Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:58:03 (1093626): wrapper (7.7.26015): starting
21:58:03 (1093626): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:58:03] Arguments: --nthreads 8
[2025-11-24 21:58:03] Threads: 8
[2025-11-24 21:58:03] Checking for CVMFS
[2025-11-24 21:58:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:58:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:58:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:58:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:58:03] 2.13.3.0 11285 27994 243728 153266 1 654 22872186 32935936 46647 16776704 0 195540125 99.602 205214978 38175 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 21:58:03] CVMFS is ok
[2025-11-24 21:58:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:58:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 21:58:03] Further information can be found at the LHC@home message board.
[2025-11-24 21:58:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:58:03] Checking for apptainer binary...
[2025-11-24 21:58:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:58:03] Running /usr/bin/apptainer --version
[2025-11-24 21:58:03] apptainer version 1.4.4-1.el9
[2025-11-24 21:58:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:58:03] c7-3-29.aglt2.org
[2025-11-24 21:58:03] apptainer works
[2025-11-24 21:58:03] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:58:03] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:58:03] Starting ATLAS job with PandaID=6895365672
[2025-11-24 21:58:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:01:46]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:01:46] 2025-11-25 15:00:46,145 | INFO     | log transfer has been attempted: DONE
[2025-11-25 10:01:46] 2025-11-25 15:00:46,145 | INFO     | job 6895365672 has finished - writing final server update
[2025-11-25 10:01:46] 2025-11-25 15:00:46,145 | INFO     | total number of processed events: 1000 (read)
[2025-11-25 10:01:46] 2025-11-25 15:00:46,145 | INFO     | executing command: lscpu
[2025-11-25 10:01:46] 2025-11-25 15:00:46,208 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 10:01:46] 2025-11-25 15:00:46,605 | INFO     | time since job start (43342s) is within the limit (172800.0s)
[2025-11-25 10:01:46] 2025-11-25 15:00:47,765 | INFO     | monitor loop #2744: job 0:6895365672 is in state 'finished'
[2025-11-25 10:01:46] 2025-11-25 15:00:47,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:01:46] 2025-11-25 15:00:48,527 | INFO     | PID=1103960 has CPU usage=24.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-25 10:01:46] 2025-11-25 15:00:48,527 | INFO     | .. there are 75 such processes running
[2025-11-25 10:01:46] 2025-11-25 15:00:49,531 | INFO     | time since job start (43345s) is within the limit (172800.0s)
[2025-11-25 10:01:46] 2025-11-25 15:00:50,272 | INFO     | monitor loop #2745: job 0:6895365672 is in state 'finished'
[2025-11-25 10:01:46] 2025-11-25 15:00:50,272 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:01:46] 2025-11-25 15:00:51,537 | INFO     | time since job start (43347s) is within the limit (172800.0s)
[2025-11-25 10:01:46] 2025-11-25 15:00:52,777 | INFO     | monitor loop #2746: job 0:6895365672 is in state 'finished'
[2025-11-25 10:01:46] 2025-11-25 15:00:52,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,334 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 10:01:46] 2025-11-25 15:00:53,339 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3212.5566458333337
[2025-11-25 10:01:46] 2025-11-25 15:00:53,353 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895365672/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,353 | INFO     | extracted standard info from prmon json
[2025-11-25 10:01:46] 2025-11-25 15:00:53,353 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:01:46] 2025-11-25 15:00:53,353 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:01:46] 2025-11-25 15:00:53,362 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:01:46] 2025-11-25 15:00:53,363 | INFO     | sum of square deviations: 110981614285.71928
[2025-11-25 10:01:46] 2025-11-25 15:00:53,377 | INFO     | sum of deviations: 3515782166787.5103
[2025-11-25 10:01:46] 2025-11-25 15:00:53,378 | INFO     | mean x: 1764061168.7647886
[2025-11-25 10:01:46] 2025-11-25 15:00:53,378 | INFO     | mean y: 5821177.3802816905
[2025-11-25 10:01:46] 2025-11-25 15:00:53,378 | INFO     | intersect: -55877802774.04781
[2025-11-25 10:01:46] 2025-11-25 15:00:53,379 | INFO     | chi2: 25.924335434153164
[2025-11-25 10:01:46] 2025-11-25 15:00:53,379 | INFO     | sum of square deviations: 108653451227.8666
[2025-11-25 10:01:46] 2025-11-25 15:00:53,390 | INFO     | sum of deviations: 4017092762500.068
[2025-11-25 10:01:46] 2025-11-25 15:00:53,390 | INFO     | mean x: 1764061016.2666667
[2025-11-25 10:01:46] 2025-11-25 15:00:53,390 | INFO     | mean y: 5854000.866666666
[2025-11-25 10:01:46] 2025-11-25 15:00:53,390 | INFO     | intersect: -65214317663.92327
[2025-11-25 10:01:46] 2025-11-25 15:00:53,391 | INFO     | chi2: 22.698458045700924
[2025-11-25 10:01:46] 2025-11-25 15:00:53,391 | INFO     | current chi2=22.698458045700924 (change=12.443433300906968 %)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,391 | INFO     | right removable region: 704
[2025-11-25 10:01:46] 2025-11-25 15:00:53,392 | INFO     | sum of square deviations: 108653336547.86662
[2025-11-25 10:01:46] 2025-11-25 15:00:53,402 | INFO     | sum of deviations: 2995784938258.0024
[2025-11-25 10:01:46] 2025-11-25 15:00:53,403 | INFO     | mean x: 1764061321.2666667
[2025-11-25 10:01:46] 2025-11-25 15:00:53,403 | INFO     | mean y: 5855215.70212766
[2025-11-25 10:01:46] 2025-11-25 15:00:53,403 | INFO     | intersect: -48632764676.89569
[2025-11-25 10:01:46] 2025-11-25 15:00:53,407 | INFO     | chi2: 22.017725907003157
[2025-11-25 10:01:46] 2025-11-25 15:00:53,408 | INFO     | current chi2=22.017725907003157 (change=15.069275496271246 %)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,408 | INFO     | left removable region: 10
[2025-11-25 10:01:46] 2025-11-25 15:00:53,408 | INFO     | sum of square deviations: 103646361112.57213
[2025-11-25 10:01:46] 2025-11-25 15:00:53,419 | INFO     | sum of deviations: 3189332630119.8096
[2025-11-25 10:01:46] 2025-11-25 15:00:53,419 | INFO     | mean x: 1764061290.7708933
[2025-11-25 10:01:46] 2025-11-25 15:00:53,419 | INFO     | mean y: 5918182.030259366
[2025-11-25 10:01:46] 2025-11-25 15:00:53,419 | INFO     | intersect: -54276530094.91589
[2025-11-25 10:01:46] 2025-11-25 15:00:53,420 | INFO     | chi2: 16.61781067850562
[2025-11-25 10:01:46] 2025-11-25 15:00:53,420 | INFO     | current memory leak: 30.77 B/s (using 694 data points, chi2=16.62)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | could have reported an average CPU frequency of 3218 MHz (27 samples)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | ..............................
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . Timing measurements:
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . get job = 0 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . initial setup = 2 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . payload setup = 10 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . stage-in = 0 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . payload execution = 43300 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . stage-out = 3 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | . log creation = 0 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,421 | INFO     | ..............................
[2025-11-25 10:01:46] 2025-11-25 15:00:53,544 | INFO     | time since job start (43349s) is within the limit (172800.0s)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,891 | INFO     | 
[2025-11-25 10:01:46] 2025-11-25 15:00:53,891 | INFO     | job summary report
[2025-11-25 10:01:46] 2025-11-25 15:00:53,891 | INFO     | --------------------------------------------------
[2025-11-25 10:01:46] 2025-11-25 15:00:53,891 | INFO     | PanDA job id: 6895365672
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | task id: 47556137
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | errors: (none)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | pilot state: finished 
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | transexitcode: 0
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | exeerrorcode: 0
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | exeerrordiag: 
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | exitcode: 0
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | exitmsg: OK
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | cpuconsumptiontime: 190238 s
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | nevents: 1000
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | neventsw: 0
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | pid: 1110824
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | pgrp: 1110824
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | corecount: 8
[2025-11-25 10:01:46] 2025-11-25 15:00:53,892 | INFO     | event service: False
[2025-11-25 10:01:46] 2025-11-25 15:00:53,893 | INFO     | sizes: {0: 2284253, 10: 2284515, 11: 2284543, 43314: 2330575, 43318: 2339574, 43321: 2339630, 43329: 2340004}
[2025-11-25 10:01:46] 2025-11-25 15:00:53,893 | INFO     | --------------------------------------------------
[2025-11-25 10:01:46] 2025-11-25 15:00:53,893 | INFO     | 
[2025-11-25 10:01:46] 2025-11-25 15:00:53,893 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 10:01:46] 2025-11-25 15:00:53,915 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,915 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,915 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,915 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,915 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,917 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:01:46] 2025-11-25 15:00:53,918 | INFO     | job 6895365672 has completed (purged errors)
[2025-11-25 10:01:46] 2025-11-25 15:00:53,918 | INFO     | overall cleanup function is called
[2025-11-25 10:01:46] 2025-11-25 15:00:54,938 | INFO     | --- collectZombieJob: --- 10, [1110824]
[2025-11-25 10:01:46] 2025-11-25 15:00:54,939 | INFO     | zombie collector waiting for pid 1110824
[2025-11-25 10:01:46] 2025-11-25 15:00:54,939 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:01:46] 2025-11-25 15:00:54,939 | INFO     | collected zombie processes
[2025-11-25 10:01:46] 2025-11-25 15:00:54,939 | INFO     | will attempt to kill all subprocesses of pid=1110824
[2025-11-25 10:01:46] 2025-11-25 15:00:55,647 | INFO     | process IDs to be killed: [1110824] (in reverse order)
[2025-11-25 10:01:46] 2025-11-25 15:00:55,868 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:01:46] 2025-11-25 15:00:55,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:01:46] 2025-11-25 15:00:55,900 | INFO     | did not find any defunct processes belonging to 1110824
[2025-11-25 10:01:46] 2025-11-25 15:00:55,936 | INFO     | did not find any defunct processes belonging to 1110824
[2025-11-25 10:01:46] 2025-11-25 15:00:55,937 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:01:46] 2025-11-25 15:00:55,937 | INFO     | ready for new job
[2025-11-25 10:01:46] 2025-11-25 15:00:55,937 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:01:46] 2025-11-25 15:00:55,940 | INFO     | ***************************************
[2025-11-25 10:01:46] 2025-11-25 15:00:55,940 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:01:46] 2025-11-25 15:00:55,940 | INFO     | ***************************************
[2025-11-25 10:01:46] 2025-11-25 15:00:55,940 | INFO     | 
[2025-11-25 10:01:46] 2025-11-25 15:00:55,945 | INFO     | architecture information:
[2025-11-25 10:01:46] 2025-11-25 15:00:55,946 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:01:46] 2025-11-25 15:00:55,970 | INFO     | cat /etc/os-release:
[2025-11-25 10:01:46] NAME="CentOS Linux"
[2025-11-25 10:01:46] VERSION="7 (Core)"
[2025-11-25 10:01:46] ID="centos"
[2025-11-25 10:01:46] ID_LIKE="rhel fedora"
[2025-11-25 10:01:46] VERSION_ID="7"
[2025-11-25 10:01:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:01:46] ANSI_COLOR="0;31"
[2025-11-25 10:01:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:01:46] HOME_URL="https://www.centos.org/"
[2025-11-25 10:01:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:01:46] 
[2025-11-25 10:01:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:01:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:01:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:01:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:01:46] 
[2025-11-25 10:01:46] 2025-11-25 15:00:55,970 | INFO     | ***************************************
[2025-11-25 10:01:46] 2025-11-25 15:00:56,473 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 10:01:46] 2025-11-25 15:00:56,505 | INFO     | sufficient remaining disk space (65156415488 B)
[2025-11-25 10:01:46] 2025-11-25 15:00:56,505 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:01:46] 2025-11-25 15:00:56,505 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:01:46] 2025-11-25 15:00:56,505 | INFO     | update_server=False
[2025-11-25 10:01:46] 2025-11-25 15:00:56,505 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:01:46] 2025-11-25 15:00:56,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:01:46] 2025-11-25 15:00:56,507 | INFO     | aborting loop
[2025-11-25 10:01:46] 2025-11-25 15:00:57,371 | INFO     | all data control threads have been joined
[2025-11-25 10:01:46] 2025-11-25 15:00:57,465 | INFO     | all payload control threads have been joined
[2025-11-25 10:01:46] 2025-11-25 15:00:57,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:01:46] 2025-11-25 15:00:57,510 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:57,511 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:57,565 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:57,573 | INFO     | all job control threads have been joined
[2025-11-25 10:01:46] 2025-11-25 15:00:57,707 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:57,810 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,073 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,213 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,378 | INFO     | [data] control thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,412 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,472 | INFO     | [payload] control thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,491 | INFO     | [job] validate thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,514 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:01:46] 2025-11-25 15:00:58,579 | INFO     | [job] control thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:58,882 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:59,501 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:59,520 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:00:59,716 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:01:46] 2025-11-25 15:01:03,723 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:01:46] 2025-11-25 15:01:27,481 | INFO     | PID=1103960 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 10:01:46] 2025-11-25 15:01:27,485 | INFO     | .. there are 75 such processes running
[2025-11-25 10:01:46] 2025-11-25 15:01:27,485 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:01:46] 2025-11-25 15:01:27,485 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:01:46] 2025-11-25 15:01:27,485 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:01:46] 2025-11-25 15:01:39,163 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:01:46] 2025-11-25 15:01:40,420 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140337457731392)>', '<ExcThread(monitor, started 140336965867264)>']
[2025-11-25 10:01:46] 2025-11-25 15:01:40,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:01:46] 2025-11-25 15:01:40,590 | INFO     | [monitor] control thread has ended
[2025-11-25 10:01:46] 2025-11-25 15:01:45,446 | INFO     | all workflow threads have been joined
[2025-11-25 10:01:46] 2025-11-25 15:01:45,448 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:01:46] 2025-11-25 15:01:45,449 | INFO     | traces error code: 0
[2025-11-25 10:01:46] 2025-11-25 15:01:45,449 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:01:46] 2025-11-25 15:01:45,612 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:01:46] 2025-11-25 15:01:45,615 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:01:46] 2025-11-25 15:01:45,617 [wrapper] pilotpid: 1103960
[2025-11-25 10:01:46] 2025-11-25 15:01:45,619 [wrapper] Pilot exit status: 0
[2025-11-25 10:01:46] 2025-11-25 15:01:45,673 [wrapper] pandaids: 6895365672
[2025-11-25 10:01:46] 2025-11-25 15:01:45,943 [wrapper] cleanup supervisor_pilot 1181322 1103961
[2025-11-25 10:01:46] 2025-11-25 15:01:45,950 [wrapper] Test setup, not cleaning
[2025-11-25 10:01:46] 2025-11-25 15:01:45,956 [wrapper] apfmon messages muted
[2025-11-25 10:01:46] 2025-11-25 15:01:45,962 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:01:46] 2025-11-25 15:01:45,968 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:01:46]  *** Error codes and diagnostics ***
[2025-11-25 10:01:46]     "exeErrorCode": 0,
[2025-11-25 10:01:46]     "exeErrorDiag": "",
[2025-11-25 10:01:46]     "pilotErrorCode": 0,
[2025-11-25 10:01:46]     "pilotErrorDiag": "",
[2025-11-25 10:01:46]  *** Listing of results directory ***
[2025-11-25 10:01:46] total 1299004
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas    598293 Nov  6 03:41 pilot3.tar.gz
[2025-11-25 10:01:46] -rwx------. 1 boincer umatlas     36292 Nov 23 12:36 runpilot2-wrapper.sh
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 12:36 queuedata.json
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas       100 Nov 24 21:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:01:46] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 21:58 run_atlas
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas       105 Nov 24 21:58 job.xml
[2025-11-25 10:01:46] -rw-r--r--. 2 boincer umatlas 411180650 Nov 24 21:58 EVNT.47483658._000830.pool.root.1
[2025-11-25 10:01:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 21:58 start_atlas.sh
[2025-11-25 10:01:46] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 21:58 shared
[2025-11-25 10:01:46] -rw-r--r--. 2 boincer umatlas    611283 Nov 24 21:58 input.tar.gz
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas         0 Nov 24 21:58 boinc_lockfile
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas      2782 Nov 24 21:58 pandaJob.out
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas        57 Nov 24 21:58 setup.sh.local
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas    991801 Nov 24 21:58 agis_schedconf.cvmfs.json
[2025-11-25 10:01:46] drwx------. 7 boincer umatlas      4096 Nov 24 21:58 pilot3
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas       532 Nov 25 09:53 boinc_task_state.xml
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas      6945 Nov 25 09:55 init_data.xml
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas 899800765 Nov 25 10:00 HITS.47556137._008161.pool.root.1
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas        95 Nov 25 10:00 pilot_heartbeat.json
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas      1074 Nov 25 10:00 memory_monitor_summary.json
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas   1516240 Nov 25 10:00 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas   1945379 Nov 25 10:00 log.47556137._008161.job.log.tgz.1
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas      8636 Nov 25 10:00 heartbeat.json
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 10:01 boinc_mmap_file
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas        29 Nov 25 10:01 wrapper_checkpoint.txt
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas      4824 Nov 25 10:01 pilotlog.txt
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas   5669009 Nov 25 10:01 log.47556137._008161.job.log.1
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas       353 Nov 25 10:01 output.list
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas       620 Nov 25 10:01 runtime_log
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas   7639040 Nov 25 10:01 result.tar.gz
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 10:01 runtime_log.err
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas       665 Nov 25 10:01 c3KODmaBTh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmD4KKDmJOE3On.diag
[2025-11-25 10:01:46] -rw-r--r--. 1 boincer umatlas     21835 Nov 25 10:01 stderr.txt
[2025-11-25 10:01:46] HITS file was successfully produced:
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas 899800765 Nov 25 10:00 shared/HITS.pool.root.1
[2025-11-25 10:01:46]  *** Contents of shared directory: ***
[2025-11-25 10:01:46] total 1288340
[2025-11-25 10:01:46] -rw-r--r--. 2 boincer umatlas 411180650 Nov 24 21:58 ATLAS.root_0
[2025-11-25 10:01:46] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 21:58 start_atlas.sh
[2025-11-25 10:01:46] -rw-r--r--. 2 boincer umatlas    611283 Nov 24 21:58 input.tar.gz
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas 899800765 Nov 25 10:00 HITS.pool.root.1
[2025-11-25 10:01:46] -rw-------. 1 boincer umatlas   7639040 Nov 25 10:01 result.tar.gz
10:01:47 (1093626): run_atlas exited; CPU time 191661.092667
10:01:47 (1093626): called boinc_finish(0)

</stderr_txt>
]]>

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