Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:12:42 (2197927): wrapper (7.7.26015): starting
23:12:42 (2197927): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:12:42] Arguments: --nthreads 8
[2025-11-24 23:12:42] Threads: 8
[2025-11-24 23:12:42] Checking for CVMFS
[2025-11-24 23:12:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:12:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:12:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:12:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:12:43] 2.13.2.0 5195 34629 160636 153269 1 320 36818096 40960000 20738 16776704 0 66213539 99.770 35354532 37712 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:12:43] CVMFS is ok
[2025-11-24 23:12:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:12:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:12:43] Further information can be found at the LHC@home message board.
[2025-11-24 23:12:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:12:43] Checking for apptainer binary...
[2025-11-24 23:12:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:12:43] Running /usr/bin/apptainer --version
[2025-11-24 23:12:43] apptainer version 1.4.4-1.el9
[2025-11-24 23:12:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:12:43] c-212-19.aglt2.org
[2025-11-24 23:12:43] apptainer works
[2025-11-24 23:12:44] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:12:44] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:12:44] Starting ATLAS job with PandaID=6895365848
[2025-11-24 23:12:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:31:10]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:31:10] 2025-11-25 23:30:03,831 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 18:31:10] 2025-11-25 23:30:03,838 | INFO     | log transfer has been attempted: DONE
[2025-11-25 18:31:10] 2025-11-25 23:30:03,838 | INFO     | job 6895365848 has finished - writing final server update
[2025-11-25 18:31:10] 2025-11-25 23:30:03,838 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 18:31:10] 2025-11-25 23:30:03,881 | INFO     | executing command: lscpu
[2025-11-25 18:31:10] 2025-11-25 23:30:03,958 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 18:31:10] 2025-11-25 23:30:04,327 | INFO     | time since job start (69422s) is within the limit (172800.0s)
[2025-11-25 18:31:10] 2025-11-25 23:30:04,488 | INFO     | monitor loop #4340: job 0:6895365848 is in state 'finished'
[2025-11-25 18:31:10] 2025-11-25 23:30:04,488 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:31:10] 2025-11-25 23:30:06,336 | INFO     | time since job start (69424s) is within the limit (172800.0s)
[2025-11-25 18:31:10] 2025-11-25 23:30:07,000 | INFO     | monitor loop #4341: job 0:6895365848 is in state 'finished'
[2025-11-25 18:31:10] 2025-11-25 23:30:07,000 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:31:10] 2025-11-25 23:30:07,994 | INFO     | PID=2202223 has CPU usage=14.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 18:31:10] 2025-11-25 23:30:07,995 | INFO     | .. there are 18 such processes running
[2025-11-25 18:31:10] 2025-11-25 23:30:08,913 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 18:31:10] 2025-11-25 23:30:08,995 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3095.9221249999996
[2025-11-25 18:31:10] 2025-11-25 23:30:08,996 | INFO     | time since job start (69426s) is within the limit (172800.0s)
[2025-11-25 18:31:10] 2025-11-25 23:30:09,078 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895365848/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 18:31:10] 2025-11-25 23:30:09,079 | INFO     | extracted standard info from prmon json
[2025-11-25 18:31:10] 2025-11-25 23:30:09,079 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:31:10] 2025-11-25 23:30:09,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:31:10] 2025-11-25 23:30:09,199 | INFO     | fitting pss+swap vs Time
[2025-11-25 18:31:10] 2025-11-25 23:30:09,200 | INFO     | sum of square deviations: 456945718183.6976
[2025-11-25 18:31:10] 2025-11-25 23:30:09,352 | INFO     | sum of deviations: 22222438536338.207
[2025-11-25 18:31:10] 2025-11-25 23:30:09,352 | INFO     | mean x: 1764078702.8664324
[2025-11-25 18:31:10] 2025-11-25 23:30:09,352 | INFO     | mean y: 4362382.666080844
[2025-11-25 18:31:10] 2025-11-25 23:30:09,354 | INFO     | intersect: -85787295111.21771
[2025-11-25 18:31:10] 2025-11-25 23:30:09,355 | INFO     | chi2: 42.17747549789494
[2025-11-25 18:31:10] 2025-11-25 23:30:09,356 | INFO     | sum of square deviations: 450949394518.0744
[2025-11-25 18:31:10] 2025-11-25 23:30:09,467 | INFO     | sum of deviations: 22854509349017.906
[2025-11-25 18:31:10] 2025-11-25 23:30:09,470 | INFO     | mean x: 1764078550.3768756
[2025-11-25 18:31:10] 2025-11-25 23:30:09,470 | INFO     | mean y: 4378454.698146514
[2025-11-25 18:31:10] 2025-11-25 23:30:09,470 | INFO     | intersect: -89400663911.70049
[2025-11-25 18:31:10] 2025-11-25 23:30:09,471 | INFO     | chi2: 36.996035155648194
[2025-11-25 18:31:10] 2025-11-25 23:30:09,471 | INFO     | current chi2=36.996035155648194 (change=12.28485176289261 %)
[2025-11-25 18:31:10] 2025-11-25 23:30:09,471 | INFO     | right removable region: 1132
[2025-11-25 18:31:10] 2025-11-25 23:30:09,472 | INFO     | sum of square deviations: 450947751788.0742
[2025-11-25 18:31:10] 2025-11-25 23:30:09,494 | INFO     | sum of deviations: 21546463456426.387
[2025-11-25 18:31:10] 2025-11-25 23:30:09,494 | INFO     | mean x: 1764078855.3768756
[2025-11-25 18:31:10] 2025-11-25 23:30:09,494 | INFO     | mean y: 4379568.336275375
[2025-11-25 18:31:10] 2025-11-25 23:30:09,495 | INFO     | intersect: -84284011804.98456
[2025-11-25 18:31:10] 2025-11-25 23:30:09,495 | INFO     | chi2: 39.08343724547303
[2025-11-25 18:31:10] 2025-11-25 23:30:09,496 | INFO     | current chi2=39.08343724547303 (change=7.335759705619016 %)
[2025-11-25 18:31:10] 2025-11-25 23:30:09,496 | INFO     | left removable region: 10
[2025-11-25 18:31:10] 2025-11-25 23:30:09,496 | INFO     | sum of square deviations: 437939505972.4166
[2025-11-25 18:31:10] 2025-11-25 23:30:09,519 | INFO     | sum of deviations: 21844397704177.453
[2025-11-25 18:31:10] 2025-11-25 23:30:09,519 | INFO     | mean x: 1764078824.8983958
[2025-11-25 18:31:10] 2025-11-25 23:30:09,519 | INFO     | mean y: 4410764.793226382
[2025-11-25 18:31:10] 2025-11-25 23:30:09,519 | INFO     | intersect: -87987740907.00798
[2025-11-25 18:31:10] 2025-11-25 23:30:09,520 | INFO     | chi2: 32.23657728706909
[2025-11-25 18:31:10] 2025-11-25 23:30:09,520 | INFO     | current memory leak: 49.88 B/s (using 1122 data points, chi2=32.24)
[2025-11-25 18:31:10] 2025-11-25 23:30:09,521 | INFO     | could have reported an average CPU frequency of 3106 MHz (42 samples)
[2025-11-25 18:31:10] 2025-11-25 23:30:09,522 | INFO     | ..............................
[2025-11-25 18:31:10] 2025-11-25 23:30:09,522 | INFO     | . Timing measurements:
[2025-11-25 18:31:10] 2025-11-25 23:30:09,522 | INFO     | . get job = 0 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,522 | INFO     | . initial setup = 3 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,523 | INFO     | . payload setup = 10 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,523 | INFO     | . stage-in = 0 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,523 | INFO     | . payload execution = 69376 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,523 | INFO     | . stage-out = 4 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,523 | INFO     | . log creation = 1 s
[2025-11-25 18:31:10] 2025-11-25 23:30:09,523 | INFO     | ..............................
[2025-11-25 18:31:10] 2025-11-25 23:30:09,522 | INFO     | monitor loop #4342: job 0:6895365848 is in state 'finished'
[2025-11-25 18:31:10] 2025-11-25 23:30:09,551 | WARNING  | exception caught: deque index out of range
[2025-11-25 18:31:10] 2025-11-25 23:30:10,052 | INFO     | 
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | job summary report
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | --------------------------------------------------
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | PanDA job id: 6895365848
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | task id: 47556149
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | errors: (none)
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | pilot state: finished 
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | transexitcode: 0
[2025-11-25 18:31:10] 2025-11-25 23:30:10,065 | INFO     | exeerrorcode: 0
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | exeerrordiag: 
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | exitcode: 0
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | exitmsg: OK
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | cpuconsumptiontime: 212206 s
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | nevents: 1000
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | neventsw: 0
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | pid: 2216526
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | pgrp: 2216526
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | corecount: 8
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | event service: False
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | sizes: {0: 2284309, 9: 2284571, 11: 2284599, 69391: 2341772, 69392: 2341771, 69396: 2350826, 69399: 2351010, 69408: 2351256}
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | --------------------------------------------------
[2025-11-25 18:31:10] 2025-11-25 23:30:10,066 | INFO     | 
[2025-11-25 18:31:10] 2025-11-25 23:30:10,067 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 18:31:10] 2025-11-25 23:30:10,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,127 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:31:10] 2025-11-25 23:30:10,128 | INFO     | job 6895365848 has completed (purged errors)
[2025-11-25 18:31:10] 2025-11-25 23:30:10,129 | INFO     | overall cleanup function is called
[2025-11-25 18:31:10] 2025-11-25 23:30:11,206 | INFO     | --- collectZombieJob: --- 10, [2216526]
[2025-11-25 18:31:10] 2025-11-25 23:30:11,206 | INFO     | zombie collector waiting for pid 2216526
[2025-11-25 18:31:10] 2025-11-25 23:30:11,206 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:31:10] 2025-11-25 23:30:11,206 | INFO     | collected zombie processes
[2025-11-25 18:31:10] 2025-11-25 23:30:11,206 | INFO     | will attempt to kill all subprocesses of pid=2216526
[2025-11-25 18:31:10] 2025-11-25 23:30:12,370 | INFO     | process IDs to be killed: [2216526] (in reverse order)
[2025-11-25 18:31:10] 2025-11-25 23:30:12,525 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:31:10] 2025-11-25 23:30:12,525 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:31:10] 2025-11-25 23:30:12,597 | INFO     | did not find any defunct processes belonging to 2216526
[2025-11-25 18:31:10] 2025-11-25 23:30:12,613 | INFO     | did not find any defunct processes belonging to 2216526
[2025-11-25 18:31:10] 2025-11-25 23:30:12,615 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:31:10] 2025-11-25 23:30:12,615 | INFO     | ready for new job
[2025-11-25 18:31:10] 2025-11-25 23:30:12,615 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:31:10] 2025-11-25 23:30:12,620 | INFO     | ***************************************
[2025-11-25 18:31:10] 2025-11-25 23:30:12,620 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:31:10] 2025-11-25 23:30:12,620 | INFO     | ***************************************
[2025-11-25 18:31:10] 2025-11-25 23:30:12,620 | INFO     | 
[2025-11-25 18:31:10] 2025-11-25 23:30:12,625 | INFO     | architecture information:
[2025-11-25 18:31:10] 2025-11-25 23:30:12,626 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:31:10] 2025-11-25 23:30:12,645 | INFO     | cat /etc/os-release:
[2025-11-25 18:31:10] NAME="CentOS Linux"
[2025-11-25 18:31:10] VERSION="7 (Core)"
[2025-11-25 18:31:10] ID="centos"
[2025-11-25 18:31:10] ID_LIKE="rhel fedora"
[2025-11-25 18:31:10] VERSION_ID="7"
[2025-11-25 18:31:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:31:10] ANSI_COLOR="0;31"
[2025-11-25 18:31:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:31:10] HOME_URL="https://www.centos.org/"
[2025-11-25 18:31:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:31:10] 
[2025-11-25 18:31:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:31:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:31:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:31:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:31:10] 
[2025-11-25 18:31:10] 2025-11-25 23:30:12,645 | INFO     | ***************************************
[2025-11-25 18:31:10] 2025-11-25 23:30:13,149 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 18:31:10] 2025-11-25 23:30:13,193 | INFO     | sufficient remaining disk space (121704022016 B)
[2025-11-25 18:31:10] 2025-11-25 23:30:13,194 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:31:10] 2025-11-25 23:30:13,194 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:31:10] 2025-11-25 23:30:13,194 | INFO     | update_server=False
[2025-11-25 18:31:10] 2025-11-25 23:30:13,194 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:31:10] 2025-11-25 23:30:13,194 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:31:10] 2025-11-25 23:30:13,194 | INFO     | aborting loop
[2025-11-25 18:31:10] 2025-11-25 23:30:13,335 | INFO     | all job control threads have been joined
[2025-11-25 18:31:10] 2025-11-25 23:30:13,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:31:10] 2025-11-25 23:30:13,581 | INFO     | all data control threads have been joined
[2025-11-25 18:31:10] 2025-11-25 23:30:14,200 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:14,205 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:14,362 | INFO     | [job] control thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:14,587 | INFO     | [data] control thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:14,650 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:14,668 | INFO     | all payload control threads have been joined
[2025-11-25 18:31:10] 2025-11-25 23:30:14,956 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:14,978 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,066 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:31:10] 2025-11-25 23:30:15,091 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,176 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,192 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,204 | INFO     | [job] validate thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,517 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,569 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:15,678 | INFO     | [payload] control thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:16,073 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:16,120 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:31:10] 2025-11-25 23:30:20,129 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:31:10] 2025-11-25 23:30:42,719 | INFO     | PID=2202223 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 18:31:10] 2025-11-25 23:30:42,719 | INFO     | .. there are 18 such processes running
[2025-11-25 18:31:10] 2025-11-25 23:30:42,719 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:31:10] 2025-11-25 23:30:42,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:31:10] 2025-11-25 23:30:42,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:31:10] 2025-11-25 23:31:04,747 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:31:10] 2025-11-25 23:31:05,175 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918869403456)>', '<ExcThread(monitor, started 139918516922112)>']
[2025-11-25 18:31:10] 2025-11-25 23:31:05,870 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:31:10] 2025-11-25 23:31:05,872 | INFO     | [monitor] control thread has ended
[2025-11-25 18:31:10] 2025-11-25 23:31:10,224 | INFO     | all workflow threads have been joined
[2025-11-25 18:31:10] 2025-11-25 23:31:10,224 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:31:10] 2025-11-25 23:31:10,242 | INFO     | traces error code: 0
[2025-11-25 18:31:10] 2025-11-25 23:31:10,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:31:10] 2025-11-25 23:31:10,520 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:31:10] 2025-11-25 23:31:10,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:31:10] 2025-11-25 23:31:10,531 [wrapper] pilotpid: 2202223
[2025-11-25 18:31:10] 2025-11-25 23:31:10,537 [wrapper] Pilot exit status: 0
[2025-11-25 18:31:10] 2025-11-25 23:31:10,561 [wrapper] pandaids: 6895365848
[2025-11-25 18:31:10] 2025-11-25 23:31:10,664 [wrapper] cleanup supervisor_pilot  942389 2202224
[2025-11-25 18:31:10] 2025-11-25 23:31:10,667 [wrapper] Test setup, not cleaning
[2025-11-25 18:31:10] 2025-11-25 23:31:10,672 [wrapper] apfmon messages muted
[2025-11-25 18:31:10] 2025-11-25 23:31:10,676 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:31:10] 2025-11-25 23:31:10,682 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:31:10]  *** Error codes and diagnostics ***
[2025-11-25 18:31:10]     "exeErrorCode": 0,
[2025-11-25 18:31:10]     "exeErrorDiag": "",
[2025-11-25 18:31:10]     "pilotErrorCode": 0,
[2025-11-25 18:31:10]     "pilotErrorDiag": "",
[2025-11-25 18:31:10]  *** Listing of results directory ***
[2025-11-25 18:31:10] total 1320612
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 12:39 pilot3.tar.gz
[2025-11-25 18:31:10] -rwx------. 1 boincer umatlas     36292 Nov 23 13:02 runpilot2-wrapper.sh
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 13:02 queuedata.json
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:31:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:12 run_atlas
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:12 job.xml
[2025-11-25 18:31:10] -rw-r--r--. 2 boincer umatlas 410336707 Nov 24 23:12 EVNT.47483658._001181.pool.root.1
[2025-11-25 18:31:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:12 start_atlas.sh
[2025-11-25 18:31:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:12 shared
[2025-11-25 18:31:10] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 23:12 input.tar.gz
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:12 boinc_lockfile
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas      2785 Nov 24 23:12 pandaJob.out
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas        57 Nov 24 23:12 setup.sh.local
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas    991801 Nov 24 23:12 agis_schedconf.cvmfs.json
[2025-11-25 18:31:10] drwx------. 5 boincer umatlas      4096 Nov 24 23:13 pilot3
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas       533 Nov 25 18:06 boinc_task_state.xml
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas      6949 Nov 25 18:27 init_data.xml
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas 915623305 Nov 25 18:29 HITS.47556149._001680.pool.root.1
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas      1076 Nov 25 18:29 memory_monitor_summary.json
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas   1516240 Nov 25 18:29 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas   2271664 Nov 25 18:29 log.47556149._001680.job.log.tgz.1
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas        95 Nov 25 18:30 pilot_heartbeat.json
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas      8643 Nov 25 18:30 heartbeat.json
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas        29 Nov 25 18:31 wrapper_checkpoint.txt
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas      4825 Nov 25 18:31 pilotlog.txt
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 18:31 boinc_mmap_file
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas   8939385 Nov 25 18:31 log.47556149._001680.job.log.1
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas       353 Nov 25 18:31 output.list
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas       620 Nov 25 18:31 runtime_log
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas  11233280 Nov 25 18:31 result.tar.gz
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 18:31 runtime_log.err
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas       666 Nov 25 18:31 DJFNDmdaTh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlfIKDmd5WFUn.diag
[2025-11-25 18:31:10] -rw-r--r--. 1 boincer umatlas     21822 Nov 25 18:31 stderr.txt
[2025-11-25 18:31:10] HITS file was successfully produced:
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas 915623305 Nov 25 18:29 shared/HITS.pool.root.1
[2025-11-25 18:31:10]  *** Contents of shared directory: ***
[2025-11-25 18:31:10] total 1306460
[2025-11-25 18:31:10] -rw-r--r--. 2 boincer umatlas 410336707 Nov 24 23:12 ATLAS.root_0
[2025-11-25 18:31:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:12 start_atlas.sh
[2025-11-25 18:31:10] -rw-r--r--. 2 boincer umatlas    590100 Nov 24 23:12 input.tar.gz
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas 915623305 Nov 25 18:29 HITS.pool.root.1
[2025-11-25 18:31:10] -rw-------. 1 boincer umatlas  11233280 Nov 25 18:31 result.tar.gz
18:31:12 (2197927): run_atlas exited; CPU time 213162.366674
18:31:12 (2197927): called boinc_finish(0)

</stderr_txt>
]]>

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