Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
18:02:18 (518367): wrapper (7.7.26015): starting
18:02:18 (518367): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 18:02:18] Arguments: --nthreads 8
[2025-11-24 18:02:18] Threads: 8
[2025-11-24 18:02:18] Checking for CVMFS
[2025-11-24 18:02:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 18:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 18:02:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 18:02:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 18:02:19] 2.13.2.0 3460 299 48480 153264 0 90 2278545 4096001 3502 130560 0 1537953 99.626 389044 1069 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 18:02:19] CVMFS is ok
[2025-11-24 18:02:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 18:02:19] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 18:02:19] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 18:02:19] Further information can be found at the LHC@home message board.
[2025-11-24 18:02:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 18:02:19] Checking for apptainer binary...
[2025-11-24 18:02:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 18:02:19] Running /usr/bin/apptainer --version
[2025-11-24 18:02:19] apptainer version 1.4.3
[2025-11-24 18:02:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 18:02:19] painter
[2025-11-24 18:02:19] apptainer works
[2025-11-24 18:02:19] Set ATHENA_PROC_NUMBER=8
[2025-11-24 18:02:19] Set ATHENA_CORE_NUMBER=8
[2025-11-24 18:02:19] Starting ATLAS job with PandaID=6895325952
[2025-11-24 18:02:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:13:06 (694520): wrapper (7.7.26015): starting
21:13:06 (694520): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 21:13:06] Arguments: --nthreads 8
[2025-11-24 21:13:06] Threads: 8
[2025-11-24 21:13:06] This job has been restarted, cleaning up previous attempt
[2025-11-24 21:13:06] Checking for CVMFS
[2025-11-24 21:13:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 21:13:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 21:13:06] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 21:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 21:13:06] 2.13.2.0 3460 490 55956 153269 2 49 3555195 4096000 0 130560 0 1968209 99.440 855495 1095 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-24 21:13:06] CVMFS is ok
[2025-11-24 21:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 21:13:06] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-24 21:13:06] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-24 21:13:06] Further information can be found at the LHC@home message board.
[2025-11-24 21:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 21:13:06] Checking for apptainer binary...
[2025-11-24 21:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 21:13:06] Running /usr/bin/apptainer --version
[2025-11-24 21:13:06] apptainer version 1.4.3
[2025-11-24 21:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 21:13:06] painter
[2025-11-24 21:13:06] apptainer works
[2025-11-24 21:13:06] Set ATHENA_PROC_NUMBER=8
[2025-11-24 21:13:06] Set ATHENA_CORE_NUMBER=8
[2025-11-24 21:13:06] Starting ATLAS job with PandaID=6895325952
[2025-11-24 21:13:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 00:24:36]  *** The last 200 lines of the pilot log: ***
[2025-11-25 00:24:36] 2025-11-25 07:23:51,491 | INFO     | monitor loop #867: job 0:6895325952 is in state 'finished'
[2025-11-25 00:24:36] 2025-11-25 07:23:51,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 00:24:36] 2025-11-25 07:23:52,526 | INFO     | time since job start (11439s) is within the limit (172800.0s)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,608 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-25 00:24:36] 2025-11-25 07:23:53,611 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4753.159812499999
[2025-11-25 00:24:36] 2025-11-25 07:23:53,613 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6895325952/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,614 | INFO     | extracted standard info from prmon json
[2025-11-25 00:24:36] 2025-11-25 07:23:53,614 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 00:24:36] 2025-11-25 07:23:53,614 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 00:24:36] 2025-11-25 07:23:53,615 | INFO     | fitting pss+swap vs Time
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | sum of square deviations: 2027815944.919785
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | sum of deviations: 48429891193.91443
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | mean x: 1764049683.1283422
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | mean y: 2875135.336898396
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | intersect: -42127543272.99864
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | chi2: 2.9636829756255025
[2025-11-25 00:24:36] 2025-11-25 07:23:53,616 | INFO     | sum of square deviations: 1869474248.5934007
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | sum of deviations: 75595069474.65933
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | mean x: 1764049530.6263735
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | mean y: 2900888.8626373624
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | intersect: -71329157803.455
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | chi2: 1.596897877709939
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | current chi2=1.596897877709939 (change=46.11779023453396 %)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,617 | INFO     | sum of square deviations: 1719597461.265537
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | sum of deviations: 72456093618.60454
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | mean x: 1764049378.1242938
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | mean y: 2897696.8361581923
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | intersect: -74326199529.87685
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | chi2: 1.5951069671323372
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | current chi2=1.5951069671323372 (change=0.1121493492226323 %)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | right removable region: 176
[2025-11-25 00:24:36] 2025-11-25 07:23:53,618 | INFO     | sum of square deviations: 1869470772.3351657
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | sum of deviations: 13137483735.697832
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | mean x: 1764049835.6318681
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | mean y: 2908741.741758242
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | intersect: -12393741886.620764
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | chi2: 1.4467275026803796
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | current chi2=1.4467275026803796 (change=51.184809084546586 %)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | sum of square deviations: 1719590874.745762
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | sum of deviations: 5655799039.644058
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | mean x: 1764049988.1355932
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | mean y: 2916342.0564971752
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | intersect: -5799110393.08566
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | chi2: 1.4218277648645632
[2025-11-25 00:24:36] 2025-11-25 07:23:53,619 | INFO     | current chi2=1.4218277648645632 (change=1.721107656395847 %)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | left removable region: 20
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | sum of square deviations: 1177299469.8974319
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | sum of deviations: 19903056020.410263
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | mean x: 1764049957.6410255
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | mean y: 2955451.435897436
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | intersect: -29819520500.91505
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | chi2: 0.010876523995277148
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | current memory leak: 16.91 B/s (using 156 data points, chi2=0.01)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | could have reported an average CPU frequency of 4693 MHz (10 samples)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,620 | INFO     | ..............................
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . Timing measurements:
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . get job = 0 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . initial setup = 3 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . payload setup = 2 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . stage-in = 0 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . payload execution = 11407 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . stage-out = 5 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | . log creation = 0 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,621 | INFO     | ..............................
[2025-11-25 00:24:36] 2025-11-25 07:23:53,710 | INFO     | 
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | job summary report
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | --------------------------------------------------
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | PanDA job id: 6895325952
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | task id: 47556137
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | errors: (none)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | pilot state: finished 
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | transexitcode: 0
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | exeerrorcode: 0
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | exeerrordiag: 
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | exitcode: 0
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | exitmsg: OK
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | cpuconsumptiontime: 81827 s
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | nevents: 1000
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | neventsw: 0
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | pid: 716224
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | pgrp: 716224
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | corecount: 8
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | event service: False
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | sizes: {0: 2284312, 1: 2284574, 10: 2284602, 11412: 2314923, 11413: 2314922, 11418: 2323986, 11422: 2324170, 11428: 2324416}
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | --------------------------------------------------
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | 
[2025-11-25 00:24:36] 2025-11-25 07:23:53,711 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,723 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | job 6895325952 has completed (purged errors)
[2025-11-25 00:24:36] 2025-11-25 07:23:53,724 | INFO     | overall cleanup function is called
[2025-11-25 00:24:36] 2025-11-25 07:23:54,735 | INFO     | --- collectZombieJob: --- 10, [716224]
[2025-11-25 00:24:36] 2025-11-25 07:23:54,735 | INFO     | zombie collector waiting for pid 716224
[2025-11-25 00:24:36] 2025-11-25 07:23:54,735 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 00:24:36] 2025-11-25 07:23:54,735 | INFO     | collected zombie processes
[2025-11-25 00:24:36] 2025-11-25 07:23:54,735 | INFO     | will attempt to kill all subprocesses of pid=716224
[2025-11-25 00:24:36] 2025-11-25 07:23:54,800 | INFO     | process IDs to be killed: [716224] (in reverse order)
[2025-11-25 00:24:36] 2025-11-25 07:23:54,835 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 00:24:36] 2025-11-25 07:23:54,835 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 00:24:36] 2025-11-25 07:23:54,838 | INFO     | did not find any defunct processes belonging to 716224
[2025-11-25 00:24:36] 2025-11-25 07:23:54,840 | INFO     | did not find any defunct processes belonging to 716224
[2025-11-25 00:24:36] 2025-11-25 07:23:54,841 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 00:24:36] 2025-11-25 07:23:54,841 | INFO     | ready for new job
[2025-11-25 00:24:36] 2025-11-25 07:23:54,841 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 00:24:36] 2025-11-25 07:23:54,842 | INFO     | ***************************************
[2025-11-25 00:24:36] 2025-11-25 07:23:54,842 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 00:24:36] 2025-11-25 07:23:54,842 | INFO     | ***************************************
[2025-11-25 00:24:36] 2025-11-25 07:23:54,842 | INFO     | 
[2025-11-25 00:24:36] 2025-11-25 07:23:54,843 | INFO     | architecture information:
[2025-11-25 00:24:36] 2025-11-25 07:23:54,843 | INFO     | executing command: cat /etc/os-release
[2025-11-25 00:24:36] 2025-11-25 07:23:54,853 | INFO     | cat /etc/os-release:
[2025-11-25 00:24:36] NAME="CentOS Linux"
[2025-11-25 00:24:36] VERSION="7 (Core)"
[2025-11-25 00:24:36] ID="centos"
[2025-11-25 00:24:36] ID_LIKE="rhel fedora"
[2025-11-25 00:24:36] VERSION_ID="7"
[2025-11-25 00:24:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 00:24:36] ANSI_COLOR="0;31"
[2025-11-25 00:24:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 00:24:36] HOME_URL="https://www.centos.org/"
[2025-11-25 00:24:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 00:24:36] 
[2025-11-25 00:24:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 00:24:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 00:24:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 00:24:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 00:24:36] 
[2025-11-25 00:24:36] 2025-11-25 07:23:54,853 | INFO     | ***************************************
[2025-11-25 00:24:36] 2025-11-25 07:23:55,356 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | INFO     | sufficient remaining disk space (344069242880 B)
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | INFO     | update_server=False
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 00:24:36] 2025-11-25 07:23:55,366 | INFO     | aborting loop
[2025-11-25 00:24:36] 2025-11-25 07:23:55,510 | INFO     | all job control threads have been joined
[2025-11-25 00:24:36] 2025-11-25 07:23:55,529 | INFO     | all data control threads have been joined
[2025-11-25 00:24:36] 2025-11-25 07:23:56,371 | INFO     | [job] retrieve thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,371 | INFO     | [job] queue monitor thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,372 | INFO     | [job] job monitor thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,415 | INFO     | all payload control threads have been joined
[2025-11-25 00:24:36] 2025-11-25 07:23:56,515 | INFO     | [job] control thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,534 | INFO     | [data] control thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,561 | INFO     | [payload] failed_post thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,637 | INFO     | [data] copytool_in thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,896 | INFO     | [payload] validate_post thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:56,978 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:57,371 | INFO     | [data] copytool_out thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:57,420 | INFO     | [payload] control thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:57,635 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:57,693 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:57,715 | INFO     | [job] validate thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:57,855 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:23:58,006 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 00:24:36] 2025-11-25 07:24:02,011 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 00:24:36] 2025-11-25 07:24:25,683 | INFO     | PID=702237 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 00:24:36] 2025-11-25 07:24:25,683 | INFO     | .. there are 3 such processes running
[2025-11-25 00:24:36] 2025-11-25 07:24:25,683 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 00:24:36] 2025-11-25 07:24:25,683 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 00:24:36] 2025-11-25 07:24:25,683 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 00:24:36] 2025-11-25 07:24:30,185 | INFO     | [monitor] cgroup control has ended
[2025-11-25 00:24:36] 2025-11-25 07:24:31,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980225951552)>', '<ExcThread(monitor, started 139979736991488)>']
[2025-11-25 00:24:36] 2025-11-25 07:24:31,713 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 00:24:36] 2025-11-25 07:24:31,713 | INFO     | [monitor] control thread has ended
[2025-11-25 00:24:36] 2025-11-25 07:24:36,709 | INFO     | all workflow threads have been joined
[2025-11-25 00:24:36] 2025-11-25 07:24:36,709 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 00:24:36] 2025-11-25 07:24:36,709 | INFO     | traces error code: 0
[2025-11-25 00:24:36] 2025-11-25 07:24:36,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 00:24:36] 2025-11-25 07:24:36,774 [wrapper] ==== pilot stdout END ====
[2025-11-25 00:24:36] 2025-11-25 07:24:36,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 00:24:36] 2025-11-25 07:24:36,778 [wrapper] pilotpid: 702237
[2025-11-25 00:24:36] 2025-11-25 07:24:36,780 [wrapper] Pilot exit status: 0
[2025-11-25 00:24:36] 2025-11-25 07:24:36,785 [wrapper] pandaids: 6895325952 6895325952
[2025-11-25 00:24:36] 2025-11-25 07:24:36,809 [wrapper] cleanup supervisor_pilot  865022 702239
[2025-11-25 00:24:36] 2025-11-25 07:24:36,811 [wrapper] Test setup, not cleaning
[2025-11-25 00:24:36] 2025-11-25 07:24:36,813 [wrapper] apfmon messages muted
[2025-11-25 00:24:36] 2025-11-25 07:24:36,814 [wrapper] ==== wrapper stdout END ====
[2025-11-25 00:24:36] 2025-11-25 07:24:36,816 [wrapper] ==== wrapper stderr END ====
[2025-11-25 00:24:36]  *** Error codes and diagnostics ***
[2025-11-25 00:24:36]     "exeErrorCode": 0,
[2025-11-25 00:24:36]     "exeErrorDiag": "",
[2025-11-25 00:24:36]     "pilotErrorCode": 0,
[2025-11-25 00:24:36]     "pilotErrorDiag": "",
[2025-11-25 00:24:36]  *** Listing of results directory ***
[2025-11-25 00:24:36] total 1700400
[2025-11-25 00:24:36] drwx------ 5 boinc boinc      4096 Nov  5 10:16 pilot3
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc    576529 Nov 21 07:47 pilot3.tar.gz
[2025-11-25 00:24:36] -rwx------ 1 boinc boinc     36292 Nov 21 07:53 runpilot2-wrapper.sh
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc      5112 Nov 21 07:53 queuedata.json
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc       100 Nov 24 18:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 00:24:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 24 18:02 run_atlas
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc       105 Nov 24 18:02 job.xml
[2025-11-25 00:24:36] -rw-r--r-- 3 boinc boinc 408938790 Nov 24 18:02 EVNT.47483658._000037.pool.root.1
[2025-11-25 00:24:36] -rw-r--r-- 3 boinc boinc 408938790 Nov 24 18:02 ATLAS.root_0
[2025-11-25 00:24:36] -rw-r--r-- 2 boinc boinc     15847 Nov 24 18:02 start_atlas.sh
[2025-11-25 00:24:36] drwxrwx--x 2 boinc boinc      4096 Nov 24 18:02 shared
[2025-11-25 00:24:36] -rw-r--r-- 2 boinc boinc    590099 Nov 24 18:02 input.tar.gz
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc         0 Nov 24 18:02 boinc_lockfile
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc      2783 Nov 24 21:13 pandaJob.out
[2025-11-25 00:24:36] -rw------- 1 boinc boinc    991801 Nov 24 21:13 agis_schedconf.cvmfs.json
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc      9943 Nov 24 22:42 init_data.xml
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc       533 Nov 25 00:20 boinc_task_state.xml
[2025-11-25 00:24:36] -rw------- 1 boinc boinc 913012612 Nov 25 00:23 HITS.47556137._000370.pool.root.1
[2025-11-25 00:24:36] -rw------- 1 boinc boinc      1029 Nov 25 00:23 memory_monitor_summary.json
[2025-11-25 00:24:36] -rw------- 1 boinc boinc   1516227 Nov 25 00:23 agis_ddmendpoints.agis.ALL.json
[2025-11-25 00:24:36] -rw------- 1 boinc boinc        95 Nov 25 00:23 pilot_heartbeat.json
[2025-11-25 00:24:36] -rw------- 1 boinc boinc   1504821 Nov 25 00:23 log.47556137._000370.job.log.tgz.1
[2025-11-25 00:24:36] -rw------- 1 boinc boinc      8545 Nov 25 00:23 heartbeat.json
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc        29 Nov 25 00:24 wrapper_checkpoint.txt
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc      8192 Nov 25 00:24 boinc_mmap_file
[2025-11-25 00:24:36] -rw------- 1 boinc boinc      4830 Nov 25 00:24 pilotlog.txt
[2025-11-25 00:24:36] -rw------- 1 boinc boinc   1689869 Nov 25 00:24 log.47556137._000370.job.log.1
[2025-11-25 00:24:36] -rw------- 1 boinc boinc       353 Nov 25 00:24 output.list
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc       620 Nov 25 00:24 runtime_log
[2025-11-25 00:24:36] -rw------- 1 boinc boinc   3215360 Nov 25 00:24 result.tar.gz
[2025-11-25 00:24:36] -rw------- 1 boinc boinc       786 Nov 25 00:24 zCwLDm5ghg8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKVJKDmTjw1Zn.diag
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc      9008 Nov 25 00:24 runtime_log.err
[2025-11-25 00:24:36] -rw-r--r-- 1 boinc boinc     23613 Nov 25 00:24 stderr.txt
[2025-11-25 00:24:36] HITS file was successfully produced:
[2025-11-25 00:24:36] -rw------- 1 boinc boinc 913012612 Nov 25 00:23 shared/HITS.pool.root.1
[2025-11-25 00:24:36]  *** Contents of shared directory: ***
[2025-11-25 00:24:36] total 1294716
[2025-11-25 00:24:36] -rw-r--r-- 3 boinc boinc 408938790 Nov 24 18:02 ATLAS.root_0
[2025-11-25 00:24:36] -rw-r--r-- 2 boinc boinc     15847 Nov 24 18:02 start_atlas.sh
[2025-11-25 00:24:36] -rw-r--r-- 2 boinc boinc    590099 Nov 24 18:02 input.tar.gz
[2025-11-25 00:24:36] -rw------- 1 boinc boinc 913012612 Nov 25 00:23 HITS.pool.root.1
[2025-11-25 00:24:36] -rw------- 1 boinc boinc   3215360 Nov 25 00:24 result.tar.gz
00:24:37 (694520): run_atlas exited; CPU time 81722.974873
00:24:37 (694520): called boinc_finish(0)

</stderr_txt>
]]>

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