[2025-11-25 04:18:15] -rw-r--r-- 2 boinc boinc    590105 Nov 25 04:13 input.tar.gz
[2025-11-25 04:18:15] -rw-r--r-- 2 boinc boinc     15847 Nov 25 04:13 start_atlas.sh
[2025-11-25 04:18:15] -rw------- 1 boinc boinc    174080 Nov 25 04:18 result.tar.gz
04:18:16 (2809257): run_atlas exited; CPU time 31.931882
04:18:16 (2809257): called boinc_finish(0)

</stderr_txt>
]]>

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