Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:48:17 (536026): wrapper (7.7.26015): starting
20:48:17 (536026): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 20:48:17] Arguments: --nthreads 8
[2025-11-24 20:48:17] Threads: 8
[2025-11-24 20:48:17] Checking for CVMFS
[2025-11-24 20:48:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:48:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:48:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:48:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:48:17] 2.13.3.0 4306 24892 326152 153265 0 255 21355182 32935937 26656 16776704 0 141757898 99.785 77728279 31865 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 20:48:17] CVMFS is ok
[2025-11-24 20:48:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:48:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:48:17] Further information can be found at the LHC@home message board.
[2025-11-24 20:48:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:48:17] Checking for apptainer binary...
[2025-11-24 20:48:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:48:17] Running /usr/bin/apptainer --version
[2025-11-24 20:48:17] apptainer version 1.4.4-1.el9
[2025-11-24 20:48:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:48:17] c-6-4.aglt2.org
[2025-11-24 20:48:17] apptainer works
[2025-11-24 20:48:17] Set ATHENA_PROC_NUMBER=8
[2025-11-24 20:48:17] Set ATHENA_CORE_NUMBER=8
[2025-11-24 20:48:17] Starting ATLAS job with PandaID=6895354858
[2025-11-24 20:48:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:00:04 (536026): BOINC client no longer exists - exiting
16:00:04 (536026): timer handler: client dead, exiting
16:12:51 (329697): wrapper (7.7.26015): starting
16:12:51 (329697): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:12:51] Arguments: --nthreads 8
[2025-11-25 16:12:51] Threads: 8
[2025-11-25 16:12:51] This job has been restarted, cleaning up previous attempt
[2025-11-25 16:12:52] Checking for CVMFS
[2025-11-25 16:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:12:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:12:52] 2.13.3.0 4306 26057 331044 153297 2 266 28695245 32935937 24449 16776704 0 146146074 99.789 79229750 31895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:12:52] CVMFS is ok
[2025-11-25 16:12:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:12:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:12:52] Further information can be found at the LHC@home message board.
[2025-11-25 16:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:12:52] Checking for apptainer binary...
[2025-11-25 16:12:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:12:52] Running /usr/bin/apptainer --version
[2025-11-25 16:12:52] apptainer version 1.4.4-1.el9
[2025-11-25 16:12:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:12:52] c-6-4.aglt2.org
[2025-11-25 16:12:52] apptainer works
[2025-11-25 16:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:12:52] Starting ATLAS job with PandaID=6895354858
[2025-11-25 16:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:00:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:00:30] 2025-11-26 15:59:56,223 | INFO     | sum of square deviations: 421810824140.5558
[2025-11-26 11:00:30] 2025-11-26 15:59:56,255 | INFO     | sum of deviations: 2692245687632.2095
[2025-11-26 11:00:30] 2025-11-26 15:59:56,255 | INFO     | mean x: 1764138975.036101
[2025-11-26 11:00:30] 2025-11-26 15:59:56,255 | INFO     | mean y: 2941069.1696750904
[2025-11-26 11:00:30] 2025-11-26 15:59:56,255 | INFO     | intersect: -11256835295.275213
[2025-11-26 11:00:30] 2025-11-26 15:59:56,257 | INFO     | chi2: 6.474097996092557
[2025-11-26 11:00:30] 2025-11-26 15:59:56,259 | INFO     | sum of square deviations: 416126901773.70386
[2025-11-26 11:00:30] 2025-11-26 15:59:56,290 | INFO     | sum of deviations: 3067174257035.246
[2025-11-26 11:00:30] 2025-11-26 15:59:56,290 | INFO     | mean x: 1764138822.5430644
[2025-11-26 11:00:30] 2025-11-26 15:59:56,291 | INFO     | mean y: 2951130.5421577515
[2025-11-26 11:00:30] 2025-11-26 15:59:56,291 | INFO     | intersect: -13000104329.888271
[2025-11-26 11:00:30] 2025-11-26 15:59:56,292 | INFO     | chi2: 3.3904180634629455
[2025-11-26 11:00:30] 2025-11-26 15:59:56,293 | INFO     | current chi2=3.3904180634629455 (change=47.6310357750341 %)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,294 | INFO     | sum of square deviations: 410494148498.44135
[2025-11-26 11:00:30] 2025-11-26 15:59:56,301 | INFO     | time since job start (67613s) is within the limit (172800.0s)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,326 | INFO     | sum of deviations: 3216627732467.9263
[2025-11-26 11:00:30] 2025-11-26 15:59:56,327 | INFO     | mean x: 1764138670.0482695
[2025-11-26 11:00:30] 2025-11-26 15:59:56,327 | INFO     | mean y: 2955166.171220401
[2025-11-26 11:00:30] 2025-11-26 15:59:56,327 | INFO     | intersect: -13820816477.720787
[2025-11-26 11:00:30] 2025-11-26 15:59:56,328 | INFO     | chi2: 2.2894961076150055
[2025-11-26 11:00:30] 2025-11-26 15:59:56,329 | INFO     | current chi2=2.2894961076150055 (change=32.471569441895525 %)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,330 | INFO     | sum of square deviations: 404912197798.5339
[2025-11-26 11:00:30] 2025-11-26 15:59:56,362 | INFO     | sum of deviations: 3189340151795.096
[2025-11-26 11:00:30] 2025-11-26 15:59:56,362 | INFO     | mean x: 1764138517.5498629
[2025-11-26 11:00:30] 2025-11-26 15:59:56,363 | INFO     | mean y: 2954420.6770356814
[2025-11-26 11:00:30] 2025-11-26 15:59:56,363 | INFO     | intersect: -13892497081.99545
[2025-11-26 11:00:30] 2025-11-26 15:59:56,364 | INFO     | chi2: 2.2850195225176955
[2025-11-26 11:00:30] 2025-11-26 15:59:56,364 | INFO     | current chi2=2.2850195225176955 (change=0.19552708923245965 %)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,364 | INFO     | right removable region: 1092
[2025-11-26 11:00:30] 2025-11-26 15:59:56,366 | INFO     | sum of square deviations: 416126133178.0345
[2025-11-26 11:00:30] 2025-11-26 15:59:56,398 | INFO     | sum of deviations: 2410927016637.8887
[2025-11-26 11:00:30] 2025-11-26 15:59:56,398 | INFO     | mean x: 1764139127.539438
[2025-11-26 11:00:30] 2025-11-26 15:59:56,399 | INFO     | mean y: 2948606.1749773347
[2025-11-26 11:00:30] 2025-11-26 15:59:56,399 | INFO     | intersect: -10218016492.100021
[2025-11-26 11:00:30] 2025-11-26 15:59:56,400 | INFO     | chi2: 4.5708722085867
[2025-11-26 11:00:30] 2025-11-26 15:59:56,400 | INFO     | current chi2=4.5708722085867 (change=29.397543698821814 %)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,402 | INFO     | sum of square deviations: 410492880805.1563
[2025-11-26 11:00:30] 2025-11-26 15:59:56,415 | INFO     | monitor loop #4165: job 0:6895354858 is in state 'finished'
[2025-11-26 11:00:30] 2025-11-26 15:59:56,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,436 | INFO     | sum of deviations: 2307927267989.2563
[2025-11-26 11:00:30] 2025-11-26 15:59:56,436 | INFO     | mean x: 1764139280.0409837
[2025-11-26 11:00:30] 2025-11-26 15:59:56,436 | INFO     | mean y: 2951394.1721311477
[2025-11-26 11:00:30] 2025-11-26 15:59:56,436 | INFO     | intersect: -9915625368.843872
[2025-11-26 11:00:30] 2025-11-26 15:59:56,438 | INFO     | chi2: 4.4656934832188595
[2025-11-26 11:00:30] 2025-11-26 15:59:56,438 | INFO     | current chi2=4.4656934832188595 (change=2.3010646670509707 %)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,438 | INFO     | left removable region: 20
[2025-11-26 11:00:30] 2025-11-26 15:59:56,440 | INFO     | sum of square deviations: 382019260429.05896
[2025-11-26 11:00:30] 2025-11-26 15:59:56,470 | INFO     | sum of deviations: 2650563033162.512
[2025-11-26 11:00:30] 2025-11-26 15:59:56,470 | INFO     | mean x: 1764139097.0606344
[2025-11-26 11:00:30] 2025-11-26 15:59:56,470 | INFO     | mean y: 2969110.038246269
[2025-11-26 11:00:30] 2025-11-26 15:59:56,471 | INFO     | intersect: -12237151638.779175
[2025-11-26 11:00:30] 2025-11-26 15:59:56,472 | INFO     | chi2: 0.19316059440659347
[2025-11-26 11:00:30] 2025-11-26 15:59:56,472 | INFO     | current memory leak: 6.94 B/s (using 1072 data points, chi2=0.19)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,474 | INFO     | could have reported an average CPU frequency of 2600 MHz (40 samples)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,474 | INFO     | ..............................
[2025-11-26 11:00:30] 2025-11-26 15:59:56,474 | INFO     | . Timing measurements:
[2025-11-26 11:00:30] 2025-11-26 15:59:56,474 | INFO     | . get job = 0 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,474 | INFO     | . initial setup = 2 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,474 | INFO     | . payload setup = 5 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,475 | INFO     | . stage-in = 0 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,475 | INFO     | . payload execution = 67574 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,475 | INFO     | . stage-out = 4 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,475 | INFO     | . log creation = 1 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,475 | INFO     | ..............................
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | 
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | job summary report
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | --------------------------------------------------
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | PanDA job id: 6895354858
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | task id: 47556149
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | errors: (none)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,888 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:00:30] 2025-11-26 15:59:56,912 | INFO     | pilot state: finished 
[2025-11-26 11:00:30] 2025-11-26 15:59:56,912 | INFO     | transexitcode: 0
[2025-11-26 11:00:30] 2025-11-26 15:59:56,912 | INFO     | exeerrorcode: 0
[2025-11-26 11:00:30] 2025-11-26 15:59:56,912 | INFO     | exeerrordiag: 
[2025-11-26 11:00:30] 2025-11-26 15:59:56,912 | INFO     | exitcode: 0
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | exitmsg: OK
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | cpuconsumptiontime: 292907 s
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | nevents: 1000
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | neventsw: 0
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | pid: 361273
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | pgrp: 361273
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | corecount: 8
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | event service: False
[2025-11-26 11:00:30] 2025-11-26 15:59:56,913 | INFO     | sizes: {0: 2284213, 4: 2284475, 11: 2284503, 67583: 2340977, 67589: 2349971, 67590: 2350027, 67597: 2350401}
[2025-11-26 11:00:30] 2025-11-26 15:59:56,914 | INFO     | --------------------------------------------------
[2025-11-26 11:00:30] 2025-11-26 15:59:56,914 | INFO     | 
[2025-11-26 11:00:30] 2025-11-26 15:59:56,914 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 11:00:30] 2025-11-26 15:59:56,940 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,941 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,941 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,941 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,941 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,941 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,943 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,943 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,943 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,943 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:00:30] 2025-11-26 15:59:56,943 | INFO     | job 6895354858 has completed (purged errors)
[2025-11-26 11:00:30] 2025-11-26 15:59:56,943 | INFO     | overall cleanup function is called
[2025-11-26 11:00:30] 2025-11-26 15:59:57,962 | INFO     | --- collectZombieJob: --- 10, [361273]
[2025-11-26 11:00:30] 2025-11-26 15:59:57,962 | INFO     | zombie collector waiting for pid 361273
[2025-11-26 11:00:30] 2025-11-26 15:59:57,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:00:30] 2025-11-26 15:59:57,962 | INFO     | collected zombie processes
[2025-11-26 11:00:30] 2025-11-26 15:59:57,962 | INFO     | will attempt to kill all subprocesses of pid=361273
[2025-11-26 11:00:30] 2025-11-26 15:59:58,533 | INFO     | process IDs to be killed: [361273] (in reverse order)
[2025-11-26 11:00:30] 2025-11-26 15:59:58,746 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:00:30] 2025-11-26 15:59:58,746 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:00:30] 2025-11-26 15:59:58,784 | INFO     | did not find any defunct processes belonging to 361273
[2025-11-26 11:00:30] 2025-11-26 15:59:58,805 | INFO     | did not find any defunct processes belonging to 361273
[2025-11-26 11:00:30] 2025-11-26 15:59:58,807 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:00:30] 2025-11-26 15:59:58,807 | INFO     | ready for new job
[2025-11-26 11:00:30] 2025-11-26 15:59:58,807 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:00:30] 2025-11-26 15:59:58,812 | INFO     | ***************************************
[2025-11-26 11:00:30] 2025-11-26 15:59:58,812 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:00:30] 2025-11-26 15:59:58,812 | INFO     | ***************************************
[2025-11-26 11:00:30] 2025-11-26 15:59:58,813 | INFO     | 
[2025-11-26 11:00:30] 2025-11-26 15:59:58,814 | INFO     | architecture information:
[2025-11-26 11:00:30] 2025-11-26 15:59:58,815 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:00:30] 2025-11-26 15:59:58,830 | INFO     | cat /etc/os-release:
[2025-11-26 11:00:30] NAME="CentOS Linux"
[2025-11-26 11:00:30] VERSION="7 (Core)"
[2025-11-26 11:00:30] ID="centos"
[2025-11-26 11:00:30] ID_LIKE="rhel fedora"
[2025-11-26 11:00:30] VERSION_ID="7"
[2025-11-26 11:00:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:00:30] ANSI_COLOR="0;31"
[2025-11-26 11:00:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:00:30] HOME_URL="https://www.centos.org/"
[2025-11-26 11:00:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:00:30] 
[2025-11-26 11:00:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:00:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:00:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:00:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:00:30] 
[2025-11-26 11:00:30] 2025-11-26 15:59:58,831 | INFO     | ***************************************
[2025-11-26 11:00:30] 2025-11-26 15:59:59,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 11:00:30] 2025-11-26 15:59:59,351 | INFO     | sufficient remaining disk space (71806484480 B)
[2025-11-26 11:00:30] 2025-11-26 15:59:59,351 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:00:30] 2025-11-26 15:59:59,351 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:00:30] 2025-11-26 15:59:59,352 | INFO     | update_server=False
[2025-11-26 11:00:30] 2025-11-26 15:59:59,352 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:00:30] 2025-11-26 15:59:59,352 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:00:30] 2025-11-26 15:59:59,352 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:00:30] 2025-11-26 15:59:59,423 | INFO     | all job control threads have been joined
[2025-11-26 11:00:30] 2025-11-26 15:59:59,881 | INFO     | all data control threads have been joined
[2025-11-26 11:00:30] 2025-11-26 15:59:59,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:00:30] 2025-11-26 15:59:59,944 | INFO     | aborting loop
[2025-11-26 11:00:30] 2025-11-26 16:00:00,114 | INFO     | all payload control threads have been joined
[2025-11-26 11:00:30] 2025-11-26 16:00:00,357 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:00,429 | INFO     | [job] control thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:00,801 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:00,897 | INFO     | [data] control thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:00,952 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,120 | INFO     | [payload] control thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,307 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,313 | INFO     | [job] validate thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,358 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,424 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,552 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,553 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,596 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:00:30] 2025-11-26 16:00:01,645 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:01,753 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:02,602 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:03,362 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:00:30] 2025-11-26 16:00:03,851 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:00:30] 2025-11-26 16:00:05,154 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140382736529216)>', '<ExcThread(monitor, started 140382364997376)>']
[2025-11-26 11:00:30] 2025-11-26 16:00:10,195 | INFO     | all workflow threads have been joined
[2025-11-26 11:00:30] 2025-11-26 16:00:10,195 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:00:30] 2025-11-26 16:00:10,195 | INFO     | traces error code: 0
[2025-11-26 11:00:30] 2025-11-26 16:00:10,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:00:30] 2025-11-26 16:00:30,277 | INFO     | PID=340742 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 11:00:30] 2025-11-26 16:00:30,278 | INFO     | .. there are 42 such processes running
[2025-11-26 11:00:30] 2025-11-26 16:00:30,278 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:00:30] 2025-11-26 16:00:30,278 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:00:30] 2025-11-26 16:00:30,278 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:00:30] 2025-11-26 16:00:30,278 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:00:30] 2025-11-26 16:00:30,279 | INFO     | [monitor] control thread has ended
[2025-11-26 11:00:30] 2025-11-26 16:00:30,415 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:00:30] 2025-11-26 16:00:30,417 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:00:30] 2025-11-26 16:00:30,419 [wrapper] pilotpid: 340742
[2025-11-26 11:00:30] 2025-11-26 16:00:30,422 [wrapper] Pilot exit status: 0
[2025-11-26 11:00:30] 2025-11-26 16:00:30,461 [wrapper] pandaids: 6895354858 6895354858
[2025-11-26 11:00:30] 2025-11-26 16:00:30,550 [wrapper] cleanup supervisor_pilot   91882 340743
[2025-11-26 11:00:30] 2025-11-26 16:00:30,553 [wrapper] Test setup, not cleaning
[2025-11-26 11:00:30] 2025-11-26 16:00:30,557 [wrapper] apfmon messages muted
[2025-11-26 11:00:30] 2025-11-26 16:00:30,560 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:00:30] 2025-11-26 16:00:30,562 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:00:30]  *** Error codes and diagnostics ***
[2025-11-26 11:00:30]     "exeErrorCode": 0,
[2025-11-26 11:00:30]     "exeErrorDiag": "",
[2025-11-26 11:00:30]     "pilotErrorCode": 0,
[2025-11-26 11:00:30]     "pilotErrorDiag": "",
[2025-11-26 11:00:30]  *** Listing of results directory ***
[2025-11-26 11:00:30] total 1714628
[2025-11-26 11:00:30] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 00:21 pilot3.tar.gz
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 00:42 queuedata.json
[2025-11-26 11:00:30] -rwx------. 1 boincer umatlas     36292 Nov 23 00:43 runpilot2-wrapper.sh
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas       100 Nov 24 20:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:00:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 20:48 run_atlas
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas       105 Nov 24 20:48 job.xml
[2025-11-26 11:00:30] -rw-r--r--. 3 boincer umatlas 410036763 Nov 24 20:48 EVNT.47483658._001142.pool.root.1
[2025-11-26 11:00:30] -rw-r--r--. 3 boincer umatlas 410036763 Nov 24 20:48 ATLAS.root_0
[2025-11-26 11:00:30] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 20:48 input.tar.gz
[2025-11-26 11:00:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:48 start_atlas.sh
[2025-11-26 11:00:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 20:48 shared
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas         0 Nov 24 20:48 boinc_lockfile
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas      2784 Nov 25 16:12 pandaJob.out
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas        57 Nov 25 16:12 setup.sh.local
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas    991893 Nov 25 16:13 agis_schedconf.cvmfs.json
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas       534 Nov 26 10:48 boinc_task_state.xml
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas      6659 Nov 26 10:58 init_data.xml
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas 909925907 Nov 26 10:58 HITS.47556149._001289.pool.root.1
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas        96 Nov 26 10:59 pilot_heartbeat.json
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas      1081 Nov 26 10:59 memory_monitor_summary.json
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 10:59 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas   2230738 Nov 26 10:59 log.47556149._001289.job.log.tgz.1
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas      8644 Nov 26 10:59 heartbeat.json
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 11:00 boinc_mmap_file
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas        30 Nov 26 11:00 wrapper_checkpoint.txt
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas       822 Nov 26 11:00 pilotlog.txt
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas   8695853 Nov 26 11:00 log.47556149._001289.job.log.1
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas       353 Nov 26 11:00 output.list
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 11:00 runtime_log
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas  10946560 Nov 26 11:00 result.tar.gz
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas       786 Nov 26 11:00 XbfKDmZ3Hh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTgKKDmvi4J7m.diag
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas      9413 Nov 26 11:00 runtime_log.err
[2025-11-26 11:00:30] -rw-r--r--. 1 boincer umatlas     23474 Nov 26 11:00 stderr.txt
[2025-11-26 11:00:30] HITS file was successfully produced:
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas 909925907 Nov 26 10:58 shared/HITS.pool.root.1
[2025-11-26 11:00:30]  *** Contents of shared directory: ***
[2025-11-26 11:00:30] total 1300324
[2025-11-26 11:00:30] -rw-r--r--. 3 boincer umatlas 410036763 Nov 24 20:48 ATLAS.root_0
[2025-11-26 11:00:30] -rw-r--r--. 2 boincer umatlas    590101 Nov 24 20:48 input.tar.gz
[2025-11-26 11:00:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:48 start_atlas.sh
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas 909925907 Nov 26 10:58 HITS.pool.root.1
[2025-11-26 11:00:30] -rw-------. 1 boincer umatlas  10946560 Nov 26 11:00 result.tar.gz
11:00:32 (329697): run_atlas exited; CPU time 295281.831872
11:00:32 (329697): called boinc_finish(0)

</stderr_txt>
]]>

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