Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:27:43 (25486): wrapper (7.7.26015): starting
08:27:43 (25486): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:27:43] Arguments: --nthreads 8
[2025-11-27 08:27:43] Threads: 8
[2025-11-27 08:27:43] Checking for CVMFS
[2025-11-27 08:27:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:27:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:27:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:27:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:27:46] 2.11.2.0 29171 286489 140036 153352 1 84 16547841 25165825 1294 130560 10 145697516 99.877 82332632 3542 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 08:27:46] CVMFS is ok
[2025-11-27 08:27:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:27:46] Checking for apptainer binary...
[2025-11-27 08:27:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:27:46] Running /usr/bin/apptainer --version
[2025-11-27 08:27:47] apptainer version 1.3.2-1.el7
[2025-11-27 08:27:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:28:05] cg-vwn473.simple-grid.lan
[2025-11-27 08:28:05] apptainer works
[2025-11-27 08:28:05] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:28:05] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:28:05] Starting ATLAS job with PandaID=6895379001
[2025-11-27 08:28:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:51:11]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:51:11] 2025-11-28 04:50:05,477 | INFO     | monitor loop #5197: job 0:6895379001 is in state 'finished'
[2025-11-28 05:51:11] 2025-11-28 04:50:05,477 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:51:11] 2025-11-28 04:50:06,993 | INFO     | time since job start (76698s) is within the limit (172800.0s)
[2025-11-28 05:51:11] 2025-11-28 04:50:07,982 | INFO     | monitor loop #5198: job 0:6895379001 is in state 'finished'
[2025-11-28 05:51:11] 2025-11-28 04:50:07,982 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:51:11] 2025-11-28 04:50:09,004 | INFO     | time since job start (76701s) is within the limit (172800.0s)
[2025-11-28 05:51:11] 2025-11-28 04:50:10,495 | INFO     | monitor loop #5199: job 0:6895379001 is in state 'finished'
[2025-11-28 05:51:11] 2025-11-28 04:50:10,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:51:11] 2025-11-28 04:50:11,013 | INFO     | time since job start (76703s) is within the limit (172800.0s)
[2025-11-28 05:51:11] 2025-11-28 04:50:13,007 | INFO     | monitor loop #5200: job 0:6895379001 is in state 'finished'
[2025-11-28 05:51:11] 2025-11-28 04:50:13,007 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:51:11] 2025-11-28 04:50:13,029 | INFO     | time since job start (76705s) is within the limit (172800.0s)
[2025-11-28 05:51:11] 2025-11-28 04:50:15,036 | INFO     | time since job start (76707s) is within the limit (172800.0s)
[2025-11-28 05:51:11] 2025-11-28 04:50:15,512 | INFO     | monitor loop #5201: job 0:6895379001 is in state 'finished'
[2025-11-28 05:51:11] 2025-11-28 04:50:15,512 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,561 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 05:51:11] 2025-11-28 04:50:16,562 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-28 05:51:11] 2025-11-28 04:50:16,563 | INFO     | using path: /var/lib/boinc/slots/18/PanDA_Pilot-6895379001/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,564 | INFO     | extracted standard info from prmon json
[2025-11-28 05:51:11] 2025-11-28 04:50:16,564 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:51:11] 2025-11-28 04:50:16,564 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:51:11] 2025-11-28 04:50:16,584 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:51:11] 2025-11-28 04:50:16,586 | INFO     | sum of square deviations: 602728867546.9199
[2025-11-28 05:51:11] 2025-11-28 04:50:16,627 | INFO     | sum of deviations: 2912931866867.319
[2025-11-28 05:51:11] 2025-11-28 04:50:16,627 | INFO     | mean x: 1764267249.5496795
[2025-11-28 05:51:11] 2025-11-28 04:50:16,628 | INFO     | mean y: 2836030.8012820515
[2025-11-28 05:51:11] 2025-11-28 04:50:16,628 | INFO     | intersect: -8523701471.541848
[2025-11-28 05:51:11] 2025-11-28 04:50:16,629 | INFO     | chi2: 20.454985164500627
[2025-11-28 05:51:11] 2025-11-28 04:50:16,631 | INFO     | sum of square deviations: 595513913201.3893
[2025-11-28 05:51:11] 2025-11-28 04:50:16,677 | INFO     | sum of deviations: 3331322628175.9375
[2025-11-28 05:51:11] 2025-11-28 04:50:16,678 | INFO     | mean x: 1764267097.053902
[2025-11-28 05:51:11] 2025-11-28 04:50:16,678 | INFO     | mean y: 2844873.403861625
[2025-11-28 05:51:11] 2025-11-28 04:50:16,678 | INFO     | intersect: -9866517994.990368
[2025-11-28 05:51:11] 2025-11-28 04:50:16,679 | INFO     | chi2: 17.199373455959947
[2025-11-28 05:51:11] 2025-11-28 04:50:16,679 | INFO     | current chi2=17.199373455959947 (change=15.915981763657078 %)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,679 | INFO     | right removable region: 1242
[2025-11-28 05:51:11] 2025-11-28 04:50:16,681 | INFO     | sum of square deviations: 595513114101.3885
[2025-11-28 05:51:11] 2025-11-28 04:50:16,723 | INFO     | sum of deviations: 2379557657224.485
[2025-11-28 05:51:11] 2025-11-28 04:50:16,723 | INFO     | mean x: 1764267402.053902
[2025-11-28 05:51:11] 2025-11-28 04:50:16,723 | INFO     | mean y: 2847303.291230893
[2025-11-28 05:51:11] 2025-11-28 04:50:16,724 | INFO     | intersect: -7046831211.822299
[2025-11-28 05:51:11] 2025-11-28 04:50:16,725 | INFO     | chi2: 15.499158481732364
[2025-11-28 05:51:11] 2025-11-28 04:50:16,725 | INFO     | current chi2=15.499158481732364 (change=24.227965177745713 %)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,725 | INFO     | left removable region: 10
[2025-11-28 05:51:11] 2025-11-28 04:50:16,727 | INFO     | sum of square deviations: 579842596925.0631
[2025-11-28 05:51:11] 2025-11-28 04:50:16,764 | INFO     | sum of deviations: 2430259882783.0415
[2025-11-28 05:51:11] 2025-11-28 04:50:16,764 | INFO     | mean x: 1764267371.5633116
[2025-11-28 05:51:11] 2025-11-28 04:50:16,764 | INFO     | mean y: 2867990.461038961
[2025-11-28 05:51:11] 2025-11-28 04:50:16,764 | INFO     | intersect: -7391601195.402373
[2025-11-28 05:51:11] 2025-11-28 04:50:16,766 | INFO     | chi2: 7.9054688788190015
[2025-11-28 05:51:11] 2025-11-28 04:50:16,766 | INFO     | current memory leak: 4.19 B/s (using 1232 data points, chi2=7.91)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | could have reported an average CPU frequency of 2249 MHz (43 samples)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | ..............................
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . Timing measurements:
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . get job = 0 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . initial setup = 12 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . payload setup = 152 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . stage-in = 0 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . payload execution = 76265 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . stage-out = 4 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,767 | INFO     | . log creation = 1 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,768 | INFO     | ..............................
[2025-11-28 05:51:11] 2025-11-28 04:50:16,874 | INFO     | 
[2025-11-28 05:51:11] 2025-11-28 04:50:16,874 | INFO     | job summary report
[2025-11-28 05:51:11] 2025-11-28 04:50:16,874 | INFO     | --------------------------------------------------
[2025-11-28 05:51:11] 2025-11-28 04:50:16,874 | INFO     | PanDA job id: 6895379001
[2025-11-28 05:51:11] 2025-11-28 04:50:16,874 | INFO     | task id: 47556137
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | errors: (none)
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | pilot state: finished 
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | transexitcode: 0
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | exeerrorcode: 0
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | exeerrordiag: 
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | exitcode: 0
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | exitmsg: OK
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | cpuconsumptiontime: 287135 s
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | nevents: 1000
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | neventsw: 0
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | pid: 3505
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | pgrp: 3505
[2025-11-28 05:51:11] 2025-11-28 04:50:16,875 | INFO     | corecount: 8
[2025-11-28 05:51:11] 2025-11-28 04:50:16,876 | INFO     | event service: False
[2025-11-28 05:51:11] 2025-11-28 04:50:16,876 | INFO     | sizes: {0: 2283486, 1: 2284172, 2: 2284371, 13: 2284371, 24: 2284427, 35: 2284455, 45: 2284611, 56: 2284639, 67: 2284667, 77: 2284695, 88: 2284751, 98: 2285321, 99
[2025-11-28 05:51:11] 2025-11-28 04:50:16,876 | INFO     | --------------------------------------------------
[2025-11-28 05:51:11] 2025-11-28 04:50:16,876 | INFO     | 
[2025-11-28 05:51:11] 2025-11-28 04:50:16,876 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-11-28 05:51:11] 2025-11-28 04:50:17,043 | INFO     | time since job start (76709s) is within the limit (172800.0s)
[2025-11-28 05:51:11] 2025-11-28 04:50:17,202 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | job 6895379001 has completed (purged errors)
[2025-11-28 05:51:11] 2025-11-28 04:50:17,204 | INFO     | overall cleanup function is called
[2025-11-28 05:51:11] 2025-11-28 04:50:18,223 | INFO     | --- collectZombieJob: --- 10, [3505]
[2025-11-28 05:51:11] 2025-11-28 04:50:18,223 | INFO     | zombie collector waiting for pid 3505
[2025-11-28 05:51:11] 2025-11-28 04:50:18,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:51:11] 2025-11-28 04:50:18,224 | INFO     | collected zombie processes
[2025-11-28 05:51:11] 2025-11-28 04:50:18,224 | INFO     | will attempt to kill all subprocesses of pid=3505
[2025-11-28 05:51:11] 2025-11-28 04:50:18,305 | INFO     | process IDs to be killed: [3505] (in reverse order)
[2025-11-28 05:51:11] 2025-11-28 04:50:18,871 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:51:11] 2025-11-28 04:50:18,871 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:51:11] 2025-11-28 04:50:18,874 | INFO     | did not find any defunct processes belonging to 3505
[2025-11-28 05:51:11] 2025-11-28 04:50:18,885 | INFO     | did not find any defunct processes belonging to 3505
[2025-11-28 05:51:11] 2025-11-28 04:50:18,951 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:51:11] 2025-11-28 04:50:18,952 | INFO     | ready for new job
[2025-11-28 05:51:11] 2025-11-28 04:50:18,952 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:51:11] 2025-11-28 04:50:18,956 | INFO     | ***************************************
[2025-11-28 05:51:11] 2025-11-28 04:50:18,956 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:51:11] 2025-11-28 04:50:18,956 | INFO     | ***************************************
[2025-11-28 05:51:11] 2025-11-28 04:50:18,956 | INFO     | 
[2025-11-28 05:51:11] 2025-11-28 04:50:18,957 | INFO     | pilot is running in a VM
[2025-11-28 05:51:11] 2025-11-28 04:50:18,957 | INFO     | architecture information:
[2025-11-28 05:51:11] 2025-11-28 04:50:18,971 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:51:11] 2025-11-28 04:50:19,156 | INFO     | cat /etc/os-release:
[2025-11-28 05:51:11] NAME="CentOS Linux"
[2025-11-28 05:51:11] VERSION="7 (Core)"
[2025-11-28 05:51:11] ID="centos"
[2025-11-28 05:51:11] ID_LIKE="rhel fedora"
[2025-11-28 05:51:11] VERSION_ID="7"
[2025-11-28 05:51:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:51:11] ANSI_COLOR="0;31"
[2025-11-28 05:51:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:51:11] HOME_URL="https://www.centos.org/"
[2025-11-28 05:51:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:51:11] 
[2025-11-28 05:51:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:51:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:51:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:51:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:51:11] 
[2025-11-28 05:51:11] 2025-11-28 04:50:19,157 | INFO     | ***************************************
[2025-11-28 05:51:11] 2025-11-28 04:50:19,660 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-11-28 05:51:11] 2025-11-28 04:50:19,817 | INFO     | sufficient remaining disk space (495708012544 B)
[2025-11-28 05:51:11] 2025-11-28 04:50:19,818 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:51:11] 2025-11-28 04:50:19,818 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:51:11] 2025-11-28 04:50:19,818 | INFO     | update_server=False
[2025-11-28 05:51:11] 2025-11-28 04:50:19,818 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:51:11] 2025-11-28 04:50:19,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:51:11] 2025-11-28 04:50:19,821 | INFO     | aborting loop
[2025-11-28 05:51:11] 2025-11-28 04:50:19,824 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:51:11] 2025-11-28 04:50:19,825 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:51:11] 2025-11-28 04:50:19,885 | INFO     | all job control threads have been joined
[2025-11-28 05:51:11] 2025-11-28 04:50:19,959 | INFO     | all data control threads have been joined
[2025-11-28 05:51:11] 2025-11-28 04:50:20,497 | INFO     | all payload control threads have been joined
[2025-11-28 05:51:11] 2025-11-28 04:50:20,827 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:20,828 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:20,891 | INFO     | [job] control thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:20,962 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:20,965 | INFO     | [data] control thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,403 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,503 | INFO     | [payload] control thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,527 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,536 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,776 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,779 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,831 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:21,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:51:11] 2025-11-28 04:50:22,166 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:22,317 | INFO     | [job] validate thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:22,904 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:23,834 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:51:11] 2025-11-28 04:50:50,210 | INFO     | PID=29307 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:51:11] 2025-11-28 04:50:50,210 | INFO     | .. there are 9 such processes running
[2025-11-28 05:51:11] 2025-11-28 04:50:50,210 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:51:11] 2025-11-28 04:50:50,210 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:51:11] 2025-11-28 04:50:50,210 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:51:11] 2025-11-28 04:51:00,891 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:51:11] 2025-11-28 04:51:01,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139927604680512)>', '<ExcThread(monitor, started 139926880384768)>']
[2025-11-28 05:51:11] 2025-11-28 04:51:01,277 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:51:11] 2025-11-28 04:51:01,277 | INFO     | [monitor] control thread has ended
[2025-11-28 05:51:11] 2025-11-28 04:51:06,292 | INFO     | all workflow threads have been joined
[2025-11-28 05:51:11] 2025-11-28 04:51:06,292 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:51:11] 2025-11-28 04:51:06,293 | INFO     | traces error code: 0
[2025-11-28 05:51:11] 2025-11-28 04:51:06,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:51:11] 2025-11-28 04:51:06,634 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:51:11] 2025-11-28 04:51:06,731 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:51:11] 2025-11-28 04:51:06,784 [wrapper] pilotpid: 29307
[2025-11-28 05:51:11] 2025-11-28 04:51:06,887 [wrapper] Pilot exit status: 0
[2025-11-28 05:51:11] 2025-11-28 04:51:07,239 [wrapper] pandaids: 6895379001
[2025-11-28 05:51:11] 2025-11-28 04:51:08,183 [wrapper] cleanup supervisor_pilot 24105 29308
[2025-11-28 05:51:11] 2025-11-28 04:51:08,286 [wrapper] Test setup, not cleaning
[2025-11-28 05:51:11] 2025-11-28 04:51:08,356 [wrapper] apfmon messages muted
[2025-11-28 05:51:11] 2025-11-28 04:51:08,479 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:51:11] 2025-11-28 04:51:08,629 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:51:11]  *** Error codes and diagnostics ***
[2025-11-28 05:51:11]     "exeErrorCode": 0,
[2025-11-28 05:51:11]     "exeErrorDiag": "",
[2025-11-28 05:51:11]     "pilotErrorCode": 0,
[2025-11-28 05:51:11]     "pilotErrorDiag": "",
[2025-11-28 05:51:11]  *** Listing of results directory ***
[2025-11-28 05:51:11] total 1336840
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc    576529 Nov 24 02:13 pilot3.tar.gz
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc      5112 Nov 24 02:59 queuedata.json
[2025-11-28 05:51:11] -rwx------. 1 boinc boinc     36292 Nov 24 03:01 runpilot2-wrapper.sh
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc       100 Nov 27 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:51:11] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 08:27 run_atlas
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc       105 Nov 27 08:27 job.xml
[2025-11-28 05:51:11] -rw-r--r--. 2 boinc boinc 410317000 Nov 27 08:27 EVNT.47483658._000974.pool.root.1
[2025-11-28 05:51:11] -rw-r--r--. 2 boinc boinc     15847 Nov 27 08:27 start_atlas.sh
[2025-11-28 05:51:11] drwxrwx--x. 2 boinc boinc        68 Nov 27 08:27 shared
[2025-11-28 05:51:11] -rw-r--r--. 2 boinc boinc    590108 Nov 27 08:27 input.tar.gz
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc      6393 Nov 27 08:27 init_data.xml
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc         0 Nov 27 08:27 boinc_lockfile
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc      2785 Nov 27 08:28 pandaJob.out
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc    991570 Nov 27 08:31 agis_schedconf.cvmfs.json
[2025-11-28 05:51:11] drwx------. 5 boinc boinc      4096 Nov 27 08:31 pilot3
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc       533 Nov 28 05:28 boinc_task_state.xml
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc 929488890 Nov 28 05:47 HITS.47556137._009603.pool.root.1
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc      1028 Nov 28 05:48 memory_monitor_summary.json
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc   1516240 Nov 28 05:48 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc   2365151 Nov 28 05:48 log.47556137._009603.job.log.tgz.1
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc      7948 Nov 28 05:50 heartbeat.json
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc        95 Nov 28 05:50 pilot_heartbeat.json
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc        29 Nov 28 05:50 wrapper_checkpoint.txt
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc      4885 Nov 28 05:51 pilotlog.txt
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc  10246513 Nov 28 05:51 log.47556137._009603.job.log.1
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc       353 Nov 28 05:51 output.list
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc       620 Nov 28 05:51 runtime_log
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc      8192 Nov 28 05:51 boinc_mmap_file
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc  12625920 Nov 28 05:51 result.tar.gz
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc      8833 Nov 28 05:51 runtime_log.err
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc       662 Nov 28 05:51 LFJLDmO4ah8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmkKLKDmugOXBo.diag
[2025-11-28 05:51:11] -rw-r--r--. 1 boinc boinc     21439 Nov 28 05:51 stderr.txt
[2025-11-28 05:51:11] HITS file was successfully produced:
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc 929488890 Nov 28 05:47 shared/HITS.pool.root.1
[2025-11-28 05:51:11]  *** Contents of shared directory: ***
[2025-11-28 05:51:11] total 1321336
[2025-11-28 05:51:11] -rw-r--r--. 2 boinc boinc 410317000 Nov 27 08:27 ATLAS.root_0
[2025-11-28 05:51:11] -rw-r--r--. 2 boinc boinc     15847 Nov 27 08:27 start_atlas.sh
[2025-11-28 05:51:11] -rw-r--r--. 2 boinc boinc    590108 Nov 27 08:27 input.tar.gz
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc 929488890 Nov 28 05:47 HITS.pool.root.1
[2025-11-28 05:51:11] -rw-------. 1 boinc boinc  12625920 Nov 28 05:51 result.tar.gz
05:51:12 (25486): run_atlas exited; CPU time 287585.700724
05:51:12 (25486): called boinc_finish(0)

</stderr_txt>
]]>

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