Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:49 (522693): wrapper (7.7.26015): starting
00:02:49 (522693): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:02:49] Arguments: --nthreads 12
[2025-11-25 00:02:49] Threads: 12
[2025-11-25 00:02:49] Checking for CVMFS
[2025-11-25 00:02:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:02:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:02:50] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:02:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:02:50] 2.13.2.0 6892 34829 168404 153270 1 323 39046969 40960001 23862 16776704 0 92815569 99.746 56479340 35456 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:02:50] CVMFS is ok
[2025-11-25 00:02:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:02:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:02:50] Further information can be found at the LHC@home message board.
[2025-11-25 00:02:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:02:50] Checking for apptainer binary...
[2025-11-25 00:02:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:02:50] Running /usr/bin/apptainer --version
[2025-11-25 00:02:50] apptainer version 1.4.4-1.el9
[2025-11-25 00:02:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:02:50] c-212-5.aglt2.org
[2025-11-25 00:02:50] apptainer works
[2025-11-25 00:02:50] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:02:50] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:02:50] Starting ATLAS job with PandaID=6895380027
[2025-11-25 00:02:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 22:33:19]  *** The last 200 lines of the pilot log: ***
[2025-11-25 22:33:19] 2025-11-26 03:32:32,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:33:19] 2025-11-26 03:32:34,588 | INFO     | time since job start (80955s) is within the limit (172800.0s)
[2025-11-25 22:33:19] 2025-11-26 03:32:35,241 | INFO     | monitor loop #5359: job 0:6895380027 is in state 'finished'
[2025-11-25 22:33:19] 2025-11-26 03:32:35,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:33:19] 2025-11-26 03:32:36,598 | INFO     | time since job start (80957s) is within the limit (172800.0s)
[2025-11-25 22:33:19] 2025-11-26 03:32:37,746 | INFO     | monitor loop #5360: job 0:6895380027 is in state 'finished'
[2025-11-25 22:33:19] 2025-11-26 03:32:37,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:33:19] 2025-11-26 03:32:38,605 | INFO     | time since job start (80959s) is within the limit (172800.0s)
[2025-11-25 22:33:19] 2025-11-26 03:32:40,255 | INFO     | monitor loop #5361: job 0:6895380027 is in state 'finished'
[2025-11-25 22:33:19] 2025-11-26 03:32:40,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:33:19] 2025-11-26 03:32:40,612 | INFO     | time since job start (80961s) is within the limit (172800.0s)
[2025-11-25 22:33:19] 2025-11-26 03:32:42,630 | INFO     | time since job start (80963s) is within the limit (172800.0s)
[2025-11-25 22:33:19] 2025-11-26 03:32:42,759 | INFO     | monitor loop #5362: job 0:6895380027 is in state 'finished'
[2025-11-25 22:33:19] 2025-11-26 03:32:42,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 22:33:19] 2025-11-26 03:32:43,637 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 22:33:19] 2025-11-26 03:32:43,656 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2992.1188437500005
[2025-11-25 22:33:19] 2025-11-26 03:32:43,673 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895380027/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 22:33:19] 2025-11-26 03:32:43,673 | INFO     | extracted standard info from prmon json
[2025-11-25 22:33:19] 2025-11-26 03:32:43,673 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 22:33:19] 2025-11-26 03:32:43,674 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 22:33:19] 2025-11-26 03:32:43,771 | INFO     | fitting pss+swap vs Time
[2025-11-25 22:33:19] 2025-11-26 03:32:43,776 | INFO     | sum of square deviations: 724516279960.6438
[2025-11-25 22:33:19] 2025-11-26 03:32:43,841 | INFO     | sum of deviations: 19078060956149.332
[2025-11-25 22:33:19] 2025-11-26 03:32:43,841 | INFO     | mean x: 1764087487.7648833
[2025-11-25 22:33:19] 2025-11-26 03:32:43,841 | INFO     | mean y: 3899831.21250942
[2025-11-25 22:33:19] 2025-11-26 03:32:43,842 | INFO     | intersect: -46448291174.6086
[2025-11-25 22:33:19] 2025-11-26 03:32:43,847 | INFO     | chi2: 24.764947811046024
[2025-11-25 22:33:19] 2025-11-26 03:32:43,848 | INFO     | sum of square deviations: 716357701789.7756
[2025-11-25 22:33:19] 2025-11-26 03:32:43,926 | INFO     | sum of deviations: 19749376208318.277
[2025-11-25 22:33:19] 2025-11-26 03:32:43,926 | INFO     | mean x: 1764087335.2753403
[2025-11-25 22:33:19] 2025-11-26 03:32:43,926 | INFO     | mean y: 3912375.834341906
[2025-11-25 22:33:19] 2025-11-26 03:32:43,927 | INFO     | intersect: -48630484046.00594
[2025-11-25 22:33:19] 2025-11-26 03:32:43,928 | INFO     | chi2: 20.70880008039729
[2025-11-25 22:33:19] 2025-11-26 03:32:43,928 | INFO     | current chi2=20.70880008039729 (change=16.378583801576006 %)
[2025-11-25 22:33:19] 2025-11-26 03:32:43,928 | INFO     | right removable region: 1321
[2025-11-25 22:33:19] 2025-11-26 03:32:43,929 | INFO     | sum of square deviations: 716355705816.4214
[2025-11-25 22:33:19] 2025-11-26 03:32:44,055 | INFO     | sum of deviations: 18507990836854.516
[2025-11-25 22:33:19] 2025-11-26 03:32:44,055 | INFO     | mean x: 1764087640.273071
[2025-11-25 22:33:19] 2025-11-26 03:32:44,055 | INFO     | mean y: 3910477.8267776095
[2025-11-25 22:33:19] 2025-11-26 03:32:44,055 | INFO     | intersect: -45573611438.28868
[2025-11-25 22:33:19] 2025-11-26 03:32:44,056 | INFO     | chi2: 22.26607118256317
[2025-11-25 22:33:19] 2025-11-26 03:32:44,056 | INFO     | current chi2=22.26607118256317 (change=10.090377123138005 %)
[2025-11-25 22:33:19] 2025-11-26 03:32:44,056 | INFO     | left removable region: 10
[2025-11-25 22:33:19] 2025-11-26 03:32:44,057 | INFO     | sum of square deviations: 698621112649.5658
[2025-11-25 22:33:19] 2025-11-26 03:32:44,156 | INFO     | sum of deviations: 19077282253334.617
[2025-11-25 22:33:19] 2025-11-26 03:32:44,156 | INFO     | mean x: 1764087609.7925248
[2025-11-25 22:33:19] 2025-11-26 03:32:44,156 | INFO     | mean y: 3930308.57208238
[2025-11-25 22:33:19] 2025-11-26 03:32:44,157 | INFO     | intersect: -48168099769.34448
[2025-11-25 22:33:19] 2025-11-26 03:32:44,163 | INFO     | chi2: 17.32215959925541
[2025-11-25 22:33:19] 2025-11-26 03:32:44,163 | INFO     | current memory leak: 27.31 B/s (using 1311 data points, chi2=17.32)
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | could have reported an average CPU frequency of 3015 MHz (48 samples)
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | ..............................
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | . Timing measurements:
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | . get job = 0 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | . initial setup = 5 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | . payload setup = 12 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,165 | INFO     | . stage-in = 0 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,166 | INFO     | . payload execution = 80896 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,166 | INFO     | . stage-out = 8 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,166 | INFO     | . log creation = 2 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,166 | INFO     | ..............................
[2025-11-25 22:33:19] 2025-11-26 03:32:44,309 | INFO     | 
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | job summary report
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | --------------------------------------------------
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | PanDA job id: 6895380027
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | task id: 47556137
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | errors: (none)
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | pilot state: finished 
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | transexitcode: 0
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | exeerrorcode: 0
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | exeerrordiag: 
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | exitcode: 0
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | exitmsg: OK
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | cpuconsumptiontime: 221739 s
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | nevents: 1000
[2025-11-25 22:33:19] 2025-11-26 03:32:44,317 | INFO     | neventsw: 0
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | pid: 538666
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | pgrp: 538666
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | corecount: 12
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | event service: False
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | sizes: {0: 2284088, 1: 2284287, 10: 2284549, 12: 2284577, 80913: 2348153, 80921: 2357152, 80922: 2357336, 80944: 2357582}
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | --------------------------------------------------
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | 
[2025-11-25 22:33:19] 2025-11-26 03:32:44,318 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-25 22:33:19] 2025-11-26 03:32:44,449 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | job 6895380027 has completed (purged errors)
[2025-11-25 22:33:19] 2025-11-26 03:32:44,451 | INFO     | overall cleanup function is called
[2025-11-25 22:33:19] 2025-11-26 03:32:45,472 | INFO     | --- collectZombieJob: --- 10, [538666]
[2025-11-25 22:33:19] 2025-11-26 03:32:45,472 | INFO     | zombie collector waiting for pid 538666
[2025-11-25 22:33:19] 2025-11-26 03:32:45,472 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 22:33:19] 2025-11-26 03:32:45,472 | INFO     | collected zombie processes
[2025-11-25 22:33:19] 2025-11-26 03:32:45,472 | INFO     | will attempt to kill all subprocesses of pid=538666
[2025-11-25 22:33:19] 2025-11-26 03:32:46,073 | INFO     | process IDs to be killed: [538666] (in reverse order)
[2025-11-25 22:33:19] 2025-11-26 03:32:46,574 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 22:33:19] 2025-11-26 03:32:46,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 22:33:19] 2025-11-26 03:32:46,664 | INFO     | did not find any defunct processes belonging to 538666
[2025-11-25 22:33:19] 2025-11-26 03:32:46,740 | INFO     | did not find any defunct processes belonging to 538666
[2025-11-25 22:33:19] 2025-11-26 03:32:46,764 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 22:33:19] 2025-11-26 03:32:46,764 | INFO     | ready for new job
[2025-11-25 22:33:19] 2025-11-26 03:32:46,764 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 22:33:19] 2025-11-26 03:32:46,774 | INFO     | ***************************************
[2025-11-25 22:33:19] 2025-11-26 03:32:46,793 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 22:33:19] 2025-11-26 03:32:46,793 | INFO     | ***************************************
[2025-11-25 22:33:19] 2025-11-26 03:32:46,793 | INFO     | 
[2025-11-25 22:33:19] 2025-11-26 03:32:46,813 | INFO     | architecture information:
[2025-11-25 22:33:19] 2025-11-26 03:32:46,825 | INFO     | executing command: cat /etc/os-release
[2025-11-25 22:33:19] 2025-11-26 03:32:46,926 | INFO     | cat /etc/os-release:
[2025-11-25 22:33:19] NAME="CentOS Linux"
[2025-11-25 22:33:19] VERSION="7 (Core)"
[2025-11-25 22:33:19] ID="centos"
[2025-11-25 22:33:19] ID_LIKE="rhel fedora"
[2025-11-25 22:33:19] VERSION_ID="7"
[2025-11-25 22:33:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 22:33:19] ANSI_COLOR="0;31"
[2025-11-25 22:33:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 22:33:19] HOME_URL="https://www.centos.org/"
[2025-11-25 22:33:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 22:33:19] 
[2025-11-25 22:33:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 22:33:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 22:33:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 22:33:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 22:33:19] 
[2025-11-25 22:33:19] 2025-11-26 03:32:46,926 | INFO     | ***************************************
[2025-11-25 22:33:19] 2025-11-26 03:32:47,430 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-25 22:33:19] 2025-11-26 03:32:47,545 | INFO     | sufficient remaining disk space (123099676672 B)
[2025-11-25 22:33:19] 2025-11-26 03:32:47,546 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 22:33:19] 2025-11-26 03:32:47,546 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 22:33:19] 2025-11-26 03:32:47,546 | INFO     | update_server=False
[2025-11-25 22:33:19] 2025-11-26 03:32:47,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 22:33:19] 2025-11-26 03:32:47,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 22:33:19] 2025-11-26 03:32:47,783 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 22:33:19] 2025-11-26 03:32:47,783 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 22:33:19] 2025-11-26 03:32:47,783 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:33:19] 2025-11-26 03:32:47,783 | INFO     | will abort loop
[2025-11-25 22:33:19] 2025-11-26 03:32:47,852 | INFO     | all data control threads have been joined
[2025-11-25 22:33:19] 2025-11-26 03:32:48,552 | INFO     | [job] retrieve thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:48,719 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:48,776 | INFO     | all payload control threads have been joined
[2025-11-25 22:33:19] 2025-11-26 03:32:48,788 | INFO     | [job] job monitor thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:48,858 | INFO     | [data] control thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,141 | INFO     | all job control threads have been joined
[2025-11-25 22:33:19] 2025-11-26 03:32:49,167 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,239 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,329 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 22:33:19] 2025-11-26 03:32:49,343 | INFO     | [payload] failed_post thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,553 | INFO     | [data] copytool_out thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,576 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,768 | INFO     | [data] copytool_in thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,783 | INFO     | [payload] control thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,880 | INFO     | [payload] validate_post thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:49,975 | INFO     | [job] validate thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:50,147 | INFO     | [job] control thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:50,274 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 22:33:19] 2025-11-26 03:32:50,334 | INFO     | [job] queue monitor thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:51,420 | INFO     | [monitor] cgroup control has ended
[2025-11-25 22:33:19] 2025-11-26 03:32:54,283 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 22:33:19] 2025-11-26 03:32:55,526 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140353274709824)>', '<ExcThread(monitor, started 140352350582528)>']
[2025-11-25 22:33:19] 2025-11-26 03:33:00,562 | INFO     | all workflow threads have been joined
[2025-11-25 22:33:19] 2025-11-26 03:33:00,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 22:33:19] 2025-11-26 03:33:00,562 | INFO     | traces error code: 0
[2025-11-25 22:33:19] 2025-11-26 03:33:00,562 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 22:33:19] 2025-11-26 03:33:16,490 | INFO     | PID=526387 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 22:33:19] 2025-11-26 03:33:16,494 | INFO     | .. there are 17 such processes running
[2025-11-25 22:33:19] 2025-11-26 03:33:16,495 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 22:33:19] 2025-11-26 03:33:16,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 22:33:19] 2025-11-26 03:33:16,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 22:33:19] 2025-11-26 03:33:16,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 22:33:19] 2025-11-26 03:33:16,495 | INFO     | [monitor] control thread has ended
[2025-11-25 22:33:19] 2025-11-26 03:33:17,549 [wrapper] ==== pilot stdout END ====
[2025-11-25 22:33:19] 2025-11-26 03:33:17,574 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 22:33:19] 2025-11-26 03:33:17,592 [wrapper] pilotpid: 526387
[2025-11-25 22:33:19] 2025-11-26 03:33:17,618 [wrapper] Pilot exit status: 0
[2025-11-25 22:33:19] 2025-11-26 03:33:17,825 [wrapper] pandaids: 6895380027
[2025-11-25 22:33:19] 2025-11-26 03:33:18,384 [wrapper] supervise_pilot (15 min periods counter: 91)
[2025-11-25 22:33:19] 2025-11-26 03:33:18,443 [wrapper] No supervise_pilot CHILD process found
[2025-11-25 22:33:19] 2025-11-26 03:33:18,445 [wrapper] Test setup, not cleaning
[2025-11-25 22:33:19] 2025-11-26 03:33:18,508 [wrapper] apfmon messages muted
[2025-11-25 22:33:19] 2025-11-26 03:33:18,519 [wrapper] ==== wrapper stdout END ====
[2025-11-25 22:33:19] 2025-11-26 03:33:18,545 [wrapper] ==== wrapper stderr END ====
[2025-11-25 22:33:19]  *** Error codes and diagnostics ***
[2025-11-25 22:33:19]     "exeErrorCode": 0,
[2025-11-25 22:33:19]     "exeErrorDiag": "",
[2025-11-25 22:33:19]     "pilotErrorCode": 0,
[2025-11-25 22:33:19]     "pilotErrorDiag": "",
[2025-11-25 22:33:19]  *** Listing of results directory ***
[2025-11-25 22:33:19] total 1324548
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 21:30 pilot3.tar.gz
[2025-11-25 22:33:19] -rwx------. 1 boincer umatlas     36292 Nov 23 21:41 runpilot2-wrapper.sh
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 21:41 queuedata.json
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 22:33:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-25 22:33:19] -rw-r--r--. 2 boincer umatlas 408287074 Nov 25 00:02 EVNT.47483658._000985.pool.root.1
[2025-11-25 22:33:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-25 22:33:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:02 shared
[2025-11-25 22:33:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:02 input.tar.gz
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:02 boinc_lockfile
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:02 pandaJob.out
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas        57 Nov 25 00:02 setup.sh.local
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas    991801 Nov 25 00:03 agis_schedconf.cvmfs.json
[2025-11-25 22:33:19] drwx------. 5 boincer umatlas      4096 Nov 25 00:03 pilot3
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas       533 Nov 25 22:19 boinc_task_state.xml
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas 916874424 Nov 25 22:30 HITS.47556137._009720.pool.root.1
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas      6947 Nov 25 22:30 init_data.xml
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas      1076 Nov 25 22:32 memory_monitor_summary.json
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas   1516240 Nov 25 22:32 agis_ddmendpoints.agis.ALL.json
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas   2862264 Nov 25 22:32 log.47556137._009720.job.log.tgz.1
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas      8654 Nov 25 22:32 heartbeat.json
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 22:33 boinc_mmap_file
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas        29 Nov 25 22:33 wrapper_checkpoint.txt
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas        95 Nov 25 22:33 pilot_heartbeat.json
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas       822 Nov 25 22:33 pilotlog.txt
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas  10762863 Nov 25 22:33 log.47556137._009720.job.log.1
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas       353 Nov 25 22:33 output.list
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas       620 Nov 25 22:33 runtime_log
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas  13649920 Nov 25 22:33 result.tar.gz
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas       666 Nov 25 22:33 xkuNDmdhbh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmAtIKDmao346n.diag
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas      9340 Nov 25 22:33 runtime_log.err
[2025-11-25 22:33:19] -rw-r--r--. 1 boincer umatlas     21733 Nov 25 22:33 stderr.txt
[2025-11-25 22:33:19] HITS file was successfully produced:
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas 916874424 Nov 25 22:30 shared/HITS.pool.root.1
[2025-11-25 22:33:19]  *** Contents of shared directory: ***
[2025-11-25 22:33:19] total 1308044
[2025-11-25 22:33:19] -rw-r--r--. 2 boincer umatlas 408287074 Nov 25 00:02 ATLAS.root_0
[2025-11-25 22:33:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:02 start_atlas.sh
[2025-11-25 22:33:19] -rw-r--r--. 2 boincer umatlas    590101 Nov 25 00:02 input.tar.gz
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas 916874424 Nov 25 22:30 HITS.pool.root.1
[2025-11-25 22:33:19] -rw-------. 1 boincer umatlas  13649920 Nov 25 22:33 result.tar.gz
22:33:21 (522693): run_atlas exited; CPU time 220387.990297
22:33:21 (522693): called boinc_finish(0)

</stderr_txt>
]]>

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