Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:43 (924756): wrapper (7.7.26015): starting
00:02:43 (924756): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:02:43] Arguments: --nthreads 12
[2025-11-25 00:02:43] Threads: 12
[2025-11-25 00:02:43] Checking for CVMFS
[2025-11-25 00:02:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:02:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:02:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:44] 2.13.2.0 11666 32518 281772 153270 2 341 39999745 40960000 22895 16776704 0 54121427 99.793 26113398 35783 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:02:44] CVMFS is ok
[2025-11-25 00:02:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:44] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:44] Checking for apptainer binary...
[2025-11-25 00:02:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:44] Running /usr/bin/apptainer --version
[2025-11-25 00:02:44] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:45] c-211-33-2.aglt2.org
[2025-11-25 00:02:45] apptainer works
[2025-11-25 00:02:45] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:02:45] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:02:45] Starting ATLAS job with PandaID=6895381180
[2025-11-25 00:02:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 18:38:27]  *** The last 200 lines of the pilot log: ***
[2025-11-25 18:38:27] 2025-11-25 23:37:36,712 | INFO     | monitor loop #3852: job 0:6895381180 is in state 'finished'
[2025-11-25 18:38:27] 2025-11-25 23:37:36,712 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:38:27] 2025-11-25 23:37:37,939 | INFO     | time since job start (66808s) is within the limit (172800.0s)
[2025-11-25 18:38:27] 2025-11-25 23:37:39,250 | INFO     | monitor loop #3853: job 0:6895381180 is in state 'finished'
[2025-11-25 18:38:27] 2025-11-25 23:37:39,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:38:27] 2025-11-25 23:37:39,948 | INFO     | time since job start (66810s) is within the limit (172800.0s)
[2025-11-25 18:38:27] 2025-11-25 23:37:41,777 | INFO     | monitor loop #3854: job 0:6895381180 is in state 'finished'
[2025-11-25 18:38:27] 2025-11-25 23:37:41,777 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:38:27] 2025-11-25 23:37:42,027 | INFO     | time since job start (66813s) is within the limit (172800.0s)
[2025-11-25 18:38:27] 2025-11-25 23:37:44,045 | INFO     | time since job start (66815s) is within the limit (172800.0s)
[2025-11-25 18:38:27] 2025-11-25 23:37:44,310 | INFO     | monitor loop #3855: job 0:6895381180 is in state 'finished'
[2025-11-25 18:38:27] 2025-11-25 23:37:44,334 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:38:27] 2025-11-25 23:37:45,820 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 18:38:27] 2025-11-25 23:37:45,891 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2604.572489583333
[2025-11-25 18:38:27] 2025-11-25 23:37:45,987 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895381180/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 18:38:27] 2025-11-25 23:37:45,988 | INFO     | extracted standard info from prmon json
[2025-11-25 18:38:27] 2025-11-25 23:37:45,988 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 18:38:27] 2025-11-25 23:37:45,988 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 18:38:27] 2025-11-25 23:37:46,082 | INFO     | time since job start (66817s) is within the limit (172800.0s)
[2025-11-25 18:38:27] 2025-11-25 23:37:46,083 | INFO     | fitting pss+swap vs Time
[2025-11-25 18:38:27] 2025-11-25 23:37:46,085 | INFO     | sum of square deviations: 403752547707.4605
[2025-11-25 18:38:27] 2025-11-25 23:37:46,546 | INFO     | sum of deviations: 3741046418516.137
[2025-11-25 18:38:27] 2025-11-25 23:37:46,596 | INFO     | mean x: 1764080503.180403
[2025-11-25 18:38:27] 2025-11-25 23:37:46,597 | INFO     | mean y: 3500361.445970696
[2025-11-25 18:38:27] 2025-11-25 23:37:46,597 | INFO     | intersect: -16341924790.344957
[2025-11-25 18:38:27] 2025-11-25 23:37:46,598 | INFO     | chi2: 23.031283203599166
[2025-11-25 18:38:27] 2025-11-25 23:37:46,645 | INFO     | sum of square deviations: 398233682893.29517
[2025-11-25 18:38:27] 2025-11-25 23:37:46,919 | INFO     | monitor loop #3856: job 0:6895381180 is in state 'finished'
[2025-11-25 18:38:27] 2025-11-25 23:37:46,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 18:38:27] 2025-11-25 23:37:47,022 | INFO     | sum of deviations: 4210856723616.895
[2025-11-25 18:38:27] 2025-11-25 23:37:47,022 | INFO     | mean x: 1764080350.7111316
[2025-11-25 18:38:27] 2025-11-25 23:37:47,023 | INFO     | mean y: 3513338.802207912
[2025-11-25 18:38:27] 2025-11-25 23:37:47,023 | INFO     | intersect: -18649578865.31151
[2025-11-25 18:38:27] 2025-11-25 23:37:47,075 | INFO     | chi2: 19.357345695049045
[2025-11-25 18:38:27] 2025-11-25 23:37:47,076 | INFO     | current chi2=19.357345695049045 (change=15.95194447513886 %)
[2025-11-25 18:38:27] 2025-11-25 23:37:47,076 | INFO     | right removable region: 1086
[2025-11-25 18:38:27] 2025-11-25 23:37:47,077 | INFO     | sum of square deviations: 398229232943.2952
[2025-11-25 18:38:27] 2025-11-25 23:37:47,247 | INFO     | sum of deviations: 3199100379682.376
[2025-11-25 18:38:27] 2025-11-25 23:37:47,247 | INFO     | mean x: 1764080655.7111316
[2025-11-25 18:38:27] 2025-11-25 23:37:47,247 | INFO     | mean y: 3515325.8610855564
[2025-11-25 18:38:27] 2025-11-25 23:37:47,247 | INFO     | intersect: -14167898092.900673
[2025-11-25 18:38:27] 2025-11-25 23:37:47,249 | INFO     | chi2: 18.771404449933254
[2025-11-25 18:38:27] 2025-11-25 23:37:47,265 | INFO     | current chi2=18.771404449933254 (change=18.496054761726036 %)
[2025-11-25 18:38:27] 2025-11-25 23:37:47,265 | INFO     | left removable region: 10
[2025-11-25 18:38:27] 2025-11-25 23:37:47,267 | INFO     | sum of square deviations: 386260920934.7986
[2025-11-25 18:38:27] 2025-11-25 23:37:47,510 | INFO     | sum of deviations: 3280300596238.0537
[2025-11-25 18:38:27] 2025-11-25 23:37:47,510 | INFO     | mean x: 1764080625.2797399
[2025-11-25 18:38:27] 2025-11-25 23:37:47,510 | INFO     | mean y: 3544441.6078066914
[2025-11-25 18:38:27] 2025-11-25 23:37:47,511 | INFO     | intersect: -14977817672.148285
[2025-11-25 18:38:27] 2025-11-25 23:37:47,577 | INFO     | chi2: 11.162974666251055
[2025-11-25 18:38:27] 2025-11-25 23:37:47,578 | INFO     | current memory leak: 8.49 B/s (using 1076 data points, chi2=11.16)
[2025-11-25 18:38:27] 2025-11-25 23:37:47,579 | INFO     | could have reported an average CPU frequency of 2609 MHz (40 samples)
[2025-11-25 18:38:27] 2025-11-25 23:37:47,579 | INFO     | ..............................
[2025-11-25 18:38:27] 2025-11-25 23:37:47,579 | INFO     | . Timing measurements:
[2025-11-25 18:38:27] 2025-11-25 23:37:47,579 | INFO     | . get job = 0 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,579 | INFO     | . initial setup = 7 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,580 | INFO     | . payload setup = 50 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,580 | INFO     | . stage-in = 0 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,624 | INFO     | . payload execution = 66624 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,624 | INFO     | . stage-out = 10 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,624 | INFO     | . log creation = 3 s
[2025-11-25 18:38:27] 2025-11-25 23:37:47,624 | INFO     | ..............................
[2025-11-25 18:38:27] 2025-11-25 23:37:48,838 | INFO     | 
[2025-11-25 18:38:27] 2025-11-25 23:37:48,838 | INFO     | job summary report
[2025-11-25 18:38:27] 2025-11-25 23:37:48,838 | INFO     | --------------------------------------------------
[2025-11-25 18:38:27] 2025-11-25 23:37:48,838 | INFO     | PanDA job id: 6895381180
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | task id: 47556137
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | errors: (none)
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | pilot state: finished 
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | transexitcode: 0
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | exeerrorcode: 0
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | exeerrordiag: 
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | exitcode: 0
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | exitmsg: OK
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | cpuconsumptiontime: 281190 s
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | nevents: 1000
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | neventsw: 0
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | pid: 939011
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | pgrp: 939011
[2025-11-25 18:38:27] 2025-11-25 23:37:48,839 | INFO     | corecount: 12
[2025-11-25 18:38:27] 2025-11-25 23:37:48,840 | INFO     | event service: False
[2025-11-25 18:38:27] 2025-11-25 23:37:48,840 | INFO     | sizes: {0: 2284138, 1: 2284337, 2: 2284337, 12: 2284365, 24: 2284393, 35: 2284421, 37: 2284839, 47: 2284867, 66679: 2340004, 66690: 2349003, 66694: 2349059, 66733:
[2025-11-25 18:38:27] 2025-11-25 23:37:48,840 | INFO     | --------------------------------------------------
[2025-11-25 18:38:27] 2025-11-25 23:37:48,840 | INFO     | 
[2025-11-25 18:38:27] 2025-11-25 23:37:48,840 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 18:38:27] 2025-11-25 23:37:48,931 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | job 6895381180 has completed (purged errors)
[2025-11-25 18:38:27] 2025-11-25 23:37:48,933 | INFO     | overall cleanup function is called
[2025-11-25 18:38:27] 2025-11-25 23:37:50,065 | INFO     | --- collectZombieJob: --- 10, [939011]
[2025-11-25 18:38:27] 2025-11-25 23:37:50,065 | INFO     | zombie collector waiting for pid 939011
[2025-11-25 18:38:27] 2025-11-25 23:37:50,065 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 18:38:27] 2025-11-25 23:37:50,066 | INFO     | collected zombie processes
[2025-11-25 18:38:27] 2025-11-25 23:37:50,066 | INFO     | will attempt to kill all subprocesses of pid=939011
[2025-11-25 18:38:27] 2025-11-25 23:37:51,470 | INFO     | PID=928596 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 18:38:27] 2025-11-25 23:37:51,474 | INFO     | .. there are 18 such processes running
[2025-11-25 18:38:27] 2025-11-25 23:37:51,814 | INFO     | process IDs to be killed: [939011] (in reverse order)
[2025-11-25 18:38:27] 2025-11-25 23:37:52,042 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 18:38:27] 2025-11-25 23:37:52,042 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 18:38:27] 2025-11-25 23:37:52,057 | INFO     | did not find any defunct processes belonging to 939011
[2025-11-25 18:38:27] 2025-11-25 23:37:52,071 | INFO     | did not find any defunct processes belonging to 939011
[2025-11-25 18:38:27] 2025-11-25 23:37:52,076 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 18:38:27] 2025-11-25 23:37:52,076 | INFO     | ready for new job
[2025-11-25 18:38:27] 2025-11-25 23:37:52,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 18:38:27] 2025-11-25 23:37:52,086 | INFO     | ***************************************
[2025-11-25 18:38:27] 2025-11-25 23:37:52,086 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 18:38:27] 2025-11-25 23:37:52,086 | INFO     | ***************************************
[2025-11-25 18:38:27] 2025-11-25 23:37:52,086 | INFO     | 
[2025-11-25 18:38:27] 2025-11-25 23:37:52,100 | INFO     | architecture information:
[2025-11-25 18:38:27] 2025-11-25 23:37:52,101 | INFO     | executing command: cat /etc/os-release
[2025-11-25 18:38:27] 2025-11-25 23:37:52,147 | INFO     | cat /etc/os-release:
[2025-11-25 18:38:27] NAME="CentOS Linux"
[2025-11-25 18:38:27] VERSION="7 (Core)"
[2025-11-25 18:38:27] ID="centos"
[2025-11-25 18:38:27] ID_LIKE="rhel fedora"
[2025-11-25 18:38:27] VERSION_ID="7"
[2025-11-25 18:38:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 18:38:27] ANSI_COLOR="0;31"
[2025-11-25 18:38:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 18:38:27] HOME_URL="https://www.centos.org/"
[2025-11-25 18:38:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 18:38:27] 
[2025-11-25 18:38:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 18:38:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 18:38:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 18:38:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 18:38:27] 
[2025-11-25 18:38:27] 2025-11-25 23:37:52,148 | INFO     | ***************************************
[2025-11-25 18:38:27] 2025-11-25 23:37:52,651 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 18:38:27] 2025-11-25 23:37:52,760 | INFO     | sufficient remaining disk space (122729529344 B)
[2025-11-25 18:38:27] 2025-11-25 23:37:52,761 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 18:38:27] 2025-11-25 23:37:52,761 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 18:38:27] 2025-11-25 23:37:52,761 | INFO     | update_server=False
[2025-11-25 18:38:27] 2025-11-25 23:37:52,761 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 18:38:27] 2025-11-25 23:37:52,761 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 18:38:27] 2025-11-25 23:37:52,762 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 18:38:27] 2025-11-25 23:37:52,974 | INFO     | all data control threads have been joined
[2025-11-25 18:38:27] 2025-11-25 23:37:53,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:38:27] 2025-11-25 23:37:53,102 | INFO     | aborting loop
[2025-11-25 18:38:27] 2025-11-25 23:37:53,746 | INFO     | all payload control threads have been joined
[2025-11-25 18:38:27] 2025-11-25 23:37:53,785 | INFO     | [job] retrieve thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:53,853 | INFO     | [payload] failed_post thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:53,868 | INFO     | [payload] validate_post thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:53,895 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 18:38:27] 2025-11-25 23:37:53,947 | INFO     | all job control threads have been joined
[2025-11-25 18:38:27] 2025-11-25 23:37:53,980 | INFO     | [data] copytool_in thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,004 | INFO     | [data] control thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,129 | INFO     | [job] job monitor thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,600 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,673 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,774 | INFO     | [data] copytool_out thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,778 | INFO     | [payload] control thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,901 | INFO     | [job] queue monitor thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:54,953 | INFO     | [job] control thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:55,166 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:55,209 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:55,216 | INFO     | [job] validate thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:37:56,782 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 18:38:27] 2025-11-25 23:38:10,149 | INFO     | [monitor] cgroup control has ended
[2025-11-25 18:38:27] 2025-11-25 23:38:12,042 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140641513129792)>', '<ExcThread(monitor, started 140641036130048)>']
[2025-11-25 18:38:27] 2025-11-25 23:38:17,076 | INFO     | all workflow threads have been joined
[2025-11-25 18:38:27] 2025-11-25 23:38:17,076 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 18:38:27] 2025-11-25 23:38:17,077 | INFO     | traces error code: 0
[2025-11-25 18:38:27] 2025-11-25 23:38:17,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 18:38:27] 2025-11-25 23:38:25,846 | INFO     | PID=928596 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 18:38:27] 2025-11-25 23:38:25,850 | INFO     | .. there are 18 such processes running
[2025-11-25 18:38:27] 2025-11-25 23:38:25,851 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 18:38:27] 2025-11-25 23:38:25,852 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 18:38:27] 2025-11-25 23:38:25,852 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 18:38:27] 2025-11-25 23:38:25,852 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 18:38:27] 2025-11-25 23:38:25,852 | INFO     | [monitor] control thread has ended
[2025-11-25 18:38:27] 2025-11-25 23:38:26,660 [wrapper] ==== pilot stdout END ====
[2025-11-25 18:38:27] 2025-11-25 23:38:26,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 18:38:27] 2025-11-25 23:38:26,843 [wrapper] pilotpid: 928596
[2025-11-25 18:38:27] 2025-11-25 23:38:26,967 [wrapper] Pilot exit status: 0
[2025-11-25 18:38:27] 2025-11-25 23:38:27,092 [wrapper] pandaids: 6895381180
[2025-11-25 18:38:27] 2025-11-25 23:38:27,322 [wrapper] cleanup supervisor_pilot 3021517 928597
[2025-11-25 18:38:27] 2025-11-25 23:38:27,325 [wrapper] Test setup, not cleaning
[2025-11-25 18:38:27] 2025-11-25 23:38:27,328 [wrapper] apfmon messages muted
[2025-11-25 18:38:27] 2025-11-25 23:38:27,331 [wrapper] ==== wrapper stdout END ====
[2025-11-25 18:38:27] 2025-11-25 23:38:27,333 [wrapper] ==== wrapper stderr END ====
[2025-11-25 18:38:27]  *** Error codes and diagnostics ***
[2025-11-25 18:38:27]     "exeErrorCode": 0,
[2025-11-25 18:38:27]     "exeErrorDiag": "",
[2025-11-25 18:38:27]     "pilotErrorCode": 0,
[2025-11-25 18:38:27]     "pilotErrorDiag": "",
[2025-11-25 18:38:27]  *** Listing of results directory ***
[2025-11-25 18:38:27] total 1327952
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 21:53 pilot3.tar.gz
[2025-11-25 18:38:27] -rwx------. 1 boincer umatlas     36292 Nov 23 22:08 runpilot2-wrapper.sh
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 22:08 queuedata.json
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 18:38:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-25 18:38:27] -rw-r--r--. 2 boincer umatlas 409661005 Nov 25 00:02 EVNT.47483658._000992.pool.root.1
[2025-11-25 18:38:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-25 18:38:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:02 shared
[2025-11-25 18:38:27] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:02 input.tar.gz
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:02 boinc_lockfile
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:02 pandaJob.out
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-25 18:38:27] drwx------. 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas       533 Nov 25 18:04 boinc_task_state.xml
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas      6881 Nov 25 18:31 init_data.xml
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas 924509878 Nov 25 18:35 HITS.47556137._009784.pool.root.1
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas      1060 Nov 25 18:36 memory_monitor_summary.json
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas   1516240 Nov 25 18:37 agis_ddmendpoints.agis.ALL.json
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas   2650117 Nov 25 18:37 log.47556137._009784.job.log.tgz.1
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas      8625 Nov 25 18:37 heartbeat.json
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 18:38 boinc_mmap_file
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas        29 Nov 25 18:38 wrapper_checkpoint.txt
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas        95 Nov 25 18:38 pilot_heartbeat.json
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas       822 Nov 25 18:38 pilotlog.txt
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas   8216592 Nov 25 18:38 log.47556137._009784.job.log.1
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas       353 Nov 25 18:38 output.list
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas       620 Nov 25 18:38 runtime_log
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas  10885120 Nov 25 18:38 result.tar.gz
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas      9355 Nov 25 18:38 runtime_log.err
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas       662 Nov 25 18:38 7UvKDmu7bh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaNLKDmwNMIZn.diag
[2025-11-25 18:38:27] -rw-r--r--. 1 boincer umatlas     21897 Nov 25 18:38 stderr.txt
[2025-11-25 18:38:27] HITS file was successfully produced:
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas 924509878 Nov 25 18:35 shared/HITS.pool.root.1
[2025-11-25 18:38:27]  *** Contents of shared directory: ***
[2025-11-25 18:38:27] total 1314136
[2025-11-25 18:38:27] -rw-r--r--. 2 boincer umatlas 409661005 Nov 25 00:02 ATLAS.root_0
[2025-11-25 18:38:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-25 18:38:27] -rw-r--r--. 2 boincer umatlas    590098 Nov 25 00:02 input.tar.gz
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas 924509878 Nov 25 18:35 HITS.pool.root.1
[2025-11-25 18:38:27] -rw-------. 1 boincer umatlas  10885120 Nov 25 18:38 result.tar.gz
18:38:29 (924756): run_atlas exited; CPU time 282147.356797
18:38:29 (924756): called boinc_finish(0)

</stderr_txt>
]]>

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