Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:26 (1117590): wrapper (7.7.26015): starting
00:00:26 (1117590): wrapper: running run_atlas (--nthreads 9)
[2025-11-25 00:00:26] Arguments: --nthreads 9
[2025-11-25 00:00:26] Threads: 9
[2025-11-25 00:00:26] Checking for CVMFS
[2025-11-25 00:00:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:00:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:00:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:00:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:00:29] 2.13.3.0 4306 25084 322512 153270 0 185 22018767 32935936 27091 16776704 0 142355816 99.786 77867800 31857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:00:29] CVMFS is ok
[2025-11-25 00:00:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:00:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:00:29] Further information can be found at the LHC@home message board.
[2025-11-25 00:00:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:00:29] Checking for apptainer binary...
[2025-11-25 00:00:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:00:29] Running /usr/bin/apptainer --version
[2025-11-25 00:00:30] apptainer version 1.4.4-1.el9
[2025-11-25 00:00:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:00:31] c-6-4.aglt2.org
[2025-11-25 00:00:31] apptainer works
[2025-11-25 00:00:31] Set ATHENA_PROC_NUMBER=9
[2025-11-25 00:00:31] Set ATHENA_CORE_NUMBER=9
[2025-11-25 00:00:31] Starting ATLAS job with PandaID=6894274128
[2025-11-25 00:00:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:00:11 (1117590): BOINC client no longer exists - exiting
16:00:11 (1117590): timer handler: client dead, exiting
16:12:51 (329700): wrapper (7.7.26015): starting
16:12:51 (329700): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:12:51] Arguments: --nthreads 8
[2025-11-25 16:12:51] Threads: 8
[2025-11-25 16:12:51] This job has been restarted, cleaning up previous attempt
[2025-11-25 16:12:52] Checking for CVMFS
[2025-11-25 16:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:12:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:12:52] 2.13.3.0 4306 26057 331044 153297 2 266 28695245 32935937 24449 16776704 0 146146074 99.789 79229750 31895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:12:52] CVMFS is ok
[2025-11-25 16:12:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:12:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:12:52] Further information can be found at the LHC@home message board.
[2025-11-25 16:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:12:52] Checking for apptainer binary...
[2025-11-25 16:12:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:12:52] Running /usr/bin/apptainer --version
[2025-11-25 16:12:52] apptainer version 1.4.4-1.el9
[2025-11-25 16:12:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:12:52] c-6-4.aglt2.org
[2025-11-25 16:12:52] apptainer works
[2025-11-25 16:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:12:52] Starting ATLAS job with PandaID=6894274128
[2025-11-25 16:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 10:53:45]  *** The last 200 lines of the pilot log: ***
[2025-11-26 10:53:45] 2025-11-26 15:52:50,284 | INFO     | fitting pss+swap vs Time
[2025-11-26 10:53:45] 2025-11-26 15:52:50,285 | INFO     | sum of square deviations: 413864492808.792
[2025-11-26 10:53:45] 2025-11-26 15:52:50,316 | INFO     | sum of deviations: 2419564937933.1333
[2025-11-26 10:53:45] 2025-11-26 15:52:50,317 | INFO     | mean x: 1764138761.4123523
[2025-11-26 10:53:45] 2025-11-26 15:52:50,317 | INFO     | mean y: 2975808.8873751136
[2025-11-26 10:53:45] 2025-11-26 15:52:50,317 | INFO     | intersect: -10310661545.680666
[2025-11-26 10:53:45] 2025-11-26 15:52:50,319 | INFO     | chi2: 7.503648167479356
[2025-11-26 10:53:45] 2025-11-26 15:52:50,328 | INFO     | sum of square deviations: 408252285093.7738
[2025-11-26 10:53:45] 2025-11-26 15:52:50,381 | INFO     | sum of deviations: 2803767464894.6484
[2025-11-26 10:53:45] 2025-11-26 15:52:50,381 | INFO     | mean x: 1764138608.9187956
[2025-11-26 10:53:45] 2025-11-26 15:52:50,381 | INFO     | mean y: 2986247.366788321
[2025-11-26 10:53:45] 2025-11-26 15:52:50,381 | INFO     | intersect: -12112645718.085392
[2025-11-26 10:53:45] 2025-11-26 15:52:50,383 | INFO     | chi2: 4.2916533355537245
[2025-11-26 10:53:45] 2025-11-26 15:52:50,383 | INFO     | current chi2=4.2916533355537245 (change=42.80577607364835 %)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,384 | INFO     | sum of square deviations: 402691055078.66156
[2025-11-26 10:53:45] 2025-11-26 15:52:50,414 | INFO     | sum of deviations: 3055250091432.836
[2025-11-26 10:53:45] 2025-11-26 15:52:50,414 | INFO     | mean x: 1764138456.425298
[2025-11-26 10:53:45] 2025-11-26 15:52:50,414 | INFO     | mean y: 2993135.2740604947
[2025-11-26 10:53:45] 2025-11-26 15:52:50,414 | INFO     | intersect: -13381670150.183609
[2025-11-26 10:53:45] 2025-11-26 15:52:50,416 | INFO     | chi2: 2.507774723720632
[2025-11-26 10:53:45] 2025-11-26 15:52:50,416 | INFO     | current chi2=2.507774723720632 (change=41.5662326929985 %)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,417 | INFO     | sum of square deviations: 397180237819.2534
[2025-11-26 10:53:45] 2025-11-26 15:52:50,477 | INFO     | sum of deviations: 3080132731301.864
[2025-11-26 10:53:45] 2025-11-26 15:52:50,477 | INFO     | mean x: 1764138303.9272559
[2025-11-26 10:53:45] 2025-11-26 15:52:50,477 | INFO     | mean y: 2993820.605893186
[2025-11-26 10:53:45] 2025-11-26 15:52:50,477 | INFO     | intersect: -13677898668.668636
[2025-11-26 10:53:45] 2025-11-26 15:52:50,479 | INFO     | chi2: 2.3913324847201527
[2025-11-26 10:53:45] 2025-11-26 15:52:50,479 | INFO     | current chi2=2.3913324847201527 (change=4.643249566999419 %)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,479 | INFO     | right removable region: 1085
[2025-11-26 10:53:45] 2025-11-26 15:52:50,481 | INFO     | sum of square deviations: 408251470503.44434
[2025-11-26 10:53:45] 2025-11-26 15:52:50,549 | INFO     | sum of deviations: 2134176884170.6423
[2025-11-26 10:53:45] 2025-11-26 15:52:50,550 | INFO     | mean x: 1764138913.9169707
[2025-11-26 10:53:45] 2025-11-26 15:52:50,550 | INFO     | mean y: 2983552.8202554747
[2025-11-26 10:53:45] 2025-11-26 15:52:50,556 | INFO     | intersect: -9219235502.274948
[2025-11-26 10:53:45] 2025-11-26 15:52:50,557 | INFO     | chi2: 5.579288706730269
[2025-11-26 10:53:45] 2025-11-26 15:52:50,594 | INFO     | current chi2=5.579288706730269 (change=25.645651525736746 %)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,595 | INFO     | sum of square deviations: 402689627323.57117
[2025-11-26 10:53:45] 2025-11-26 15:52:50,646 | INFO     | time since job start (67187s) is within the limit (172800.0s)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,647 | INFO     | sum of deviations: 2028476801101.768
[2025-11-26 10:53:45] 2025-11-26 15:52:50,647 | INFO     | mean x: 1764139066.4188817
[2025-11-26 10:53:45] 2025-11-26 15:52:50,647 | INFO     | mean y: 2986450.545371219
[2025-11-26 10:53:45] 2025-11-26 15:52:50,648 | INFO     | intersect: -8883547811.417643
[2025-11-26 10:53:45] 2025-11-26 15:52:50,649 | INFO     | chi2: 5.458621360510234
[2025-11-26 10:53:45] 2025-11-26 15:52:50,649 | INFO     | current chi2=5.458621360510234 (change=2.1627729368884334 %)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,649 | INFO     | left removable region: 20
[2025-11-26 10:53:45] 2025-11-26 15:52:50,651 | INFO     | sum of square deviations: 374582425251.84424
[2025-11-26 10:53:45] 2025-11-26 15:52:50,680 | INFO     | sum of deviations: 2522104696493.6626
[2025-11-26 10:53:45] 2025-11-26 15:52:50,681 | INFO     | mean x: 1764138883.4356809
[2025-11-26 10:53:45] 2025-11-26 15:52:50,681 | INFO     | mean y: 3009262.5352112674
[2025-11-26 10:53:45] 2025-11-26 15:52:50,681 | INFO     | intersect: -11875132004.206749
[2025-11-26 10:53:45] 2025-11-26 15:52:50,682 | INFO     | chi2: 0.2346088874982499
[2025-11-26 10:53:45] 2025-11-26 15:52:50,683 | INFO     | current memory leak: 6.73 B/s (using 1065 data points, chi2=0.23)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,684 | INFO     | could have reported an average CPU frequency of 2599 MHz (40 samples)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,684 | INFO     | ..............................
[2025-11-26 10:53:45] 2025-11-26 15:52:50,684 | INFO     | . Timing measurements:
[2025-11-26 10:53:45] 2025-11-26 15:52:50,684 | INFO     | . get job = 0 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,684 | INFO     | . initial setup = 2 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,685 | INFO     | . payload setup = 5 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,685 | INFO     | . stage-in = 0 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,685 | INFO     | . payload execution = 67140 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,685 | INFO     | . stage-out = 3 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,685 | INFO     | . log creation = 0 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,685 | INFO     | ..............................
[2025-11-26 10:53:45] 2025-11-26 15:52:50,793 | INFO     | 
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | job summary report
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | --------------------------------------------------
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | PanDA job id: 6894274128
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | task id: 47533967
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | errors: (none)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 10:53:45] 2025-11-26 15:52:50,794 | INFO     | pilot state: finished 
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | transexitcode: 0
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | exeerrorcode: 0
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | exeerrordiag: 
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | exitcode: 0
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | exitmsg: OK
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | cpuconsumptiontime: 306554 s
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | nevents: 1000
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | neventsw: 0
[2025-11-26 10:53:45] 2025-11-26 15:52:50,795 | INFO     | pid: 361304
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | pgrp: 361304
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | corecount: 8
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | event service: False
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | sizes: {0: 2284309, 4: 2284571, 11: 2284599, 67150: 2340875, 67151: 2340874, 67155: 2350108, 67172: 2350298}
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | --------------------------------------------------
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | 
[2025-11-26 10:53:45] 2025-11-26 15:52:50,796 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 10:53:45] 2025-11-26 15:52:50,816 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,816 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,818 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 10:53:45] 2025-11-26 15:52:50,819 | INFO     | job 6894274128 has completed (purged errors)
[2025-11-26 10:53:45] 2025-11-26 15:52:50,819 | INFO     | overall cleanup function is called
[2025-11-26 10:53:45] 2025-11-26 15:52:51,861 | INFO     | --- collectZombieJob: --- 10, [361304]
[2025-11-26 10:53:45] 2025-11-26 15:52:51,861 | INFO     | zombie collector waiting for pid 361304
[2025-11-26 10:53:45] 2025-11-26 15:52:51,861 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 10:53:45] 2025-11-26 15:52:51,861 | INFO     | collected zombie processes
[2025-11-26 10:53:45] 2025-11-26 15:52:51,861 | INFO     | will attempt to kill all subprocesses of pid=361304
[2025-11-26 10:53:45] 2025-11-26 15:52:52,616 | INFO     | process IDs to be killed: [361304] (in reverse order)
[2025-11-26 10:53:45] 2025-11-26 15:52:52,911 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 10:53:45] 2025-11-26 15:52:52,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 10:53:45] 2025-11-26 15:52:52,982 | INFO     | did not find any defunct processes belonging to 361304
[2025-11-26 10:53:45] 2025-11-26 15:52:53,012 | INFO     | did not find any defunct processes belonging to 361304
[2025-11-26 10:53:45] 2025-11-26 15:52:53,016 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 10:53:45] 2025-11-26 15:52:53,016 | INFO     | ready for new job
[2025-11-26 10:53:45] 2025-11-26 15:52:53,016 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 10:53:45] 2025-11-26 15:52:53,025 | INFO     | ***************************************
[2025-11-26 10:53:45] 2025-11-26 15:52:53,026 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 10:53:45] 2025-11-26 15:52:53,026 | INFO     | ***************************************
[2025-11-26 10:53:45] 2025-11-26 15:52:53,026 | INFO     | 
[2025-11-26 10:53:45] 2025-11-26 15:52:53,028 | INFO     | architecture information:
[2025-11-26 10:53:45] 2025-11-26 15:52:53,028 | INFO     | executing command: cat /etc/os-release
[2025-11-26 10:53:45] 2025-11-26 15:52:53,086 | INFO     | cat /etc/os-release:
[2025-11-26 10:53:45] NAME="CentOS Linux"
[2025-11-26 10:53:45] VERSION="7 (Core)"
[2025-11-26 10:53:45] ID="centos"
[2025-11-26 10:53:45] ID_LIKE="rhel fedora"
[2025-11-26 10:53:45] VERSION_ID="7"
[2025-11-26 10:53:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 10:53:45] ANSI_COLOR="0;31"
[2025-11-26 10:53:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 10:53:45] HOME_URL="https://www.centos.org/"
[2025-11-26 10:53:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 10:53:45] 
[2025-11-26 10:53:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 10:53:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 10:53:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 10:53:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 10:53:45] 
[2025-11-26 10:53:45] 2025-11-26 15:52:53,086 | INFO     | ***************************************
[2025-11-26 10:53:45] 2025-11-26 15:52:53,593 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 10:53:45] 2025-11-26 15:52:53,640 | INFO     | sufficient remaining disk space (70058508288 B)
[2025-11-26 10:53:45] 2025-11-26 15:52:53,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 10:53:45] 2025-11-26 15:52:53,640 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 10:53:45] 2025-11-26 15:52:53,640 | INFO     | update_server=False
[2025-11-26 10:53:45] 2025-11-26 15:52:53,641 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 10:53:45] 2025-11-26 15:52:53,641 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:53:45] 2025-11-26 15:52:53,641 | INFO     | aborting loop
[2025-11-26 10:53:45] 2025-11-26 15:52:53,906 | INFO     | all data control threads have been joined
[2025-11-26 10:53:45] 2025-11-26 15:52:54,320 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 10:53:45] 2025-11-26 15:52:54,647 | INFO     | [job] retrieve thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:54,649 | INFO     | [job] job monitor thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:54,687 | INFO     | all payload control threads have been joined
[2025-11-26 10:53:45] 2025-11-26 15:52:54,761 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:54,853 | INFO     | [payload] failed_post thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:54,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 10:53:45] 2025-11-26 15:52:54,913 | INFO     | [data] control thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:55,075 | INFO     | all job control threads have been joined
[2025-11-26 10:53:45] 2025-11-26 15:52:55,195 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:55,409 | INFO     | [payload] validate_post thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:55,510 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:55,703 | INFO     | [payload] control thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:55,824 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 10:53:45] 2025-11-26 15:52:55,952 | INFO     | [data] copytool_in thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:55,972 | INFO     | [job] validate thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:56,082 | INFO     | [job] control thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:56,830 | INFO     | [job] queue monitor thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:56,871 | INFO     | [data] copytool_out thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:52:58,328 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:53:03,444 | INFO     | [monitor] cgroup control has ended
[2025-11-26 10:53:45] 2025-11-26 15:53:04,626 | INFO     | job.realtimelogging is not enabled
[2025-11-26 10:53:45] 2025-11-26 15:53:05,632 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 10:53:45] 2025-11-26 15:53:06,548 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006462900032)>', '<ExcThread(monitor, started 140005976557312)>']
[2025-11-26 10:53:45] 2025-11-26 15:53:11,575 | INFO     | all workflow threads have been joined
[2025-11-26 10:53:45] 2025-11-26 15:53:11,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 10:53:45] 2025-11-26 15:53:11,575 | INFO     | traces error code: 0
[2025-11-26 10:53:45] 2025-11-26 15:53:11,575 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 10:53:45] 2025-11-26 15:53:25,022 | INFO     | PID=340711 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 10:53:45] 2025-11-26 15:53:25,022 | INFO     | .. there are 43 such processes running
[2025-11-26 10:53:45] 2025-11-26 15:53:25,022 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 10:53:45] 2025-11-26 15:53:25,023 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 10:53:45] 2025-11-26 15:53:25,023 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 10:53:45] 2025-11-26 15:53:25,023 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 10:53:45] 2025-11-26 15:53:25,023 | INFO     | [monitor] control thread has ended
[2025-11-26 10:53:45] 2025-11-26 15:53:25,275 [wrapper] ==== pilot stdout END ====
[2025-11-26 10:53:45] 2025-11-26 15:53:25,296 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 10:53:45] 2025-11-26 15:53:25,315 [wrapper] pilotpid: 340711
[2025-11-26 10:53:45] 2025-11-26 15:53:25,327 [wrapper] Pilot exit status: 0
[2025-11-26 10:53:45] 2025-11-26 15:53:25,423 [wrapper] pandaids: 6894274128 6894274128
[2025-11-26 10:53:45] 2025-11-26 15:53:25,705 [wrapper] cleanup supervisor_pilot   48126 340712
[2025-11-26 10:53:45] 2025-11-26 15:53:25,709 [wrapper] Test setup, not cleaning
[2025-11-26 10:53:45] 2025-11-26 15:53:25,712 [wrapper] apfmon messages muted
[2025-11-26 10:53:45] 2025-11-26 15:53:25,714 [wrapper] ==== wrapper stdout END ====
[2025-11-26 10:53:45] 2025-11-26 15:53:25,716 [wrapper] ==== wrapper stderr END ====
[2025-11-26 10:53:45]  *** Error codes and diagnostics ***
[2025-11-26 10:53:45]     "exeErrorCode": 0,
[2025-11-26 10:53:45]     "exeErrorDiag": "",
[2025-11-26 10:53:45]     "pilotErrorCode": 0,
[2025-11-26 10:53:45]     "pilotErrorDiag": "",
[2025-11-26 10:53:45]  *** Listing of results directory ***
[2025-11-26 10:53:45] total 1717992
[2025-11-26 10:53:45] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas    576529 Nov 21 02:07 pilot3.tar.gz
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas      5112 Nov 21 02:20 queuedata.json
[2025-11-26 10:53:45] -rwx------. 1 boincer umatlas     36292 Nov 21 02:21 runpilot2-wrapper.sh
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 10:53:45] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:00 run_atlas
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:00 job.xml
[2025-11-26 10:53:45] -rw-r--r--. 3 boincer umatlas 408424307 Nov 25 00:00 EVNT.47493127._002302.pool.root.1
[2025-11-26 10:53:45] -rw-r--r--. 3 boincer umatlas 408424307 Nov 25 00:00 ATLAS.root_0
[2025-11-26 10:53:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 10:53:45] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:00 shared
[2025-11-26 10:53:45] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:00 input.tar.gz
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:00 boinc_lockfile
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas      2783 Nov 25 16:12 pandaJob.out
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas        57 Nov 25 16:12 setup.sh.local
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas    991893 Nov 25 16:13 agis_schedconf.cvmfs.json
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas       533 Nov 26 10:38 boinc_task_state.xml
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas      6658 Nov 26 10:46 init_data.xml
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas 916730385 Nov 26 10:51 HITS.47533967._002731.pool.root.1
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas      1068 Nov 26 10:52 memory_monitor_summary.json
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:52 agis_ddmendpoints.agis.ALL.json
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas   2222250 Nov 26 10:52 log.47533967._002731.job.log.tgz.1
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas        96 Nov 26 10:52 pilot_heartbeat.json
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas      8638 Nov 26 10:52 heartbeat.json
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas       822 Nov 26 10:53 pilotlog.txt
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas   8641171 Nov 26 10:53 log.47533967._002731.job.log.1
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas       353 Nov 26 10:53 output.list
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas       620 Nov 26 10:53 runtime_log
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas  10885120 Nov 26 10:53 result.tar.gz
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas      9413 Nov 26 10:53 runtime_log.err
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas       786 Nov 26 10:53 0CZKDmGdag8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLBJKDmmmIz1m.diag
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas        29 Nov 26 10:53 wrapper_checkpoint.txt
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 10:53 boinc_mmap_file
[2025-11-26 10:53:45] -rw-r--r--. 1 boincer umatlas     23394 Nov 26 10:53 stderr.txt
[2025-11-26 10:53:45] HITS file was successfully produced:
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas 916730385 Nov 26 10:51 shared/HITS.pool.root.1
[2025-11-26 10:53:45]  *** Contents of shared directory: ***
[2025-11-26 10:53:45] total 1305332
[2025-11-26 10:53:45] -rw-r--r--. 3 boincer umatlas 408424307 Nov 25 00:00 ATLAS.root_0
[2025-11-26 10:53:45] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:00 start_atlas.sh
[2025-11-26 10:53:45] -rw-r--r--. 2 boincer umatlas    590105 Nov 25 00:00 input.tar.gz
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas 916730385 Nov 26 10:51 HITS.pool.root.1
[2025-11-26 10:53:45] -rw-------. 1 boincer umatlas  10885120 Nov 26 10:53 result.tar.gz
10:53:47 (329700): run_atlas exited; CPU time 309356.966275
10:53:47 (329700): called boinc_finish(0)

</stderr_txt>
]]>

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