Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:05 (4103441): wrapper (7.7.26015): starting
00:00:05 (4103441): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:00:05] Arguments: --nthreads 12
[2025-11-25 00:00:05] Threads: 12
[2025-11-25 00:00:05] Checking for CVMFS
[2025-11-25 00:00:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:06] 2.13.2.0 6902 33223 237736 153270 2 489 21326600 40960001 25314 16776704 0 111445149 99.601 117948741 40153 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:00:06] CVMFS is ok
[2025-11-25 00:00:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:06] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:06] Checking for apptainer binary...
[2025-11-25 00:00:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:06] Running /usr/bin/apptainer --version
[2025-11-25 00:00:06] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:06] c-212-6.aglt2.org
[2025-11-25 00:00:06] apptainer works
[2025-11-25 00:00:06] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:00:06] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:00:06] Starting ATLAS job with PandaID=6895382880
[2025-11-25 00:00:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:20:11 (4103441): BOINC client no longer exists - exiting
19:20:11 (4103441): timer handler: client dead, exiting
19:28:42 (3739499): wrapper (7.7.26015): starting
19:28:42 (3739499): wrapper: running run_atlas (--nthreads 11)
[2025-11-25 19:28:42] Arguments: --nthreads 11
[2025-11-25 19:28:42] Threads: 11
[2025-11-25 19:28:42] This job has been restarted, cleaning up previous attempt
[2025-11-25 19:28:42] Checking for CVMFS
[2025-11-25 19:28:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 19:28:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 19:28:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 19:28:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 19:28:42] 2.13.2.0 6902 34392 216088 153303 0 160 35058876 40960001 21467 16776704 0 117282471 99.606 122086529 39922 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 19:28:42] CVMFS is ok
[2025-11-25 19:28:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 19:28:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 19:28:42] Further information can be found at the LHC@home message board.
[2025-11-25 19:28:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 19:28:42] Checking for apptainer binary...
[2025-11-25 19:28:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 19:28:42] Running /usr/bin/apptainer --version
[2025-11-25 19:28:42] apptainer version 1.4.4-1.el9
[2025-11-25 19:28:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 19:28:43] c-212-6.aglt2.org
[2025-11-25 19:28:43] apptainer works
[2025-11-25 19:28:43] Set ATHENA_PROC_NUMBER=11
[2025-11-25 19:28:43] Set ATHENA_CORE_NUMBER=11
[2025-11-25 19:28:43] Starting ATLAS job with PandaID=6895382880
[2025-11-25 19:28:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:58:54]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:58:54] 2025-11-27 01:57:39,716 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 20:58:54] 2025-11-27 01:57:40,969 | INFO     | time since job start (91725s) is within the limit (172800.0s)
[2025-11-26 20:58:54] 2025-11-27 01:57:41,915 | INFO     | monitor loop #5127: job 0:6895382880 is in state 'finished'
[2025-11-26 20:58:54] 2025-11-27 01:57:41,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:58:54] 2025-11-27 01:57:42,976 | INFO     | time since job start (91727s) is within the limit (172800.0s)
[2025-11-26 20:58:54] 2025-11-27 01:57:44,420 | INFO     | monitor loop #5128: job 0:6895382880 is in state 'finished'
[2025-11-26 20:58:54] 2025-11-27 01:57:44,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:58:54] 2025-11-27 01:57:44,983 | INFO     | time since job start (91729s) is within the limit (172800.0s)
[2025-11-26 20:58:54] 2025-11-27 01:57:46,924 | INFO     | monitor loop #5129: job 0:6895382880 is in state 'finished'
[2025-11-26 20:58:54] 2025-11-27 01:57:46,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:58:54] 2025-11-27 01:57:46,996 | INFO     | time since job start (91731s) is within the limit (172800.0s)
[2025-11-26 20:58:54] 2025-11-27 01:57:49,006 | INFO     | time since job start (91734s) is within the limit (172800.0s)
[2025-11-26 20:58:54] 2025-11-27 01:57:49,435 | INFO     | monitor loop #5130: job 0:6895382880 is in state 'finished'
[2025-11-26 20:58:54] 2025-11-27 01:57:49,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:58:54] 2025-11-27 01:57:51,032 | INFO     | time since job start (91736s) is within the limit (172800.0s)
[2025-11-26 20:58:54] 2025-11-27 01:57:51,367 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:58:54] 2025-11-27 01:57:51,372 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3076.7841249999988
[2025-11-26 20:58:54] 2025-11-27 01:57:51,421 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6895382880/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:58:54] 2025-11-27 01:57:51,422 | INFO     | extracted standard info from prmon json
[2025-11-26 20:58:54] 2025-11-27 01:57:51,422 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:58:54] 2025-11-27 01:57:51,422 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:58:54] 2025-11-27 01:57:51,462 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:58:54] 2025-11-27 01:57:51,464 | INFO     | sum of square deviations: 1052780852475.3815
[2025-11-26 20:58:54] 2025-11-27 01:57:51,640 | INFO     | sum of deviations: 2258210858908.674
[2025-11-26 20:58:54] 2025-11-27 01:57:51,640 | INFO     | mean x: 1764162780.5156355
[2025-11-26 20:58:54] 2025-11-27 01:57:51,640 | INFO     | mean y: 3312698.737192282
[2025-11-26 20:58:54] 2025-11-27 01:57:51,640 | INFO     | intersect: -3780809645.8854146
[2025-11-26 20:58:54] 2025-11-27 01:57:51,642 | INFO     | chi2: 20.732691465748594
[2025-11-26 20:58:54] 2025-11-27 01:57:51,643 | INFO     | sum of square deviations: 1042310165355.8783
[2025-11-26 20:58:54] 2025-11-27 01:57:51,908 | INFO     | sum of deviations: 2815276663506.55
[2025-11-26 20:58:54] 2025-11-27 01:57:51,909 | INFO     | mean x: 1764162628.0273697
[2025-11-26 20:58:54] 2025-11-27 01:57:51,909 | INFO     | mean y: 3320811.4499332444
[2025-11-26 20:58:54] 2025-11-27 01:57:51,909 | INFO     | intersect: -4761677211.590628
[2025-11-26 20:58:54] 2025-11-27 01:57:51,910 | INFO     | chi2: 17.661263424540014
[2025-11-26 20:58:54] 2025-11-27 01:57:51,910 | INFO     | current chi2=17.661263424540014 (change=14.8144202419774 %)
[2025-11-26 20:58:54] 2025-11-27 01:57:51,910 | INFO     | right removable region: 1497
[2025-11-26 20:58:54] 2025-11-27 01:57:51,932 | INFO     | sum of square deviations: 1042307125127.9852
[2025-11-26 20:58:54] 2025-11-27 01:57:51,958 | INFO     | monitor loop #5131: job 0:6895382880 is in state 'finished'
[2025-11-26 20:58:54] 2025-11-27 01:57:51,958 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,184 | INFO     | sum of deviations: 1809669707713.1528
[2025-11-26 20:58:54] 2025-11-27 01:57:52,184 | INFO     | mean x: 1764162933.0260348
[2025-11-26 20:58:54] 2025-11-27 01:57:52,184 | INFO     | mean y: 3319223.7396528707
[2025-11-26 20:58:54] 2025-11-27 01:57:52,184 | INFO     | intersect: -3059647671.9107904
[2025-11-26 20:58:54] 2025-11-27 01:57:52,185 | INFO     | chi2: 18.66336581800495
[2025-11-26 20:58:54] 2025-11-27 01:57:52,185 | INFO     | current chi2=18.66336581800495 (change=9.98097932032736 %)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,186 | INFO     | left removable region: 10
[2025-11-26 20:58:54] 2025-11-27 01:57:52,203 | INFO     | sum of square deviations: 1019513776296.215
[2025-11-26 20:58:54] 2025-11-27 01:57:52,286 | INFO     | sum of deviations: 2361015461496.812
[2025-11-26 20:58:54] 2025-11-27 01:57:52,286 | INFO     | mean x: 1764162902.548756
[2025-11-26 20:58:54] 2025-11-27 01:57:52,286 | INFO     | mean y: 3330742.5749831875
[2025-11-26 20:58:54] 2025-11-27 01:57:52,287 | INFO     | intersect: -4082161760.1830397
[2025-11-26 20:58:54] 2025-11-27 01:57:52,288 | INFO     | chi2: 14.906986903762455
[2025-11-26 20:58:54] 2025-11-27 01:57:52,288 | INFO     | current memory leak: 2.32 B/s (using 1487 data points, chi2=14.91)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,289 | INFO     | could have reported an average CPU frequency of 3091 MHz (53 samples)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | ..............................
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . Timing measurements:
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . get job = 0 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . initial setup = 2 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . payload setup = 7 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . stage-in = 0 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . payload execution = 91686 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . stage-out = 6 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | . log creation = 1 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,290 | INFO     | ..............................
[2025-11-26 20:58:54] 2025-11-27 01:57:52,370 | INFO     | 
[2025-11-26 20:58:54] 2025-11-27 01:57:52,370 | INFO     | job summary report
[2025-11-26 20:58:54] 2025-11-27 01:57:52,370 | INFO     | --------------------------------------------------
[2025-11-26 20:58:54] 2025-11-27 01:57:52,370 | INFO     | PanDA job id: 6895382880
[2025-11-26 20:58:54] 2025-11-27 01:57:52,370 | INFO     | task id: 47556137
[2025-11-26 20:58:54] 2025-11-27 01:57:52,370 | INFO     | errors: (none)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | pilot state: finished 
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | transexitcode: 0
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | exeerrorcode: 0
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | exeerrordiag: 
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | exitcode: 0
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | exitmsg: OK
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | cpuconsumptiontime: 205761 s
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | nevents: 1000
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | neventsw: 0
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | pid: 3789183
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | pgrp: 3789183
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | corecount: 11
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | event service: False
[2025-11-26 20:58:54] 2025-11-27 01:57:52,371 | INFO     | sizes: {0: 2284314, 1: 2284314, 5: 2284604, 11: 2284660, 91697: 2352086, 91698: 2352085, 91705: 2361263, 91708: 2361319, 91721: 2361661}
[2025-11-26 20:58:54] 2025-11-27 01:57:52,372 | INFO     | --------------------------------------------------
[2025-11-26 20:58:54] 2025-11-27 01:57:52,372 | INFO     | 
[2025-11-26 20:58:54] 2025-11-27 01:57:52,372 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 20:58:54] 2025-11-27 01:57:52,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | job 6895382880 has completed (purged errors)
[2025-11-26 20:58:54] 2025-11-27 01:57:52,395 | INFO     | overall cleanup function is called
[2025-11-26 20:58:54] 2025-11-27 01:57:53,419 | INFO     | --- collectZombieJob: --- 10, [3789183]
[2025-11-26 20:58:54] 2025-11-27 01:57:53,419 | INFO     | zombie collector waiting for pid 3789183
[2025-11-26 20:58:54] 2025-11-27 01:57:53,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:58:54] 2025-11-27 01:57:53,419 | INFO     | collected zombie processes
[2025-11-26 20:58:54] 2025-11-27 01:57:53,419 | INFO     | will attempt to kill all subprocesses of pid=3789183
[2025-11-26 20:58:54] 2025-11-27 01:57:54,411 | INFO     | process IDs to be killed: [3789183] (in reverse order)
[2025-11-26 20:58:54] 2025-11-27 01:57:54,612 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:58:54] 2025-11-27 01:57:54,612 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:58:54] 2025-11-27 01:57:54,628 | INFO     | did not find any defunct processes belonging to 3789183
[2025-11-26 20:58:54] 2025-11-27 01:57:54,642 | INFO     | did not find any defunct processes belonging to 3789183
[2025-11-26 20:58:54] 2025-11-27 01:57:54,651 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:58:54] 2025-11-27 01:57:54,651 | INFO     | ready for new job
[2025-11-26 20:58:54] 2025-11-27 01:57:54,651 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:58:54] 2025-11-27 01:57:54,677 | INFO     | ***************************************
[2025-11-26 20:58:54] 2025-11-27 01:57:54,678 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:58:54] 2025-11-27 01:57:54,678 | INFO     | ***************************************
[2025-11-26 20:58:54] 2025-11-27 01:57:54,678 | INFO     | 
[2025-11-26 20:58:54] 2025-11-27 01:57:54,723 | INFO     | architecture information:
[2025-11-26 20:58:54] 2025-11-27 01:57:54,727 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:58:54] 2025-11-27 01:57:54,747 | INFO     | cat /etc/os-release:
[2025-11-26 20:58:54] NAME="CentOS Linux"
[2025-11-26 20:58:54] VERSION="7 (Core)"
[2025-11-26 20:58:54] ID="centos"
[2025-11-26 20:58:54] ID_LIKE="rhel fedora"
[2025-11-26 20:58:54] VERSION_ID="7"
[2025-11-26 20:58:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:58:54] ANSI_COLOR="0;31"
[2025-11-26 20:58:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:58:54] HOME_URL="https://www.centos.org/"
[2025-11-26 20:58:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:58:54] 
[2025-11-26 20:58:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:58:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:58:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:58:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:58:54] 
[2025-11-26 20:58:54] 2025-11-27 01:57:54,747 | INFO     | ***************************************
[2025-11-26 20:58:54] 2025-11-27 01:57:55,253 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 20:58:54] 2025-11-27 01:57:55,326 | INFO     | sufficient remaining disk space (118917955584 B)
[2025-11-26 20:58:54] 2025-11-27 01:57:55,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:58:54] 2025-11-27 01:57:55,326 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:58:54] 2025-11-27 01:57:55,326 | INFO     | update_server=False
[2025-11-26 20:58:54] 2025-11-27 01:57:55,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:58:54] 2025-11-27 01:57:55,334 | INFO     | all payload control threads have been joined
[2025-11-26 20:58:54] 2025-11-27 01:57:55,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:58:54] 2025-11-27 01:57:55,489 | INFO     | aborting loop
[2025-11-26 20:58:54] 2025-11-27 01:57:55,645 | INFO     | all data control threads have been joined
[2025-11-26 20:58:54] 2025-11-27 01:57:56,333 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,340 | INFO     | [payload] control thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,373 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,495 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,545 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,563 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:58:54] 2025-11-27 01:57:56,597 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,653 | INFO     | [data] control thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,707 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:56,998 | INFO     | all job control threads have been joined
[2025-11-26 20:58:54] 2025-11-27 01:57:57,354 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:57,359 | INFO     | [job] validate thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:57,396 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:57,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:58:54] 2025-11-27 01:57:57,632 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:58,016 | INFO     | [job] control thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:58,291 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:58:54] 2025-11-27 01:57:58,410 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:57:58,579 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:58:02,300 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:58:54] 2025-11-27 01:58:25,025 | INFO     | PID=3756029 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:58:54] 2025-11-27 01:58:25,025 | INFO     | .. there are 27 such processes running
[2025-11-26 20:58:54] 2025-11-27 01:58:25,026 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:58:54] 2025-11-27 01:58:25,026 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:58:54] 2025-11-27 01:58:25,026 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:58:54] 2025-11-27 01:58:45,839 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:58:54] 2025-11-27 01:58:47,469 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140077858846528)>', '<ExcThread(monitor, started 140077506213632)>']
[2025-11-26 20:58:54] 2025-11-27 01:58:48,185 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:58:54] 2025-11-27 01:58:48,185 | INFO     | [monitor] control thread has ended
[2025-11-26 20:58:54] 2025-11-27 01:58:52,494 | INFO     | all workflow threads have been joined
[2025-11-26 20:58:54] 2025-11-27 01:58:52,494 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:58:54] 2025-11-27 01:58:52,494 | INFO     | traces error code: 0
[2025-11-26 20:58:54] 2025-11-27 01:58:52,495 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:58:54] 2025-11-27 01:58:53,396 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:58:54] 2025-11-27 01:58:53,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:58:54] 2025-11-27 01:58:53,449 [wrapper] pilotpid: 3756029
[2025-11-26 20:58:54] 2025-11-27 01:58:53,491 [wrapper] Pilot exit status: 0
[2025-11-26 20:58:54] 2025-11-27 01:58:53,572 [wrapper] pandaids: 6895382880 6895382880
[2025-11-26 20:58:54] 2025-11-27 01:58:53,758 [wrapper] cleanup supervisor_pilot  420755 3756032
[2025-11-26 20:58:54] 2025-11-27 01:58:53,784 [wrapper] Test setup, not cleaning
[2025-11-26 20:58:54] 2025-11-27 01:58:53,787 [wrapper] apfmon messages muted
[2025-11-26 20:58:54] 2025-11-27 01:58:53,789 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:58:54] 2025-11-27 01:58:53,792 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:58:54]  *** Error codes and diagnostics ***
[2025-11-26 20:58:54]     "exeErrorCode": 0,
[2025-11-26 20:58:54]     "exeErrorDiag": "",
[2025-11-26 20:58:54]     "pilotErrorCode": 0,
[2025-11-26 20:58:54]     "pilotErrorDiag": "",
[2025-11-26 20:58:54]  *** Listing of results directory ***
[2025-11-26 20:58:54] total 1718508
[2025-11-26 20:58:54] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 22:19 pilot3.tar.gz
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 22:39 queuedata.json
[2025-11-26 20:58:54] -rwx------. 1 boincer umatlas     36292 Nov 23 22:40 runpilot2-wrapper.sh
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:58:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-26 20:58:54] -rw-r--r--. 3 boincer umatlas 408497188 Nov 25 00:00 EVNT.47483658._001000.pool.root.1
[2025-11-26 20:58:54] -rw-r--r--. 3 boincer umatlas 408497188 Nov 25 00:00 ATLAS.root_0
[2025-11-26 20:58:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 20:58:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-26 20:58:54] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:00 input.tar.gz
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 19:28 pandaJob.out
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas        57 Nov 25 19:28 setup.sh.local
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas    991877 Nov 25 19:28 agis_schedconf.cvmfs.json
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas       534 Nov 26 20:13 boinc_task_state.xml
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas 911022209 Nov 26 20:56 HITS.47556137._009867.pool.root.1
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas      1064 Nov 26 20:57 memory_monitor_summary.json
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:57 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas   2799440 Nov 26 20:57 log.47556137._009867.job.log.tgz.1
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas      8618 Nov 26 20:57 heartbeat.json
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 20:58 init_data.xml
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas        96 Nov 26 20:58 pilot_heartbeat.json
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:58 boinc_mmap_file
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:58 wrapper_checkpoint.txt
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas      4825 Nov 26 20:58 pilotlog.txt
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas  11103305 Nov 26 20:58 log.47556137._009867.job.log.1
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas       353 Nov 26 20:58 output.list
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:58 runtime_log
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas  13926400 Nov 26 20:58 result.tar.gz
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas      9425 Nov 26 20:58 runtime_log.err
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas       789 Nov 26 20:58 6qSLDmKcch8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmROLKDmdVGs4m.diag
[2025-11-26 20:58:54] -rw-r--r--. 1 boincer umatlas     24185 Nov 26 20:58 stderr.txt
[2025-11-26 20:58:54] HITS file was successfully produced:
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas 911022209 Nov 26 20:56 shared/HITS.pool.root.1
[2025-11-26 20:58:54]  *** Contents of shared directory: ***
[2025-11-26 20:58:54] total 1302800
[2025-11-26 20:58:54] -rw-r--r--. 3 boincer umatlas 408497188 Nov 25 00:00 ATLAS.root_0
[2025-11-26 20:58:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 20:58:54] -rw-r--r--. 2 boincer umatlas    590104 Nov 25 00:00 input.tar.gz
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas 911022209 Nov 26 20:56 HITS.pool.root.1
[2025-11-26 20:58:54] -rw-------. 1 boincer umatlas  13926400 Nov 26 20:58 result.tar.gz
20:58:55 (3739499): run_atlas exited; CPU time 206795.141610
20:58:55 (3739499): called boinc_finish(0)

</stderr_txt>
]]>

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