Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:25:28 (2641134): wrapper (7.7.26015): starting
02:25:28 (2641134): wrapper: running run_atlas (--nthreads 3)
[2025-11-25 02:25:28] Arguments: --nthreads 3
[2025-11-25 02:25:28] Threads: 3
[2025-11-25 02:25:28] Checking for CVMFS
[2025-11-25 02:25:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 02:25:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 02:25:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 02:25:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 02:25:29] 2.9.2.0 2391162 53 57032 153265 2 88 35087067 36864000 0 130560 0 751340 99.998 4041 10127 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-25 02:25:29] CVMFS is ok
[2025-11-25 02:25:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 02:25:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 02:25:29] Further information can be found at the LHC@home message board.
[2025-11-25 02:25:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 02:25:29] Checking for apptainer binary...
[2025-11-25 02:25:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 02:25:29] Running /usr/bin/apptainer --version
[2025-11-25 02:25:29] apptainer version 1.4.1-1.1
[2025-11-25 02:25:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 02:25:29] thA335
[2025-11-25 02:25:29] apptainer works
[2025-11-25 02:25:29] Set ATHENA_PROC_NUMBER=3
[2025-11-25 02:25:29] Set ATHENA_CORE_NUMBER=3
[2025-11-25 02:25:29] Starting ATLAS job with PandaID=6895354728
[2025-11-25 02:25:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 02:29:42]  *** The last 200 lines of the pilot log: ***
[2025-11-25 02:29:42] 2025-11-25 01:28:55,212 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 02:29:42] 2025-11-25 01:28:55,212 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:29:42] 2025-11-25 01:28:55,212 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 02:29:42] 2025-11-25 01:28:55,212 | INFO     | aborting loop
[2025-11-25 02:29:42] 2025-11-25 01:28:55,564 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 02:29:42] 2025-11-25 01:28:55,690 | INFO     | all job control threads have been joined
[2025-11-25 02:29:42] 2025-11-25 01:28:55,815 | INFO     | all data control threads have been joined
[2025-11-25 02:29:42] 2025-11-25 01:28:56,217 | INFO     | [job] retrieve thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,218 | INFO     | [job] queue monitor thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,219 | INFO     | [job] job monitor thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,226 | INFO     | all payload control threads have been joined
[2025-11-25 02:29:42] 2025-11-25 01:28:56,412 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,449 | INFO     | [data] copytool_in thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,527 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,696 | INFO     | [job] control thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:56,821 | INFO     | [data] control thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,109 | INFO     | [payload] validate_post thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,171 | INFO     | [job] validate thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,232 | INFO     | [payload] control thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,270 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,323 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,570 | INFO     | [data] copytool_out thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,644 | INFO     | [payload] failed_post thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:28:57,870 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 02:29:42] 2025-11-25 01:29:01,878 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 02:29:42] 2025-11-25 01:29:24,820 | INFO     | PID=2644853 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 02:29:42] 2025-11-25 01:29:24,820 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 02:29:42] 2025-11-25 01:29:24,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 02:29:42] 2025-11-25 01:29:24,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 02:29:42] 2025-11-25 01:29:35,935 | INFO     | [monitor] cgroup control has ended
[2025-11-25 02:29:42] 2025-11-25 01:29:37,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043862759232)>', '<ExcThread(monitor, started 140042626389760)>']
[2025-11-25 02:29:42] 2025-11-25 01:29:37,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 02:29:42] 2025-11-25 01:29:37,887 | INFO     | [monitor] control thread has ended
[2025-11-25 02:29:42] 2025-11-25 01:29:42,751 | INFO     | all workflow threads have been joined
[2025-11-25 02:29:42] 2025-11-25 01:29:42,751 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 02:29:42] 2025-11-25 01:29:42,752 | INFO     | traces error code: 0
[2025-11-25 02:29:42] 2025-11-25 01:29:42,752 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 02:29:42] 2025-11-25 01:29:42,798 [wrapper] ==== pilot stdout END ====
[2025-11-25 02:29:42] 2025-11-25 01:29:42,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 02:29:42] 2025-11-25 01:29:42,805 [wrapper] pilotpid: 2644853
[2025-11-25 02:29:42] 2025-11-25 01:29:42,807 [wrapper] Pilot exit status: 0
[2025-11-25 02:29:42] 2025-11-25 01:29:42,815 [wrapper] pandaids: 6895354728
[2025-11-25 02:29:42] 2025-11-25 01:29:42,832 [wrapper] cleanup supervisor_pilot 2644859 2644854
[2025-11-25 02:29:42] 2025-11-25 01:29:42,835 [wrapper] Test setup, not cleaning
[2025-11-25 02:29:42] 2025-11-25 01:29:42,837 [wrapper] apfmon messages muted
[2025-11-25 02:29:42] 2025-11-25 01:29:42,840 [wrapper] ==== wrapper stdout END ====
[2025-11-25 02:29:42] 2025-11-25 01:29:42,843 [wrapper] ==== wrapper stderr END ====
[2025-11-25 02:29:42]  *** Error codes and diagnostics ***
[2025-11-25 02:29:42]     "exeErrorCode": 65,
[2025-11-25 02:29:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 02:29:42]     "pilotErrorCode": 1305,
[2025-11-25 02:29:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-25 02:29:42]  *** Listing of results directory ***
[2025-11-25 02:29:42] total 404560
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc    576529 Nov 23 06:21 pilot3.tar.gz
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc      5112 Nov 23 06:27 queuedata.json
[2025-11-25 02:29:42] -rwx------ 1 boinc boinc     36292 Nov 23 06:28 runpilot2-wrapper.sh
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc       100 Nov 25 02:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 02:29:42] -rwxr-xr-x 1 boinc boinc      7986 Nov 25 02:25 run_atlas
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc       105 Nov 25 02:25 job.xml
[2025-11-25 02:29:42] -rw-r--r-- 2 boinc boinc 410068456 Nov 25 02:25 EVNT.47483658._000629.pool.root.1
[2025-11-25 02:29:42] -rw-r--r-- 2 boinc boinc    590100 Nov 25 02:25 input.tar.gz
[2025-11-25 02:29:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:25 start_atlas.sh
[2025-11-25 02:29:42] drwxrwx--x 2 boinc boinc      4096 Nov 25 02:25 shared
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:25 boinc_setup_complete
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc      6196 Nov 25 02:25 init_data.xml
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc         0 Nov 25 02:25 boinc_lockfile
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc      2786 Nov 25 02:25 pandaJob.out
[2025-11-25 02:29:42] -rw------- 1 boinc boinc    991801 Nov 25 02:25 agis_schedconf.cvmfs.json
[2025-11-25 02:29:42] -rw------- 1 boinc boinc   1516227 Nov 25 02:25 agis_ddmendpoints.agis.ALL.json
[2025-11-25 02:29:42] drwx------ 5 boinc boinc      4096 Nov 25 02:25 pilot3
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc       522 Nov 25 02:26 boinc_task_state.xml
[2025-11-25 02:29:42] -rw------- 1 boinc boinc       946 Nov 25 02:26 memory_monitor_summary.json
[2025-11-25 02:29:42] -rw------- 1 boinc boinc     55727 Nov 25 02:26 log.47556137._006249.job.log.tgz.1
[2025-11-25 02:29:42] -rw------- 1 boinc boinc        95 Nov 25 02:28 pilot_heartbeat.json
[2025-11-25 02:29:42] -rw------- 1 boinc boinc      8400 Nov 25 02:28 heartbeat.json
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc      8192 Nov 25 02:29 boinc_mmap_file
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc        22 Nov 25 02:29 wrapper_checkpoint.txt
[2025-11-25 02:29:42] -rw------- 1 boinc boinc      4752 Nov 25 02:29 pilotlog.txt
[2025-11-25 02:29:42] -rw------- 1 boinc boinc     93904 Nov 25 02:29 log.47556137._006249.job.log.1
[2025-11-25 02:29:42] -rw------- 1 boinc boinc       186 Nov 25 02:29 output.list
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc       620 Nov 25 02:29 runtime_log
[2025-11-25 02:29:42] -rw------- 1 boinc boinc    174080 Nov 25 02:29 result.tar.gz
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc      8744 Nov 25 02:29 runtime_log.err
[2025-11-25 02:29:42] -rw------- 1 boinc boinc       649 Nov 25 02:29 L6EODmepHh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmBfKKDmfhUlfn.diag
[2025-11-25 02:29:42] -rw-r--r-- 1 boinc boinc      7708 Nov 25 02:29 stderr.txt
[2025-11-25 02:29:42] No HITS result produced
[2025-11-25 02:29:42]  *** Contents of shared directory: ***
[2025-11-25 02:29:42] total 401232
[2025-11-25 02:29:42] -rw-r--r-- 2 boinc boinc 410068456 Nov 25 02:25 ATLAS.root_0
[2025-11-25 02:29:42] -rw-r--r-- 2 boinc boinc    590100 Nov 25 02:25 input.tar.gz
[2025-11-25 02:29:42] -rw-r--r-- 2 boinc boinc     15847 Nov 25 02:25 start_atlas.sh
[2025-11-25 02:29:42] -rw------- 1 boinc boinc    174080 Nov 25 02:29 result.tar.gz
02:29:44 (2641134): run_atlas exited; CPU time 31.351994
02:29:44 (2641134): called boinc_finish(0)

</stderr_txt>
]]>

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