Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:57 (3736304): wrapper (7.7.26015): starting
00:12:57 (3736304): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 00:12:57] Arguments: --nthreads 8
[2025-11-25 00:12:57] Threads: 8
[2025-11-25 00:12:57] Checking for CVMFS
[2025-11-25 00:12:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:12:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:12:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:12:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:12:58] 2.13.2.0 5664 31899 198816 153271 2 57 30710008 39288832 8481 16776704 0 24120793 99.610 23410337 35461 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:12:58] CVMFS is ok
[2025-11-25 00:12:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:12:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:12:58] Further information can be found at the LHC@home message board.
[2025-11-25 00:12:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:12:58] Checking for apptainer binary...
[2025-11-25 00:12:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:12:58] Running /usr/bin/apptainer --version
[2025-11-25 00:12:59] apptainer version 1.4.4-1.el9
[2025-11-25 00:12:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:12:59] c-210-30.aglt2.org
[2025-11-25 00:12:59] apptainer works
[2025-11-25 00:12:59] Set ATHENA_PROC_NUMBER=8
[2025-11-25 00:12:59] Set ATHENA_CORE_NUMBER=8
[2025-11-25 00:13:00] Starting ATLAS job with PandaID=6895380014
[2025-11-25 00:13:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:12:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:12:30] 2025-11-27 01:11:16,681 | INFO     | 158219s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-26 20:12:30] 2025-11-27 01:11:18,687 | INFO     | time since job start (158213s) is within the limit (172800.0s)
[2025-11-26 20:12:30] 2025-11-27 01:11:18,996 | INFO     | monitor loop #9721: job 0:6895380014 is in state 'finished'
[2025-11-26 20:12:30] 2025-11-27 01:11:19,002 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:12:30] 2025-11-27 01:11:20,697 | INFO     | time since job start (158215s) is within the limit (172800.0s)
[2025-11-26 20:12:30] 2025-11-27 01:11:21,532 | INFO     | monitor loop #9722: job 0:6895380014 is in state 'finished'
[2025-11-26 20:12:30] 2025-11-27 01:11:21,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:12:30] 2025-11-27 01:11:22,766 | INFO     | time since job start (158217s) is within the limit (172800.0s)
[2025-11-26 20:12:30] 2025-11-27 01:11:24,056 | INFO     | monitor loop #9723: job 0:6895380014 is in state 'finished'
[2025-11-26 20:12:30] 2025-11-27 01:11:24,063 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:12:30] 2025-11-27 01:11:24,650 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:12:30] 2025-11-27 01:11:24,667 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.851
[2025-11-26 20:12:30] 2025-11-27 01:11:24,787 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6895380014/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:12:30] 2025-11-27 01:11:24,788 | INFO     | extracted standard info from prmon json
[2025-11-26 20:12:30] 2025-11-27 01:11:24,788 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:12:30] 2025-11-27 01:11:24,788 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:12:30] 2025-11-27 01:11:24,895 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:12:30] 2025-11-27 01:11:24,909 | INFO     | time since job start (158219s) is within the limit (172800.0s)
[2025-11-26 20:12:30] 2025-11-27 01:11:24,910 | INFO     | sum of square deviations: 5387128543359.874
[2025-11-26 20:12:30] 2025-11-27 01:11:25,792 | INFO     | sum of deviations: 10697711485713.004
[2025-11-26 20:12:30] 2025-11-27 01:11:25,792 | INFO     | mean x: 1764126818.3930502
[2025-11-26 20:12:30] 2025-11-27 01:11:25,793 | INFO     | mean y: 2907159.323166023
[2025-11-26 20:12:30] 2025-11-27 01:11:25,793 | INFO     | intersect: -3500280035.0197787
[2025-11-26 20:12:30] 2025-11-27 01:11:25,800 | INFO     | chi2: 32.98630869623104
[2025-11-26 20:12:30] 2025-11-27 01:11:25,808 | INFO     | sum of square deviations: 5355990764951.457
[2025-11-26 20:12:30] 2025-11-27 01:11:26,131 | INFO     | sum of deviations: 11758896776955.547
[2025-11-26 20:12:30] 2025-11-27 01:11:26,132 | INFO     | mean x: 1764126665.9005802
[2025-11-26 20:12:30] 2025-11-27 01:11:26,132 | INFO     | mean y: 2912356.321083172
[2025-11-26 20:12:30] 2025-11-27 01:11:26,132 | INFO     | intersect: -3870168139.1766863
[2025-11-26 20:12:30] 2025-11-27 01:11:26,139 | INFO     | chi2: 28.414997336978423
[2025-11-26 20:12:30] 2025-11-27 01:11:26,140 | INFO     | current chi2=28.414997336978423 (change=13.858208268616998 %)
[2025-11-26 20:12:30] 2025-11-27 01:11:26,140 | INFO     | right removable region: 2584
[2025-11-26 20:12:30] 2025-11-27 01:11:26,148 | INFO     | sum of square deviations: 5355984614321.447
[2025-11-26 20:12:30] 2025-11-27 01:11:26,474 | INFO     | sum of deviations: 9630647452868.564
[2025-11-26 20:12:30] 2025-11-27 01:11:26,474 | INFO     | mean x: 1764126970.9005802
[2025-11-26 20:12:30] 2025-11-27 01:11:26,474 | INFO     | mean y: 2912384.1849129596
[2025-11-26 20:12:30] 2025-11-27 01:11:26,475 | INFO     | intersect: -3169181290.881187
[2025-11-26 20:12:30] 2025-11-27 01:11:26,482 | INFO     | chi2: 28.749089132519458
[2025-11-26 20:12:30] 2025-11-27 01:11:26,483 | INFO     | current chi2=28.749089132519458 (change=12.845388681503852 %)
[2025-11-26 20:12:30] 2025-11-27 01:11:26,483 | INFO     | left removable region: 10
[2025-11-26 20:12:30] 2025-11-27 01:11:26,491 | INFO     | sum of square deviations: 5287898250283.869
[2025-11-26 20:12:30] 2025-11-27 01:11:26,919 | INFO     | monitor loop #9724: job 0:6895380014 is in state 'finished'
[2025-11-26 20:12:30] 2025-11-27 01:11:26,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:12:30] 2025-11-27 01:11:26,921 | INFO     | time since job start (158221s) is within the limit (172800.0s)
[2025-11-26 20:12:30] 2025-11-27 01:11:27,885 | INFO     | sum of deviations: 10021142769152.729
[2025-11-26 20:12:30] 2025-11-27 01:11:27,940 | INFO     | mean x: 1764126940.4172494
[2025-11-26 20:12:30] 2025-11-27 01:11:27,940 | INFO     | mean y: 2923012.7404817403
[2025-11-26 20:12:30] 2025-11-27 01:11:27,940 | INFO     | intersect: -3340289563.613613
[2025-11-26 20:12:30] 2025-11-27 01:11:28,006 | INFO     | chi2: 20.426547255823767
[2025-11-26 20:12:30] 2025-11-27 01:11:28,007 | INFO     | current memory leak: 1.90 B/s (using 2574 data points, chi2=20.43)
[2025-11-26 20:12:30] 2025-11-27 01:11:28,027 | INFO     | could have reported an average CPU frequency of 2599 MHz (89 samples)
[2025-11-26 20:12:30] 2025-11-27 01:11:28,028 | INFO     | ..............................
[2025-11-26 20:12:30] 2025-11-27 01:11:28,028 | INFO     | . Timing measurements:
[2025-11-26 20:12:30] 2025-11-27 01:11:28,028 | INFO     | . get job = 0 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,028 | INFO     | . initial setup = 7 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,028 | INFO     | . payload setup = 58 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,029 | INFO     | . stage-in = 0 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,029 | INFO     | . payload execution = 158007 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,029 | INFO     | . stage-out = 22 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,029 | INFO     | . log creation = 5 s
[2025-11-26 20:12:30] 2025-11-27 01:11:28,029 | INFO     | ..............................
[2025-11-26 20:12:30] 2025-11-27 01:11:29,052 | INFO     | time since job start (158224s) is within the limit (172800.0s)
[2025-11-26 20:12:30] 2025-11-27 01:11:29,188 | INFO     | 
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | job summary report
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | --------------------------------------------------
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | PanDA job id: 6895380014
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | task id: 47556137
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | errors: (none)
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | pilot state: finished 
[2025-11-26 20:12:30] 2025-11-27 01:11:29,192 | INFO     | transexitcode: 0
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | exeerrorcode: 0
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | exeerrordiag: 
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | exitcode: 0
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | exitmsg: OK
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | cpuconsumptiontime: 303453 s
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | nevents: 1000
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | neventsw: 0
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | pid: 3754150
[2025-11-26 20:12:30] 2025-11-27 01:11:29,193 | INFO     | pgrp: 3754150
[2025-11-26 20:12:30] 2025-11-27 01:11:29,194 | INFO     | corecount: 8
[2025-11-26 20:12:30] 2025-11-27 01:11:29,194 | INFO     | event service: False
[2025-11-26 20:12:30] 2025-11-27 01:11:29,194 | INFO     | sizes: {0: 2283482, 1: 2284167, 2: 2284366, 14: 2284366, 26: 2284394, 37: 2284812, 48: 2284840, 158067: 2383547, 158069: 2383546, 158093: 2392601, 158097: 2392657,
[2025-11-26 20:12:30] 2025-11-27 01:11:29,194 | INFO     | --------------------------------------------------
[2025-11-26 20:12:30] 2025-11-27 01:11:29,194 | INFO     | 
[2025-11-26 20:12:30] 2025-11-27 01:11:29,194 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 20:12:30] 2025-11-27 01:11:29,495 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,495 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,495 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,495 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,496 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,497 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:12:30] 2025-11-27 01:11:29,498 | INFO     | job 6895380014 has completed (purged errors)
[2025-11-26 20:12:30] 2025-11-27 01:11:29,498 | INFO     | overall cleanup function is called
[2025-11-26 20:12:30] 2025-11-27 01:11:30,841 | INFO     | --- collectZombieJob: --- 10, [3754150]
[2025-11-26 20:12:30] 2025-11-27 01:11:30,842 | INFO     | zombie collector waiting for pid 3754150
[2025-11-26 20:12:30] 2025-11-27 01:11:30,842 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:12:30] 2025-11-27 01:11:30,842 | INFO     | collected zombie processes
[2025-11-26 20:12:30] 2025-11-27 01:11:30,842 | INFO     | will attempt to kill all subprocesses of pid=3754150
[2025-11-26 20:12:30] 2025-11-27 01:11:35,983 | INFO     | PID=3740835 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:12:30] 2025-11-27 01:11:35,984 | INFO     | .. there are 8 such processes running
[2025-11-26 20:12:30] 2025-11-27 01:11:36,304 | INFO     | process IDs to be killed: [3754150] (in reverse order)
[2025-11-26 20:12:30] 2025-11-27 01:11:37,288 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:12:30] 2025-11-27 01:11:37,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:12:30] 2025-11-27 01:11:37,441 | INFO     | did not find any defunct processes belonging to 3754150
[2025-11-26 20:12:30] 2025-11-27 01:11:37,601 | INFO     | did not find any defunct processes belonging to 3754150
[2025-11-26 20:12:30] 2025-11-27 01:11:37,653 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:12:30] 2025-11-27 01:11:37,653 | INFO     | ready for new job
[2025-11-26 20:12:30] 2025-11-27 01:11:37,653 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:12:30] 2025-11-27 01:11:37,754 | INFO     | ***************************************
[2025-11-26 20:12:30] 2025-11-27 01:11:37,798 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:12:30] 2025-11-27 01:11:37,798 | INFO     | ***************************************
[2025-11-26 20:12:30] 2025-11-27 01:11:37,798 | INFO     | 
[2025-11-26 20:12:30] 2025-11-27 01:11:37,800 | INFO     | architecture information:
[2025-11-26 20:12:30] 2025-11-27 01:11:37,844 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:12:30] 2025-11-27 01:11:38,155 | INFO     | cat /etc/os-release:
[2025-11-26 20:12:30] NAME="CentOS Linux"
[2025-11-26 20:12:30] VERSION="7 (Core)"
[2025-11-26 20:12:30] ID="centos"
[2025-11-26 20:12:30] ID_LIKE="rhel fedora"
[2025-11-26 20:12:30] VERSION_ID="7"
[2025-11-26 20:12:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:12:30] ANSI_COLOR="0;31"
[2025-11-26 20:12:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:12:30] HOME_URL="https://www.centos.org/"
[2025-11-26 20:12:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:12:30] 
[2025-11-26 20:12:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:12:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:12:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:12:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:12:30] 
[2025-11-26 20:12:30] 2025-11-27 01:11:38,155 | INFO     | ***************************************
[2025-11-26 20:12:30] 2025-11-27 01:11:38,659 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 20:12:30] 2025-11-27 01:11:38,842 | INFO     | sufficient remaining disk space (49749688320 B)
[2025-11-26 20:12:30] 2025-11-27 01:11:38,842 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:12:30] 2025-11-27 01:11:38,843 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:12:30] 2025-11-27 01:11:38,843 | INFO     | update_server=False
[2025-11-26 20:12:30] 2025-11-27 01:11:38,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:12:30] 2025-11-27 01:11:38,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:12:30] 2025-11-27 01:11:38,843 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:12:30] 2025-11-27 01:11:38,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:12:30] 2025-11-27 01:11:38,844 | INFO     | aborting loop
[2025-11-26 20:12:30] 2025-11-27 01:11:39,135 | INFO     | all data control threads have been joined
[2025-11-26 20:12:30] 2025-11-27 01:11:39,145 | INFO     | all job control threads have been joined
[2025-11-26 20:12:30] 2025-11-27 01:11:39,848 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:39,848 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:39,849 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,105 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,134 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,140 | INFO     | [data] control thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,151 | INFO     | [job] control thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,218 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:12:30] 2025-11-27 01:11:40,381 | INFO     | all payload control threads have been joined
[2025-11-26 20:12:30] 2025-11-27 01:11:40,603 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,623 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,634 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,740 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,741 | INFO     | [job] validate thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:40,741 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:41,393 | INFO     | [payload] control thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:42,225 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:11:42,855 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:12:30] 2025-11-27 01:12:11,652 | INFO     | PID=3740835 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:12:30] 2025-11-27 01:12:11,652 | INFO     | .. there are 8 such processes running
[2025-11-26 20:12:30] 2025-11-27 01:12:11,660 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:12:30] 2025-11-27 01:12:11,661 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:12:30] 2025-11-27 01:12:11,661 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:12:30] 2025-11-27 01:12:18,498 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:12:30] 2025-11-27 01:12:19,517 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781006137152)>', '<ExcThread(monitor, started 139780356556544)>']
[2025-11-26 20:12:30] 2025-11-27 01:12:19,761 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:12:30] 2025-11-27 01:12:19,762 | INFO     | [monitor] control thread has ended
[2025-11-26 20:12:30] 2025-11-27 01:12:24,574 | INFO     | all workflow threads have been joined
[2025-11-26 20:12:30] 2025-11-27 01:12:24,575 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:12:30] 2025-11-27 01:12:24,575 | INFO     | traces error code: 0
[2025-11-26 20:12:30] 2025-11-27 01:12:24,575 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:12:30] 2025-11-27 01:12:28,874 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:12:30] 2025-11-27 01:12:28,915 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:12:30] 2025-11-27 01:12:28,945 [wrapper] pilotpid: 3740835
[2025-11-26 20:12:30] 2025-11-27 01:12:28,990 [wrapper] Pilot exit status: 0
[2025-11-26 20:12:30] 2025-11-27 01:12:29,087 [wrapper] pandaids: 6895380014
[2025-11-26 20:12:30] 2025-11-27 01:12:29,226 [wrapper] cleanup supervisor_pilot   20915 3740836
[2025-11-26 20:12:30] 2025-11-27 01:12:29,230 [wrapper] Test setup, not cleaning
[2025-11-26 20:12:30] 2025-11-27 01:12:29,264 [wrapper] apfmon messages muted
[2025-11-26 20:12:30] 2025-11-27 01:12:29,315 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:12:30] 2025-11-27 01:12:29,337 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:12:30]  *** Error codes and diagnostics ***
[2025-11-26 20:12:30]     "exeErrorCode": 0,
[2025-11-26 20:12:30]     "exeErrorDiag": "",
[2025-11-26 20:12:30]     "pilotErrorCode": 0,
[2025-11-26 20:12:30]     "pilotErrorDiag": "",
[2025-11-26 20:12:30]  *** Listing of results directory ***
[2025-11-26 20:12:30] total 1352052
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 21:30 pilot3.tar.gz
[2025-11-26 20:12:30] -rwx------. 1 boincer umatlas     36292 Nov 23 21:41 runpilot2-wrapper.sh
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 21:41 queuedata.json
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:12:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:12 run_atlas
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:12 job.xml
[2025-11-26 20:12:30] -rw-r--r--. 2 boincer umatlas 412448763 Nov 25 00:12 EVNT.47483658._000984.pool.root.1
[2025-11-26 20:12:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:12 start_atlas.sh
[2025-11-26 20:12:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:12 shared
[2025-11-26 20:12:30] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:12 input.tar.gz
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:12 boinc_lockfile
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 00:12 pandaJob.out
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas        57 Nov 25 00:13 setup.sh.local
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas    991801 Nov 25 00:14 agis_schedconf.cvmfs.json
[2025-11-26 20:12:30] drwx------. 5 boincer umatlas      4096 Nov 25 00:14 pilot3
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas       534 Nov 26 19:19 boinc_task_state.xml
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas 920919263 Nov 26 20:03 HITS.47556137._009707.pool.root.1
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas      1069 Nov 26 20:10 memory_monitor_summary.json
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:10 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas   3326803 Nov 26 20:10 log.47556137._009707.job.log.tgz.1
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas      8665 Nov 26 20:11 heartbeat.json
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas      6664 Nov 26 20:11 init_data.xml
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas        95 Nov 26 20:12 pilot_heartbeat.json
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas      4823 Nov 26 20:12 pilotlog.txt
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas  20278492 Nov 26 20:12 log.47556137._009707.job.log.1
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:12 boinc_mmap_file
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas        30 Nov 26 20:12 wrapper_checkpoint.txt
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas       353 Nov 26 20:12 output.list
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:12 runtime_log
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas  23623680 Nov 26 20:12 result.tar.gz
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas      9344 Nov 26 20:12 runtime_log.err
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas       668 Nov 26 20:12 nKxLDmwgbh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzsIKDmTgXjkn.diag
[2025-11-26 20:12:30] -rw-r--r--. 1 boincer umatlas     21896 Nov 26 20:12 stderr.txt
[2025-11-26 20:12:30] HITS file was successfully produced:
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas 920919263 Nov 26 20:03 shared/HITS.pool.root.1
[2025-11-26 20:12:30]  *** Contents of shared directory: ***
[2025-11-26 20:12:30] total 1325796
[2025-11-26 20:12:30] -rw-r--r--. 2 boincer umatlas 412448763 Nov 25 00:12 ATLAS.root_0
[2025-11-26 20:12:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:12 start_atlas.sh
[2025-11-26 20:12:30] -rw-r--r--. 2 boincer umatlas    590100 Nov 25 00:12 input.tar.gz
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas 920919263 Nov 26 20:03 HITS.pool.root.1
[2025-11-26 20:12:30] -rw-------. 1 boincer umatlas  23623680 Nov 26 20:12 result.tar.gz
20:12:32 (3736304): run_atlas exited; CPU time 306117.609260
20:12:32 (3736304): called boinc_finish(0)

</stderr_txt>
]]>

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