Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:53:37 (2495495): wrapper (7.7.26015): starting
01:53:37 (2495495): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 01:53:37] Arguments: --nthreads 3
[2025-11-25 01:53:37] Threads: 3
[2025-11-25 01:53:37] Checking for CVMFS
[2025-11-25 01:53:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 01:53:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 01:53:37] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 01:53:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 01:53:38] 2.9.2.0 2391162 21 52568 153264 2 88 35083914 36864000 0 130560 0 313053 99.995 2744 21952 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 01:53:38] CVMFS is ok
[2025-11-25 01:53:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 01:53:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 01:53:38] Further information can be found at the LHC@home message board.
[2025-11-25 01:53:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 01:53:38] Checking for apptainer binary...
[2025-11-25 01:53:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 01:53:38] Running /usr/bin/apptainer --version
[2025-11-25 01:53:38] apptainer version 1.4.1-1.1
[2025-11-25 01:53:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 01:53:38] thA335
[2025-11-25 01:53:38] apptainer works
[2025-11-25 01:53:38] Set ATHENA_PROC_NUMBER=3
[2025-11-25 01:53:38] Set ATHENA_CORE_NUMBER=3
[2025-11-25 01:53:38] Starting ATLAS job with PandaID=6895378993
[2025-11-25 01:53:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 01:57:56]  *** The last 200 lines of the pilot log: ***
[2025-11-25 01:57:56] 2025-11-25 00:57:08,554 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 01:57:56] 2025-11-25 00:57:08,554 | INFO     | update_server=False
[2025-11-25 01:57:56] 2025-11-25 00:57:08,554 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 01:57:56] 2025-11-25 00:57:08,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:57:56] 2025-11-25 00:57:08,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 01:57:56] 2025-11-25 00:57:08,555 | INFO     | aborting loop
[2025-11-25 01:57:56] 2025-11-25 00:57:09,387 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 01:57:56] 2025-11-25 00:57:09,408 | INFO     | all job control threads have been joined
[2025-11-25 01:57:56] 2025-11-25 00:57:09,560 | INFO     | [job] retrieve thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,561 | INFO     | [job] queue monitor thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,561 | INFO     | [job] job monitor thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,562 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,562 | INFO     | all data control threads have been joined
[2025-11-25 01:57:56] 2025-11-25 00:57:09,591 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,601 | INFO     | [data] copytool_in thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,790 | INFO     | [payload] failed_post thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:09,997 | INFO     | all payload control threads have been joined
[2025-11-25 01:57:56] 2025-11-25 00:57:10,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:10,414 | INFO     | [job] control thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:10,447 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:10,570 | INFO     | [data] control thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:10,864 | INFO     | [payload] validate_post thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:10,976 | INFO     | [job] validate thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:10,998 | INFO     | [payload] control thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:11,394 | INFO     | [data] copytool_out thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:11,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 01:57:56] 2025-11-25 00:57:15,631 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 01:57:56] 2025-11-25 00:57:38,932 | INFO     | PID=2499221 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 01:57:56] 2025-11-25 00:57:38,932 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 01:57:56] 2025-11-25 00:57:38,932 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 01:57:56] 2025-11-25 00:57:38,932 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 01:57:56] 2025-11-25 00:57:49,707 | INFO     | [monitor] cgroup control has ended
[2025-11-25 01:57:56] 2025-11-25 00:57:51,486 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329692378944)>', '<ExcThread(monitor, started 140328896018176)>']
[2025-11-25 01:57:56] 2025-11-25 00:57:52,002 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 01:57:56] 2025-11-25 00:57:52,002 | INFO     | [monitor] control thread has ended
[2025-11-25 01:57:56] 2025-11-25 00:57:56,512 | INFO     | all workflow threads have been joined
[2025-11-25 01:57:56] 2025-11-25 00:57:56,513 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 01:57:56] 2025-11-25 00:57:56,513 | INFO     | traces error code: 0
[2025-11-25 01:57:56] 2025-11-25 00:57:56,514 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 01:57:56] 2025-11-25 00:57:56,559 [wrapper] ==== pilot stdout END ====
[2025-11-25 01:57:56] 2025-11-25 00:57:56,563 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 01:57:56] 2025-11-25 00:57:56,566 [wrapper] pilotpid: 2499221
[2025-11-25 01:57:56] 2025-11-25 00:57:56,569 [wrapper] Pilot exit status: 0
[2025-11-25 01:57:56] 2025-11-25 00:57:56,576 [wrapper] pandaids: 6895378993
[2025-11-25 01:57:56] 2025-11-25 00:57:56,592 [wrapper] cleanup supervisor_pilot 2499227 2499222
[2025-11-25 01:57:56] 2025-11-25 00:57:56,595 [wrapper] Test setup, not cleaning
[2025-11-25 01:57:56] 2025-11-25 00:57:56,598 [wrapper] apfmon messages muted
[2025-11-25 01:57:56] 2025-11-25 00:57:56,600 [wrapper] ==== wrapper stdout END ====
[2025-11-25 01:57:56] 2025-11-25 00:57:56,602 [wrapper] ==== wrapper stderr END ====
[2025-11-25 01:57:56]  *** Error codes and diagnostics ***
[2025-11-25 01:57:56]     "exeErrorCode": 65,
[2025-11-25 01:57:56]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 01:57:56]     "pilotErrorCode": 1305,
[2025-11-25 01:57:56]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 01:57:56]  *** Listing of results directory ***
[2025-11-25 01:57:56] total 404672
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc    576529 Nov 24 02:13 pilot3.tar.gz
[2025-11-25 01:57:56] -rwx------ 1 boinc boinc     36292 Nov 24 02:59 runpilot2-wrapper.sh
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc      5112 Nov 24 02:59 queuedata.json
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc       100 Nov 25 01:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 01:57:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 01:53 run_atlas
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc       105 Nov 25 01:53 job.xml
[2025-11-25 01:57:56] -rw-r--r-- 2 boinc boinc 410194389 Nov 25 01:53 EVNT.47483658._000973.pool.root.1
[2025-11-25 01:57:56] -rw-r--r-- 2 boinc boinc    590099 Nov 25 01:53 input.tar.gz
[2025-11-25 01:57:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 01:53 start_atlas.sh
[2025-11-25 01:57:56] drwxrwx--x 2 boinc boinc      4096 Nov 25 01:53 shared
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 01:53 boinc_setup_complete
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc      6196 Nov 25 01:53 init_data.xml
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc         0 Nov 25 01:53 boinc_lockfile
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc      2785 Nov 25 01:53 pandaJob.out
[2025-11-25 01:57:56] -rw------- 1 boinc boinc    991801 Nov 25 01:53 agis_schedconf.cvmfs.json
[2025-11-25 01:57:56] -rw------- 1 boinc boinc   1516227 Nov 25 01:53 agis_ddmendpoints.agis.ALL.json
[2025-11-25 01:57:56] drwx------ 5 boinc boinc      4096 Nov 25 01:53 pilot3
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc       523 Nov 25 01:54 boinc_task_state.xml
[2025-11-25 01:57:56] -rw------- 1 boinc boinc       956 Nov 25 01:54 memory_monitor_summary.json
[2025-11-25 01:57:56] -rw------- 1 boinc boinc     54312 Nov 25 01:55 log.47556137._009595.job.log.tgz.1
[2025-11-25 01:57:56] -rw------- 1 boinc boinc        95 Nov 25 01:56 pilot_heartbeat.json
[2025-11-25 01:57:56] -rw------- 1 boinc boinc      8403 Nov 25 01:57 heartbeat.json
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc      8192 Nov 25 01:57 boinc_mmap_file
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc        23 Nov 25 01:57 wrapper_checkpoint.txt
[2025-11-25 01:57:56] -rw------- 1 boinc boinc      4752 Nov 25 01:57 pilotlog.txt
[2025-11-25 01:57:56] -rw------- 1 boinc boinc     93758 Nov 25 01:57 log.47556137._009595.job.log.1
[2025-11-25 01:57:56] -rw------- 1 boinc boinc       186 Nov 25 01:57 output.list
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc       620 Nov 25 01:57 runtime_log
[2025-11-25 01:57:56] -rw------- 1 boinc boinc    163840 Nov 25 01:57 result.tar.gz
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc      8744 Nov 25 01:57 runtime_log.err
[2025-11-25 01:57:56] -rw------- 1 boinc boinc       649 Nov 25 01:57 9t1NDmq2ah8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfKLKDmQFirpm.diag
[2025-11-25 01:57:56] -rw-r--r-- 1 boinc boinc      7890 Nov 25 01:57 stderr.txt
[2025-11-25 01:57:56] No HITS result produced
[2025-11-25 01:57:56]  *** Contents of shared directory: ***
[2025-11-25 01:57:56] total 401344
[2025-11-25 01:57:56] -rw-r--r-- 2 boinc boinc 410194389 Nov 25 01:53 ATLAS.root_0
[2025-11-25 01:57:56] -rw-r--r-- 2 boinc boinc    590099 Nov 25 01:53 input.tar.gz
[2025-11-25 01:57:56] -rw-r--r-- 2 boinc boinc     15847 Nov 25 01:53 start_atlas.sh
[2025-11-25 01:57:56] -rw------- 1 boinc boinc    163840 Nov 25 01:57 result.tar.gz
01:57:58 (2495495): run_atlas exited; CPU time 32.117180
01:57:58 (2495495): called boinc_finish(0)

</stderr_txt>
]]>

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