Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:24:11 (3769226): wrapper (7.7.26015): starting
21:24:11 (3769226): wrapper: running run_atlas (--nthreads 4)
[2025-11-27 21:24:11] Arguments: --nthreads 4
[2025-11-27 21:24:11] Threads: 4
[2025-11-27 21:24:11] Checking for CVMFS
[2025-11-27 21:24:11] No cvmfs_config command found, will try listing directly
[2025-11-27 21:24:11] CVMFS is ok
[2025-11-27 21:24:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 21:24:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 21:24:11] Further information can be found at the LHC@home message board.
[2025-11-27 21:24:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 21:24:11] Checking for apptainer binary...
[2025-11-27 21:24:11] which: no apptainer in ((null))
[2025-11-27 21:24:11] apptainer is not installed, using version from CVMFS
[2025-11-27 21:24:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 21:24:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot116/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2025-11-27 21:24:11] apptainer works
[2025-11-27 21:24:11] Set ATHENA_PROC_NUMBER=4
[2025-11-27 21:24:11] Set ATHENA_CORE_NUMBER=4
[2025-11-27 21:24:11] Starting ATLAS job with PandaID=6895364226
[2025-11-27 21:24:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot116/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 12:37:44]  *** The last 200 lines of the pilot log: ***
[2025-11-28 12:37:44] 2025-11-28 11:36:16,427 | INFO     | monitor loop #3701: job 0:6895364226 is in state 'finished'
[2025-11-28 12:37:44] 2025-11-28 11:36:16,428 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 12:37:44] 2025-11-28 11:36:16,508 | INFO     | time since job start (54710s) is within the limit (172800.0s)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,783 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 12:37:44] 2025-11-28 11:36:17,804 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2711.3385
[2025-11-28 12:37:44] 2025-11-28 11:36:17,829 | INFO     | using path: /scratch/boinc/var/slot116/slots/0/PanDA_Pilot-6895364226/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,829 | INFO     | extracted standard info from prmon json
[2025-11-28 12:37:44] 2025-11-28 11:36:17,829 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 12:37:44] 2025-11-28 11:36:17,830 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 12:37:44] 2025-11-28 11:36:17,844 | INFO     | fitting pss+swap vs Time
[2025-11-28 12:37:44] 2025-11-28 11:36:17,845 | INFO     | sum of square deviations: 223797491008.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,863 | INFO     | sum of deviations: 415740433462.00006
[2025-11-28 12:37:44] 2025-11-28 11:36:17,863 | INFO     | mean x: 1764302429.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,863 | INFO     | mean y: 2281130.149386845
[2025-11-28 12:37:44] 2025-11-28 11:36:17,863 | INFO     | intersect: -3275199119.0116715
[2025-11-28 12:37:44] 2025-11-28 11:36:17,864 | INFO     | chi2: 4.582920612330113
[2025-11-28 12:37:44] 2025-11-28 11:36:17,865 | INFO     | sum of square deviations: 220075877043.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,882 | INFO     | sum of deviations: 624890139771.9999
[2025-11-28 12:37:44] 2025-11-28 11:36:17,883 | INFO     | mean x: 1764302276.5
[2025-11-28 12:37:44] 2025-11-28 11:36:17,883 | INFO     | mean y: 2289693.9730941704
[2025-11-28 12:37:44] 2025-11-28 11:36:17,883 | INFO     | intersect: -5007323858.296104
[2025-11-28 12:37:44] 2025-11-28 11:36:17,884 | INFO     | chi2: 1.9747321601343621
[2025-11-28 12:37:44] 2025-11-28 11:36:17,884 | INFO     | current chi2=1.9747321601343621 (change=56.91105460519115 %)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,885 | INFO     | sum of square deviations: 216395752228.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,902 | INFO     | sum of deviations: 623382135043.0001
[2025-11-28 12:37:44] 2025-11-28 11:36:17,902 | INFO     | mean x: 1764302124.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,902 | INFO     | mean y: 2289630.562570462
[2025-11-28 12:37:44] 2025-11-28 11:36:17,903 | INFO     | intersect: -5080224298.644352
[2025-11-28 12:37:44] 2025-11-28 11:36:17,903 | INFO     | chi2: 1.9670388951632733
[2025-11-28 12:37:44] 2025-11-28 11:36:17,904 | INFO     | current chi2=1.9670388951632733 (change=0.38958523724885014 %)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,904 | INFO     | right removable region: 886
[2025-11-28 12:37:44] 2025-11-28 11:36:17,905 | INFO     | sum of square deviations: 220075877043.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,922 | INFO     | sum of deviations: 255148850195.99994
[2025-11-28 12:37:44] 2025-11-28 11:36:17,923 | INFO     | mean x: 1764302581.5
[2025-11-28 12:37:44] 2025-11-28 11:36:17,923 | INFO     | mean y: 2287697.4125560536
[2025-11-28 12:37:44] 2025-11-28 11:36:17,923 | INFO     | intersect: -2043187622.808951
[2025-11-28 12:37:44] 2025-11-28 11:36:17,924 | INFO     | chi2: 2.735031708254498
[2025-11-28 12:37:44] 2025-11-28 11:36:17,924 | INFO     | current chi2=2.735031708254498 (change=40.32120694179089 %)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,925 | INFO     | sum of square deviations: 216395752228.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,943 | INFO     | sum of deviations: 244536023348.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,943 | INFO     | mean x: 1764302734.0
[2025-11-28 12:37:44] 2025-11-28 11:36:17,943 | INFO     | mean y: 2288136.5862457724
[2025-11-28 12:37:44] 2025-11-28 11:36:17,943 | INFO     | intersect: -1991445890.5946245
[2025-11-28 12:37:44] 2025-11-28 11:36:17,944 | INFO     | chi2: 2.732780900219124
[2025-11-28 12:37:44] 2025-11-28 11:36:17,944 | INFO     | current chi2=2.732780900219124 (change=0.08229550058161035 %)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,944 | INFO     | left removable region: 20
[2025-11-28 12:37:44] 2025-11-28 11:36:17,945 | INFO     | sum of square deviations: 201387041052.5
[2025-11-28 12:37:44] 2025-11-28 11:36:17,962 | INFO     | sum of deviations: 446206020952.5
[2025-11-28 12:37:44] 2025-11-28 11:36:17,962 | INFO     | mean x: 1764302703.5
[2025-11-28 12:37:44] 2025-11-28 11:36:17,962 | INFO     | mean y: 2296953.5577367204
[2025-11-28 12:37:44] 2025-11-28 11:36:17,962 | INFO     | intersect: -3906805066.9602838
[2025-11-28 12:37:44] 2025-11-28 11:36:17,963 | INFO     | chi2: 0.09521012864083271
[2025-11-28 12:37:44] 2025-11-28 11:36:17,964 | INFO     | current memory leak: 2.22 B/s (using 866 data points, chi2=0.10)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | could have reported an average CPU frequency of 2703 MHz (34 samples)
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | ..............................
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . Timing measurements:
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . get job = 0 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . initial setup = 1 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . payload setup = 9 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . stage-in = 0 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . payload execution = 54669 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,965 | INFO     | . stage-out = 2 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,966 | INFO     | . log creation = 0 s
[2025-11-28 12:37:44] 2025-11-28 11:36:17,966 | INFO     | ..............................
[2025-11-28 12:37:44] 2025-11-28 11:36:18,062 | INFO     | 
[2025-11-28 12:37:44] 2025-11-28 11:36:18,062 | INFO     | job summary report
[2025-11-28 12:37:44] 2025-11-28 11:36:18,062 | INFO     | --------------------------------------------------
[2025-11-28 12:37:44] 2025-11-28 11:36:18,062 | INFO     | PanDA job id: 6895364226
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | task id: 47556137
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | errors: (none)
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | pilot state: finished 
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | transexitcode: 0
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | exeerrorcode: 0
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | exeerrordiag: 
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | exitcode: 0
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | exitmsg: OK
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | cpuconsumptiontime: 220366 s
[2025-11-28 12:37:44] 2025-11-28 11:36:18,063 | INFO     | nevents: 1000
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | neventsw: 0
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | pid: 3781260
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | pgrp: 3781260
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | corecount: 4
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | event service: False
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | sizes: {0: 2284099, 1: 2284354, 8: 2284616, 12: 2284644, 54684: 2337212, 54686: 2346230, 54687: 2346414, 54694: 2346660}
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | --------------------------------------------------
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | 
[2025-11-28 12:37:44] 2025-11-28 11:36:18,064 | INFO     | executing command: ls -lF /scratch/boinc/var/slot116/slots/0
[2025-11-28 12:37:44] 2025-11-28 11:36:18,099 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,100 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,100 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,100 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,102 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 12:37:44] 2025-11-28 11:36:18,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,102 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 12:37:44] 2025-11-28 11:36:18,102 | INFO     | job 6895364226 has completed (purged errors)
[2025-11-28 12:37:44] 2025-11-28 11:36:18,102 | INFO     | overall cleanup function is called
[2025-11-28 12:37:44] 2025-11-28 11:36:19,119 | INFO     | --- collectZombieJob: --- 10, [3781260]
[2025-11-28 12:37:44] 2025-11-28 11:36:19,120 | INFO     | zombie collector waiting for pid 3781260
[2025-11-28 12:37:44] 2025-11-28 11:36:19,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 12:37:44] 2025-11-28 11:36:19,120 | INFO     | collected zombie processes
[2025-11-28 12:37:44] 2025-11-28 11:36:19,120 | INFO     | will attempt to kill all subprocesses of pid=3781260
[2025-11-28 12:37:44] 2025-11-28 11:36:19,724 | INFO     | process IDs to be killed: [3781260] (in reverse order)
[2025-11-28 12:37:44] 2025-11-28 11:36:19,967 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 12:37:44] 2025-11-28 11:36:19,967 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 12:37:44] 2025-11-28 11:36:20,001 | INFO     | did not find any defunct processes belonging to 3781260
[2025-11-28 12:37:44] 2025-11-28 11:36:20,032 | INFO     | did not find any defunct processes belonging to 3781260
[2025-11-28 12:37:44] 2025-11-28 11:36:20,034 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 12:37:44] 2025-11-28 11:36:20,034 | INFO     | ready for new job
[2025-11-28 12:37:44] 2025-11-28 11:36:20,034 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 12:37:44] 2025-11-28 11:36:20,041 | INFO     | ***************************************
[2025-11-28 12:37:44] 2025-11-28 11:36:20,041 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 12:37:44] 2025-11-28 11:36:20,041 | INFO     | ***************************************
[2025-11-28 12:37:44] 2025-11-28 11:36:20,041 | INFO     | 
[2025-11-28 12:37:44] 2025-11-28 11:36:20,049 | INFO     | architecture information:
[2025-11-28 12:37:44] 2025-11-28 11:36:20,050 | INFO     | executing command: cat /etc/os-release
[2025-11-28 12:37:44] 2025-11-28 11:36:20,076 | INFO     | cat /etc/os-release:
[2025-11-28 12:37:44] NAME="CentOS Linux"
[2025-11-28 12:37:44] VERSION="7 (Core)"
[2025-11-28 12:37:44] ID="centos"
[2025-11-28 12:37:44] ID_LIKE="rhel fedora"
[2025-11-28 12:37:44] VERSION_ID="7"
[2025-11-28 12:37:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 12:37:44] ANSI_COLOR="0;31"
[2025-11-28 12:37:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 12:37:44] HOME_URL="https://www.centos.org/"
[2025-11-28 12:37:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 12:37:44] 
[2025-11-28 12:37:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 12:37:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 12:37:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 12:37:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 12:37:44] 
[2025-11-28 12:37:44] 2025-11-28 11:36:20,077 | INFO     | ***************************************
[2025-11-28 12:37:44] 2025-11-28 11:36:20,580 | INFO     | executing command: df -mP /scratch/boinc/var/slot116/slots/0
[2025-11-28 12:37:44] 2025-11-28 11:36:20,608 | INFO     | sufficient remaining disk space (3305231089664 B)
[2025-11-28 12:37:44] 2025-11-28 11:36:20,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 12:37:44] 2025-11-28 11:36:20,608 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 12:37:44] 2025-11-28 11:36:20,608 | INFO     | update_server=False
[2025-11-28 12:37:44] 2025-11-28 11:36:20,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 12:37:44] 2025-11-28 11:36:20,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 11:36:20,609 | INFO     | aborting loop
[2025-11-28 12:37:44] 2025-11-28 11:36:20,689 | INFO     | all data control threads have been joined
[2025-11-28 12:37:44] 2025-11-28 11:36:20,736 | INFO     | all job control threads have been joined
[2025-11-28 12:37:44] 2025-11-28 11:36:20,845 | INFO     | all payload control threads have been joined
[2025-11-28 12:37:44] 2025-11-28 11:36:20,856 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 11:36:21,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 11:36:21,614 | INFO     | [job] retrieve thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:21,614 | INFO     | [job] job monitor thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:21,695 | INFO     | [data] control thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:21,741 | INFO     | [job] control thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:21,788 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:21,850 | INFO     | [payload] control thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:22,097 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:22,118 | INFO     | [job] validate thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:22,169 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:22,536 | INFO     | [payload] failed_post thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:22,862 | INFO     | [data] copytool_out thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:23,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:23,044 | INFO     | [data] copytool_in thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:23,073 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 12:37:44] 2025-11-28 11:36:23,163 | INFO     | [payload] validate_post thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:24,078 | INFO     | [job] queue monitor thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:25,190 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 12:37:44] 2025-11-28 11:36:50,535 | INFO     | PID=3773250 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-28 12:37:44] 2025-11-28 11:36:50,535 | INFO     | .. there are 6 such processes running
[2025-11-28 12:37:44] 2025-11-28 11:36:50,536 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 12:37:44] 2025-11-28 11:36:50,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 12:37:44] 2025-11-28 11:36:50,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 12:37:44] 2025-11-28 11:36:52,868 | INFO     | [monitor] cgroup control has ended
[2025-11-28 12:37:44] 2025-11-28 11:36:54,311 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23164257969984)>', '<ExcThread(monitor, started 23164021081856)>']
[2025-11-28 12:37:44] 2025-11-28 11:36:54,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 12:37:44] 2025-11-28 11:36:54,554 | INFO     | [monitor] control thread has ended
[2025-11-28 12:37:44] 2025-11-28 11:36:59,336 | INFO     | all workflow threads have been joined
[2025-11-28 12:37:44] 2025-11-28 11:36:59,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 12:37:44] 2025-11-28 11:36:59,336 | INFO     | traces error code: 0
[2025-11-28 12:37:44] 2025-11-28 11:36:59,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 12:37:44] 2025-11-28 11:36:59,492 [wrapper] ==== pilot stdout END ====
[2025-11-28 12:37:44] 2025-11-28 11:36:59,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 12:37:44] 2025-11-28 11:36:59,498 [wrapper] pilotpid: 3773250
[2025-11-28 12:37:44] 2025-11-28 11:36:59,501 [wrapper] Pilot exit status: 0
[2025-11-28 12:37:44] 2025-11-28 11:36:59,514 [wrapper] pandaids: 6895364226
[2025-11-28 12:37:44] 2025-11-28 11:36:59,686 [wrapper] cleanup supervisor_pilot  679635 3773251
[2025-11-28 12:37:44] 2025-11-28 11:36:59,690 [wrapper] Test setup, not cleaning
[2025-11-28 12:37:44] 2025-11-28 11:36:59,693 [wrapper] apfmon messages muted
[2025-11-28 12:37:44] 2025-11-28 11:36:59,696 [wrapper] ==== wrapper stdout END ====
[2025-11-28 12:37:44] 2025-11-28 11:36:59,699 [wrapper] ==== wrapper stderr END ====
[2025-11-28 12:37:44]  *** Error codes and diagnostics ***
[2025-11-28 12:37:44]     "exeErrorCode": 0,
[2025-11-28 12:37:44]     "exeErrorDiag": "",
[2025-11-28 12:37:44]     "pilotErrorCode": 0,
[2025-11-28 12:37:44]     "pilotErrorDiag": "",
[2025-11-28 12:37:44]  *** Listing of results directory ***
[2025-11-28 12:37:44] total 1314264
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc    576529 Nov 23 16:18 pilot3.tar.gz
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc      5112 Nov 23 16:43 queuedata.json
[2025-11-28 12:37:44] -rwx------ 1 boinc boinc     36292 Nov 23 16:44 runpilot2-wrapper.sh
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc       100 Nov 27 21:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 12:37:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 21:24 run_atlas
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc       105 Nov 27 21:24 job.xml
[2025-11-28 12:37:44] -rw-r--r-- 2 boinc boinc 411529790 Nov 27 21:24 EVNT.47483658._000802.pool.root.1
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc      6688 Nov 27 21:24 init_data.xml
[2025-11-28 12:37:44] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:24 start_atlas.sh
[2025-11-28 12:37:44] drwxrwx--x 2 boinc boinc      4096 Nov 27 21:24 shared
[2025-11-28 12:37:44] -rw-r--r-- 2 boinc boinc    590102 Nov 27 21:24 input.tar.gz
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc         0 Nov 27 21:24 boinc_lockfile
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc      2785 Nov 27 21:24 pandaJob.out
[2025-11-28 12:37:44] -rw------- 1 boinc boinc    991500 Nov 27 21:24 agis_schedconf.cvmfs.json
[2025-11-28 12:37:44] drwx------ 5 boinc boinc      4096 Nov 27 21:24 pilot3
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc       532 Nov 28 12:30 boinc_task_state.xml
[2025-11-28 12:37:44] -rw------- 1 boinc boinc 911937609 Nov 28 12:35 HITS.47556137._007889.pool.root.1
[2025-11-28 12:37:44] -rw------- 1 boinc boinc      1041 Nov 28 12:36 memory_monitor_summary.json
[2025-11-28 12:37:44] -rw------- 1 boinc boinc   1516240 Nov 28 12:36 agis_ddmendpoints.agis.ALL.json
[2025-11-28 12:37:44] -rw------- 1 boinc boinc   1653091 Nov 28 12:36 log.47556137._007889.job.log.tgz.1
[2025-11-28 12:37:44] -rw------- 1 boinc boinc      8593 Nov 28 12:36 heartbeat.json
[2025-11-28 12:37:44] -rw------- 1 boinc boinc        95 Nov 28 12:36 pilot_heartbeat.json
[2025-11-28 12:37:44] -rw------- 1 boinc boinc      4836 Nov 28 12:36 pilotlog.txt
[2025-11-28 12:37:44] -rw------- 1 boinc boinc   7555704 Nov 28 12:36 log.47556137._007889.job.log.1
[2025-11-28 12:37:44] -rw------- 1 boinc boinc       353 Nov 28 12:36 output.list
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc       620 Nov 28 12:36 runtime_log
[2025-11-28 12:37:44] -rw------- 1 boinc boinc   9226240 Nov 28 12:36 result.tar.gz
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc      9223 Nov 28 12:36 runtime_log.err
[2025-11-28 12:37:44] -rw------- 1 boinc boinc       670 Nov 28 12:36 pQnLDmPRRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmK1KKDmk7KLZm.diag
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc        28 Nov 28 12:37 wrapper_checkpoint.txt
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc      8192 Nov 28 12:37 boinc_mmap_file
[2025-11-28 12:37:44] -rw-r--r-- 1 boinc boinc     21063 Nov 28 12:37 stderr.txt
[2025-11-28 12:37:44] HITS file was successfully produced:
[2025-11-28 12:37:44] -rw------- 1 boinc boinc 911937609 Nov 28 12:35 shared/HITS.pool.root.1
[2025-11-28 12:37:44]  *** Contents of shared directory: ***
[2025-11-28 12:37:44] total 1302072
[2025-11-28 12:37:44] -rw-r--r-- 2 boinc boinc 411529790 Nov 27 21:24 ATLAS.root_0
[2025-11-28 12:37:44] -rw-r--r-- 2 boinc boinc     15847 Nov 27 21:24 start_atlas.sh
[2025-11-28 12:37:44] -rw-r--r-- 2 boinc boinc    590102 Nov 27 21:24 input.tar.gz
[2025-11-28 12:37:44] -rw------- 1 boinc boinc 911937609 Nov 28 12:35 HITS.pool.root.1
[2025-11-28 12:37:44] -rw------- 1 boinc boinc   9226240 Nov 28 12:36 result.tar.gz
12:37:45 (3769226): run_atlas exited; CPU time 223214.239282
12:37:45 (3769226): called boinc_finish(0)

</stderr_txt>
]]>

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