Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:26:01 (1383376): wrapper (7.7.26015): starting
20:26:01 (1383376): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 20:26:01] Arguments: --nthreads 8
[2025-11-24 20:26:01] Threads: 8
[2025-11-24 20:26:01] Checking for CVMFS
[2025-11-24 20:26:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:26:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:26:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:26:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:26:03] 2.13.3.0 10121 27900 411400 153265 2 117 26931064 32935936 56003 16776704 0 316847805 99.784 165052603 27495 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 20:26:03] CVMFS is ok
[2025-11-24 20:26:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:26:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:26:03] Further information can be found at the LHC@home message board.
[2025-11-24 20:26:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:26:03] Checking for apptainer binary...
[2025-11-24 20:26:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:26:03] Running /usr/bin/apptainer --version
[2025-11-24 20:26:03] apptainer version 1.4.4-1.el9
[2025-11-24 20:26:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:26:04] lc-10-11.aglt2.org
[2025-11-24 20:26:04] apptainer works
[2025-11-24 20:26:04] Set ATHENA_PROC_NUMBER=8
[2025-11-24 20:26:04] Set ATHENA_CORE_NUMBER=8
[2025-11-24 20:26:04] Starting ATLAS job with PandaID=6895364218
[2025-11-24 20:26:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:20:51]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:20:51] 2025-11-26 01:19:51,216 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:20:51] 2025-11-26 01:19:53,750 | INFO     | monitor loop #4730: job 0:6895364218 is in state 'finished'
[2025-11-25 20:20:51] 2025-11-26 01:19:53,751 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:20:51] 2025-11-26 01:19:54,859 | INFO     | PID=1388996 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:20:51] 2025-11-26 01:19:54,860 | INFO     | .. there are 79 such processes running
[2025-11-25 20:20:51] 2025-11-26 01:19:55,860 | INFO     | time since job start (85967s) is within the limit (172800.0s)
[2025-11-25 20:20:51] 2025-11-26 01:19:55,861 | INFO     | 85972s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-25 20:20:51] 2025-11-26 01:19:56,283 | INFO     | monitor loop #4731: job 0:6895364218 is in state 'finished'
[2025-11-25 20:20:51] 2025-11-26 01:19:56,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:20:51] 2025-11-26 01:19:57,867 | INFO     | time since job start (85969s) is within the limit (172800.0s)
[2025-11-25 20:20:51] 2025-11-26 01:19:58,791 | INFO     | monitor loop #4732: job 0:6895364218 is in state 'finished'
[2025-11-25 20:20:51] 2025-11-26 01:19:58,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:20:51] 2025-11-26 01:19:59,877 | INFO     | time since job start (85971s) is within the limit (172800.0s)
[2025-11-25 20:20:51] 2025-11-26 01:20:01,313 | INFO     | monitor loop #4733: job 0:6895364218 is in state 'finished'
[2025-11-25 20:20:51] 2025-11-26 01:20:01,314 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 20:20:51] 2025-11-26 01:20:01,896 | INFO     | time since job start (85973s) is within the limit (172800.0s)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,393 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 20:20:51] 2025-11-26 01:20:03,403 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2666.546781249999
[2025-11-25 20:20:51] 2025-11-26 01:20:03,441 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895364218/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,442 | INFO     | extracted standard info from prmon json
[2025-11-25 20:20:51] 2025-11-26 01:20:03,442 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:20:51] 2025-11-26 01:20:03,442 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:20:51] 2025-11-26 01:20:03,521 | INFO     | fitting pss+swap vs Time
[2025-11-25 20:20:51] 2025-11-26 01:20:03,523 | INFO     | sum of square deviations: 863674263211.5378
[2025-11-25 20:20:51] 2025-11-26 01:20:03,591 | INFO     | sum of deviations: 3459938583985.494
[2025-11-25 20:20:51] 2025-11-26 01:20:03,591 | INFO     | mean x: 1764077051.5664535
[2025-11-25 20:20:51] 2025-11-26 01:20:03,591 | INFO     | mean y: 2894482.6417910447
[2025-11-25 20:20:51] 2025-11-26 01:20:03,591 | INFO     | intersect: -7064119686.730533
[2025-11-25 20:20:51] 2025-11-26 01:20:03,596 | INFO     | chi2: 16.308222368104126
[2025-11-25 20:20:51] 2025-11-26 01:20:03,598 | INFO     | sum of square deviations: 854499777341.7238
[2025-11-25 20:20:51] 2025-11-26 01:20:03,647 | INFO     | sum of deviations: 3945916245010.858
[2025-11-25 20:20:51] 2025-11-26 01:20:03,647 | INFO     | mean x: 1764076899.0720398
[2025-11-25 20:20:51] 2025-11-26 01:20:03,648 | INFO     | mean y: 2902559.32810271
[2025-11-25 20:20:51] 2025-11-26 01:20:03,648 | INFO     | intersect: -8143266553.964717
[2025-11-25 20:20:51] 2025-11-26 01:20:03,649 | INFO     | chi2: 12.99538824084472
[2025-11-25 20:20:51] 2025-11-26 01:20:03,650 | INFO     | current chi2=12.99538824084472 (change=20.31388861693901 %)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,650 | INFO     | right removable region: 1401
[2025-11-25 20:20:51] 2025-11-26 01:20:03,651 | INFO     | sum of square deviations: 854498432901.7233
[2025-11-25 20:20:51] 2025-11-26 01:20:03,739 | INFO     | sum of deviations: 2908775522566.853
[2025-11-25 20:20:51] 2025-11-26 01:20:03,739 | INFO     | mean x: 1764077204.0720398
[2025-11-25 20:20:51] 2025-11-26 01:20:03,739 | INFO     | mean y: 2903642.169757489
[2025-11-25 20:20:51] 2025-11-26 01:20:03,739 | INFO     | intersect: -6002144926.144091
[2025-11-25 20:20:51] 2025-11-26 01:20:03,741 | INFO     | chi2: 12.405197748893578
[2025-11-25 20:20:51] 2025-11-26 01:20:03,741 | INFO     | current chi2=12.405197748893578 (change=23.932863626167766 %)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,742 | INFO     | left removable region: 10
[2025-11-25 20:20:51] 2025-11-26 01:20:03,743 | INFO     | sum of square deviations: 834542433147.825
[2025-11-25 20:20:51] 2025-11-26 01:20:03,785 | INFO     | sum of deviations: 3076413428002.45
[2025-11-25 20:20:51] 2025-11-26 01:20:03,785 | INFO     | mean x: 1764077173.5844717
[2025-11-25 20:20:51] 2025-11-26 01:20:03,785 | INFO     | mean y: 2920748.872753415
[2025-11-25 20:20:51] 2025-11-26 01:20:03,785 | INFO     | intersect: -6500080763.438092
[2025-11-25 20:20:51] 2025-11-26 01:20:03,787 | INFO     | chi2: 6.020256457160133
[2025-11-25 20:20:51] 2025-11-26 01:20:03,787 | INFO     | current memory leak: 3.69 B/s (using 1391 data points, chi2=6.02)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,789 | INFO     | could have reported an average CPU frequency of 2669 MHz (50 samples)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | ..............................
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . Timing measurements:
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . get job = 0 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . initial setup = 4 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . payload setup = 43 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . stage-in = 0 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . payload execution = 85821 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . stage-out = 7 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | . log creation = 2 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,790 | INFO     | ..............................
[2025-11-25 20:20:51] 2025-11-26 01:20:03,891 | INFO     | 
[2025-11-25 20:20:51] 2025-11-26 01:20:03,891 | INFO     | job summary report
[2025-11-25 20:20:51] 2025-11-26 01:20:03,891 | INFO     | --------------------------------------------------
[2025-11-25 20:20:51] 2025-11-26 01:20:03,891 | INFO     | PanDA job id: 6895364218
[2025-11-25 20:20:51] 2025-11-26 01:20:03,891 | INFO     | task id: 47556137
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | errors: (none)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | pilot state: finished 
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | transexitcode: 0
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | exeerrorcode: 0
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | exeerrordiag: 
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | exitcode: 0
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | exitmsg: OK
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | cpuconsumptiontime: 274261 s
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | nevents: 1000
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | neventsw: 0
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | pid: 1397798
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | pgrp: 1397798
[2025-11-25 20:20:51] 2025-11-26 01:20:03,892 | INFO     | corecount: 8
[2025-11-25 20:20:51] 2025-11-26 01:20:03,893 | INFO     | event service: False
[2025-11-25 20:20:51] 2025-11-26 01:20:03,893 | INFO     | sizes: {0: 2283475, 1: 2284160, 2: 2284188, 3: 2284359, 4: 2284415, 15: 2284415, 26: 2284571, 31: 2284861, 37: 2284889, 85869: 2348941, 85870: 2348940, 85878: 2358
[2025-11-25 20:20:51] 2025-11-26 01:20:03,893 | INFO     | --------------------------------------------------
[2025-11-25 20:20:51] 2025-11-26 01:20:03,893 | INFO     | 
[2025-11-25 20:20:51] 2025-11-26 01:20:03,893 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-25 20:20:51] 2025-11-26 01:20:03,917 | INFO     | time since job start (85975s) is within the limit (172800.0s)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,917 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,917 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,918 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:20:51] 2025-11-26 01:20:03,919 | INFO     | job 6895364218 has completed (purged errors)
[2025-11-25 20:20:51] 2025-11-26 01:20:03,920 | INFO     | overall cleanup function is called
[2025-11-25 20:20:51] 2025-11-26 01:20:04,962 | INFO     | --- collectZombieJob: --- 10, [1397798]
[2025-11-25 20:20:51] 2025-11-26 01:20:04,962 | INFO     | zombie collector waiting for pid 1397798
[2025-11-25 20:20:51] 2025-11-26 01:20:04,962 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:20:51] 2025-11-26 01:20:04,962 | INFO     | collected zombie processes
[2025-11-25 20:20:51] 2025-11-26 01:20:04,962 | INFO     | will attempt to kill all subprocesses of pid=1397798
[2025-11-25 20:20:51] 2025-11-26 01:20:06,555 | INFO     | process IDs to be killed: [1397798] (in reverse order)
[2025-11-25 20:20:51] 2025-11-26 01:20:07,181 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:20:51] 2025-11-26 01:20:07,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:20:51] 2025-11-26 01:20:07,213 | INFO     | did not find any defunct processes belonging to 1397798
[2025-11-25 20:20:51] 2025-11-26 01:20:07,254 | INFO     | did not find any defunct processes belonging to 1397798
[2025-11-25 20:20:51] 2025-11-26 01:20:07,283 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:20:51] 2025-11-26 01:20:07,283 | INFO     | ready for new job
[2025-11-25 20:20:51] 2025-11-26 01:20:07,283 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:20:51] 2025-11-26 01:20:07,306 | INFO     | ***************************************
[2025-11-25 20:20:51] 2025-11-26 01:20:07,307 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:20:51] 2025-11-26 01:20:07,307 | INFO     | ***************************************
[2025-11-25 20:20:51] 2025-11-26 01:20:07,307 | INFO     | 
[2025-11-25 20:20:51] 2025-11-26 01:20:07,320 | INFO     | architecture information:
[2025-11-25 20:20:51] 2025-11-26 01:20:07,330 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:20:51] 2025-11-26 01:20:07,415 | INFO     | cat /etc/os-release:
[2025-11-25 20:20:51] NAME="CentOS Linux"
[2025-11-25 20:20:51] VERSION="7 (Core)"
[2025-11-25 20:20:51] ID="centos"
[2025-11-25 20:20:51] ID_LIKE="rhel fedora"
[2025-11-25 20:20:51] VERSION_ID="7"
[2025-11-25 20:20:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:20:51] ANSI_COLOR="0;31"
[2025-11-25 20:20:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:20:51] HOME_URL="https://www.centos.org/"
[2025-11-25 20:20:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:20:51] 
[2025-11-25 20:20:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:20:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:20:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:20:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:20:51] 
[2025-11-25 20:20:51] 2025-11-26 01:20:07,416 | INFO     | ***************************************
[2025-11-25 20:20:51] 2025-11-26 01:20:07,920 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-25 20:20:51] 2025-11-26 01:20:08,006 | INFO     | sufficient remaining disk space (87090528256 B)
[2025-11-25 20:20:51] 2025-11-26 01:20:08,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:20:51] 2025-11-26 01:20:08,006 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:20:51] 2025-11-26 01:20:08,007 | INFO     | update_server=False
[2025-11-25 20:20:51] 2025-11-26 01:20:08,007 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:20:51] 2025-11-26 01:20:08,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:20:51] 2025-11-26 01:20:08,007 | INFO     | aborting loop
[2025-11-25 20:20:51] 2025-11-26 01:20:08,007 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:20:51] 2025-11-26 01:20:08,656 | INFO     | all data control threads have been joined
[2025-11-25 20:20:51] 2025-11-26 01:20:08,669 | INFO     | all payload control threads have been joined
[2025-11-25 20:20:51] 2025-11-26 01:20:08,940 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:20:51] 2025-11-26 01:20:09,021 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,021 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,073 | INFO     | all job control threads have been joined
[2025-11-25 20:20:51] 2025-11-26 01:20:09,375 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,668 | INFO     | [data] control thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,676 | INFO     | [payload] control thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,791 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,897 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:09,946 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:10,025 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:10,051 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:20:51] 2025-11-26 01:20:10,082 | INFO     | [job] control thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:10,105 | INFO     | [job] validate thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:10,122 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:10,313 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:10,624 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:14,069 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:20:51] 2025-11-26 01:20:38,385 | INFO     | PID=1388996 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 20:20:51] 2025-11-26 01:20:38,385 | INFO     | .. there are 79 such processes running
[2025-11-25 20:20:51] 2025-11-26 01:20:38,386 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:20:51] 2025-11-26 01:20:38,386 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:20:51] 2025-11-26 01:20:38,386 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:20:51] 2025-11-26 01:20:44,067 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:20:51] 2025-11-26 01:20:44,272 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140461104744256)>', '<ExcThread(monitor, started 140460387460864)>']
[2025-11-25 20:20:51] 2025-11-26 01:20:44,430 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:20:51] 2025-11-26 01:20:44,430 | INFO     | [monitor] control thread has ended
[2025-11-25 20:20:51] 2025-11-26 01:20:49,300 | INFO     | all workflow threads have been joined
[2025-11-25 20:20:51] 2025-11-26 01:20:49,300 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:20:51] 2025-11-26 01:20:49,301 | INFO     | traces error code: 0
[2025-11-25 20:20:51] 2025-11-26 01:20:49,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:20:51] 2025-11-26 01:20:50,324 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:20:51] 2025-11-26 01:20:50,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:20:51] 2025-11-26 01:20:50,396 [wrapper] pilotpid: 1388996
[2025-11-25 20:20:51] 2025-11-26 01:20:50,416 [wrapper] Pilot exit status: 0
[2025-11-25 20:20:51] 2025-11-26 01:20:50,480 [wrapper] pandaids: 6895364218
[2025-11-25 20:20:51] 2025-11-26 01:20:50,732 [wrapper] cleanup supervisor_pilot  870922 1388997
[2025-11-25 20:20:51] 2025-11-26 01:20:50,736 [wrapper] Test setup, not cleaning
[2025-11-25 20:20:51] 2025-11-26 01:20:50,749 [wrapper] apfmon messages muted
[2025-11-25 20:20:51] 2025-11-26 01:20:50,762 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:20:51] 2025-11-26 01:20:50,799 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:20:51]  *** Error codes and diagnostics ***
[2025-11-25 20:20:51]     "exeErrorCode": 0,
[2025-11-25 20:20:51]     "exeErrorDiag": "",
[2025-11-25 20:20:51]     "pilotErrorCode": 0,
[2025-11-25 20:20:51]     "pilotErrorDiag": "",
[2025-11-25 20:20:51]  *** Listing of results directory ***
[2025-11-25 20:20:51] total 1328544
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 10:18 pilot3.tar.gz
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 10:41 queuedata.json
[2025-11-25 20:20:51] -rwx------. 1 boincer umatlas     36292 Nov 23 10:42 runpilot2-wrapper.sh
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas       100 Nov 24 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:20:51] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 20:26 run_atlas
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas       105 Nov 24 20:26 job.xml
[2025-11-25 20:20:51] -rw-r--r--. 2 boincer umatlas 411529790 Nov 24 20:26 EVNT.47483658._000802.pool.root.1
[2025-11-25 20:20:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:26 start_atlas.sh
[2025-11-25 20:20:51] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 20:26 shared
[2025-11-25 20:20:51] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 20:26 input.tar.gz
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas         0 Nov 24 20:26 boinc_lockfile
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas      2782 Nov 24 20:26 pandaJob.out
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas        57 Nov 24 20:26 setup.sh.local
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas    991801 Nov 24 20:27 agis_schedconf.cvmfs.json
[2025-11-25 20:20:51] drwx------. 5 boincer umatlas      4096 Nov 24 20:27 pilot3
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas       533 Nov 25 19:53 boinc_task_state.xml
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas 919541482 Nov 25 20:18 HITS.47556137._007881.pool.root.1
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas      6887 Nov 25 20:18 init_data.xml
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas      1059 Nov 25 20:19 memory_monitor_summary.json
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas   1516240 Nov 25 20:19 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas   2405384 Nov 25 20:19 log.47556137._007881.job.log.tgz.1
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas      8625 Nov 25 20:20 heartbeat.json
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas        95 Nov 25 20:20 pilot_heartbeat.json
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas      4824 Nov 25 20:20 pilotlog.txt
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 20:20 boinc_mmap_file
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas        29 Nov 25 20:20 wrapper_checkpoint.txt
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas  10308867 Nov 25 20:20 log.47556137._007881.job.log.1
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas       353 Nov 25 20:20 output.list
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas       620 Nov 25 20:20 runtime_log
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas  12738560 Nov 25 20:20 result.tar.gz
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas      9343 Nov 25 20:20 runtime_log.err
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas       660 Nov 25 20:20 8aIODmPPRh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmkcIKDmkWGUEm.diag
[2025-11-25 20:20:51] -rw-r--r--. 1 boincer umatlas     21908 Nov 25 20:20 stderr.txt
[2025-11-25 20:20:51] HITS file was successfully produced:
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas 919541482 Nov 25 20:18 shared/HITS.pool.root.1
[2025-11-25 20:20:51]  *** Contents of shared directory: ***
[2025-11-25 20:20:51] total 1312924
[2025-11-25 20:20:51] -rw-r--r--. 2 boincer umatlas 411529790 Nov 24 20:26 ATLAS.root_0
[2025-11-25 20:20:51] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:26 start_atlas.sh
[2025-11-25 20:20:51] -rw-r--r--. 2 boincer umatlas    590105 Nov 24 20:26 input.tar.gz
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas 919541482 Nov 25 20:18 HITS.pool.root.1
[2025-11-25 20:20:51] -rw-------. 1 boincer umatlas  12738560 Nov 25 20:20 result.tar.gz
20:20:52 (1383376): run_atlas exited; CPU time 278780.511547
20:20:52 (1383376): called boinc_finish(0)

</stderr_txt>
]]>

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