Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:06:51 (413512): wrapper (7.7.26015): starting
20:06:51 (413512): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 20:06:51] Arguments: --nthreads 8
[2025-11-24 20:06:51] Threads: 8
[2025-11-24 20:06:51] Checking for CVMFS
[2025-11-24 20:06:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 20:06:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 20:06:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 20:06:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 20:06:52] 2.13.3.0 4306 24851 345208 153264 2 751 21215957 32935936 26903 16776704 0 141616298 99.785 77708236 31869 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-24 20:06:52] CVMFS is ok
[2025-11-24 20:06:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 20:06:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 20:06:52] Further information can be found at the LHC@home message board.
[2025-11-24 20:06:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 20:06:52] Checking for apptainer binary...
[2025-11-24 20:06:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 20:06:52] Running /usr/bin/apptainer --version
[2025-11-24 20:06:52] apptainer version 1.4.4-1.el9
[2025-11-24 20:06:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 20:06:52] c-6-4.aglt2.org
[2025-11-24 20:06:52] apptainer works
[2025-11-24 20:06:52] Set ATHENA_PROC_NUMBER=8
[2025-11-24 20:06:52] Set ATHENA_CORE_NUMBER=8
[2025-11-24 20:06:52] Starting ATLAS job with PandaID=6895378991
[2025-11-24 20:06:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:12:51 (329696): wrapper (7.7.26015): starting
16:12:51 (329696): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 16:12:51] Arguments: --nthreads 8
[2025-11-25 16:12:51] Threads: 8
[2025-11-25 16:12:51] This job has been restarted, cleaning up previous attempt
[2025-11-25 16:12:52] Checking for CVMFS
[2025-11-25 16:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 16:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 16:12:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 16:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 16:12:52] 2.13.3.0 4306 26057 331044 153297 2 266 28695245 32935937 24449 16776704 0 146146074 99.789 79229750 31895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 16:12:52] CVMFS is ok
[2025-11-25 16:12:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 16:12:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 16:12:52] Further information can be found at the LHC@home message board.
[2025-11-25 16:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 16:12:52] Checking for apptainer binary...
[2025-11-25 16:12:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 16:12:52] Running /usr/bin/apptainer --version
[2025-11-25 16:12:52] apptainer version 1.4.4-1.el9
[2025-11-25 16:12:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 16:12:52] c-6-4.aglt2.org
[2025-11-25 16:12:52] apptainer works
[2025-11-25 16:12:52] Set ATHENA_PROC_NUMBER=8
[2025-11-25 16:12:52] Set ATHENA_CORE_NUMBER=8
[2025-11-25 16:12:52] Starting ATLAS job with PandaID=6895378991
[2025-11-25 16:12:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 11:31:15]  *** The last 200 lines of the pilot log: ***
[2025-11-26 11:31:15] 2025-11-26 16:30:41,463 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 11:31:15] 2025-11-26 16:30:41,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 11:31:15] 2025-11-26 16:30:41,488 | INFO     | fitting pss+swap vs Time
[2025-11-26 11:31:15] 2025-11-26 16:30:41,491 | INFO     | sum of square deviations: 457003103411.6032
[2025-11-26 11:31:15] 2025-11-26 16:30:41,524 | INFO     | sum of deviations: 2747509081069.0864
[2025-11-26 11:31:15] 2025-11-26 16:30:41,525 | INFO     | mean x: 1764139890.112478
[2025-11-26 11:31:15] 2025-11-26 16:30:41,525 | INFO     | mean y: 2981210.655536028
[2025-11-26 11:31:15] 2025-11-26 16:30:41,525 | INFO     | intersect: -10603052604.38133
[2025-11-26 11:31:15] 2025-11-26 16:30:41,527 | INFO     | chi2: 7.19713426217708
[2025-11-26 11:31:15] 2025-11-26 16:30:41,528 | INFO     | sum of square deviations: 451006518071.0458
[2025-11-26 11:31:15] 2025-11-26 16:30:41,559 | INFO     | sum of deviations: 3142174960397.132
[2025-11-26 11:31:15] 2025-11-26 16:30:41,560 | INFO     | mean x: 1764139737.619594
[2025-11-26 11:31:15] 2025-11-26 16:30:41,560 | INFO     | mean y: 2991249.3274492496
[2025-11-26 11:31:15] 2025-11-26 16:30:41,560 | INFO     | intersect: -12287819388.838636
[2025-11-26 11:31:15] 2025-11-26 16:30:41,561 | INFO     | chi2: 4.043108271189441
[2025-11-26 11:31:15] 2025-11-26 16:30:41,562 | INFO     | current chi2=4.043108271189441 (change=43.82335907727765 %)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,563 | INFO     | sum of square deviations: 445062631392.8722
[2025-11-26 11:31:15] 2025-11-26 16:30:41,595 | INFO     | sum of deviations: 3370693378817.604
[2025-11-26 11:31:15] 2025-11-26 16:30:41,595 | INFO     | mean x: 1764139585.126773
[2025-11-26 11:31:15] 2025-11-26 16:30:41,595 | INFO     | mean y: 2997105.0726950355
[2025-11-26 11:31:15] 2025-11-26 16:30:41,595 | INFO     | intersect: -13357759785.001455
[2025-11-26 11:31:15] 2025-11-26 16:30:41,597 | INFO     | chi2: 2.607263160937174
[2025-11-26 11:31:15] 2025-11-26 16:30:41,597 | INFO     | current chi2=2.607263160937174 (change=35.51339746412124 %)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,599 | INFO     | sum of square deviations: 439170866785.8985
[2025-11-26 11:31:15] 2025-11-26 16:30:41,630 | INFO     | sum of deviations: 3378017117410.612
[2025-11-26 11:31:15] 2025-11-26 16:30:41,630 | INFO     | mean x: 1764139432.6295636
[2025-11-26 11:31:15] 2025-11-26 16:30:41,630 | INFO     | mean y: 2997292.7827248443
[2025-11-26 11:31:15] 2025-11-26 16:30:41,631 | INFO     | intersect: -13566421017.077396
[2025-11-26 11:31:15] 2025-11-26 16:30:41,632 | INFO     | chi2: 2.548814059950544
[2025-11-26 11:31:15] 2025-11-26 16:30:41,632 | INFO     | current chi2=2.548814059950544 (change=2.2417798810005936 %)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,633 | INFO     | right removable region: 1122
[2025-11-26 11:31:15] 2025-11-26 16:30:41,634 | INFO     | sum of square deviations: 451005537195.5197
[2025-11-26 11:31:15] 2025-11-26 16:30:41,666 | INFO     | sum of deviations: 2452057808848.4434
[2025-11-26 11:31:15] 2025-11-26 16:30:41,666 | INFO     | mean x: 1764140042.6178288
[2025-11-26 11:31:15] 2025-11-26 16:30:41,666 | INFO     | mean y: 2988713.9779346865
[2025-11-26 11:31:15] 2025-11-26 16:30:41,666 | INFO     | intersect: -9588408753.783012
[2025-11-26 11:31:15] 2025-11-26 16:30:41,668 | INFO     | chi2: 5.276168206978541
[2025-11-26 11:31:15] 2025-11-26 16:30:41,668 | INFO     | current chi2=5.276168206978541 (change=26.69070751248513 %)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,673 | INFO     | sum of square deviations: 445061084569.3187
[2025-11-26 11:31:15] 2025-11-26 16:30:41,704 | INFO     | sum of deviations: 2342383857493.278
[2025-11-26 11:31:15] 2025-11-26 16:30:41,704 | INFO     | mean x: 1764140195.1179078
[2025-11-26 11:31:15] 2025-11-26 16:30:41,704 | INFO     | mean y: 2991527.253546099
[2025-11-26 11:31:15] 2025-11-26 16:30:41,705 | INFO     | intersect: -9281786806.934015
[2025-11-26 11:31:15] 2025-11-26 16:30:41,706 | INFO     | chi2: 5.160112706958675
[2025-11-26 11:31:15] 2025-11-26 16:30:41,706 | INFO     | current chi2=5.160112706958675 (change=2.1996171362839525 %)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,707 | INFO     | left removable region: 20
[2025-11-26 11:31:15] 2025-11-26 16:30:41,708 | INFO     | sum of square deviations: 414991680455.0347
[2025-11-26 11:31:15] 2025-11-26 16:30:41,740 | INFO     | sum of deviations: 2800127586452.3457
[2025-11-26 11:31:15] 2025-11-26 16:30:41,740 | INFO     | mean x: 1764140012.137931
[2025-11-26 11:31:15] 2025-11-26 16:30:41,740 | INFO     | mean y: 3012256.9319419237
[2025-11-26 11:31:15] 2025-11-26 16:30:41,740 | INFO     | intersect: -11900400141.445131
[2025-11-26 11:31:15] 2025-11-26 16:30:41,742 | INFO     | chi2: 0.40905409198168585
[2025-11-26 11:31:15] 2025-11-26 16:30:41,742 | INFO     | current memory leak: 6.75 B/s (using 1102 data points, chi2=0.41)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,744 | INFO     | could have reported an average CPU frequency of 2600 MHz (41 samples)
[2025-11-26 11:31:15] 2025-11-26 16:30:41,744 | INFO     | ..............................
[2025-11-26 11:31:15] 2025-11-26 16:30:41,744 | INFO     | . Timing measurements:
[2025-11-26 11:31:15] 2025-11-26 16:30:41,744 | INFO     | . get job = 0 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,744 | INFO     | . initial setup = 2 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,744 | INFO     | . payload setup = 5 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,745 | INFO     | . stage-in = 0 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,745 | INFO     | . payload execution = 69417 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,745 | INFO     | . stage-out = 5 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,745 | INFO     | . log creation = 1 s
[2025-11-26 11:31:15] 2025-11-26 16:30:41,745 | INFO     | ..............................
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | 
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | job summary report
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | --------------------------------------------------
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | PanDA job id: 6895378991
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | task id: 47556137
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | errors: (none)
[2025-11-26 11:31:15] 2025-11-26 16:30:42,005 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | pilot state: finished 
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | transexitcode: 0
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | exeerrorcode: 0
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | exeerrordiag: 
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | exitcode: 0
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | exitmsg: OK
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | cpuconsumptiontime: 304929 s
[2025-11-26 11:31:15] 2025-11-26 16:30:42,006 | INFO     | nevents: 1000
[2025-11-26 11:31:15] 2025-11-26 16:30:42,049 | INFO     | neventsw: 0
[2025-11-26 11:31:15] 2025-11-26 16:30:42,049 | INFO     | pid: 361272
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | pgrp: 361272
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | corecount: 8
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | event service: False
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 69423: 2342648, 69430: 2351698, 69443: 2351984}
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | --------------------------------------------------
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | 
[2025-11-26 11:31:15] 2025-11-26 16:30:42,050 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 11:31:15] 2025-11-26 16:30:42,147 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,147 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,147 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,148 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 11:31:15] 2025-11-26 16:30:42,149 | INFO     | job 6895378991 has completed (purged errors)
[2025-11-26 11:31:15] 2025-11-26 16:30:42,150 | INFO     | overall cleanup function is called
[2025-11-26 11:31:15] 2025-11-26 16:30:43,208 | INFO     | --- collectZombieJob: --- 10, [361272]
[2025-11-26 11:31:15] 2025-11-26 16:30:43,208 | INFO     | zombie collector waiting for pid 361272
[2025-11-26 11:31:15] 2025-11-26 16:30:43,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 11:31:15] 2025-11-26 16:30:43,208 | INFO     | collected zombie processes
[2025-11-26 11:31:15] 2025-11-26 16:30:43,209 | INFO     | will attempt to kill all subprocesses of pid=361272
[2025-11-26 11:31:15] 2025-11-26 16:30:44,054 | INFO     | process IDs to be killed: [361272] (in reverse order)
[2025-11-26 11:31:15] 2025-11-26 16:30:44,229 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 11:31:15] 2025-11-26 16:30:44,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 11:31:15] 2025-11-26 16:30:44,250 | INFO     | did not find any defunct processes belonging to 361272
[2025-11-26 11:31:15] 2025-11-26 16:30:44,269 | INFO     | did not find any defunct processes belonging to 361272
[2025-11-26 11:31:15] 2025-11-26 16:30:44,271 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 11:31:15] 2025-11-26 16:30:44,271 | INFO     | ready for new job
[2025-11-26 11:31:15] 2025-11-26 16:30:44,271 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 11:31:15] 2025-11-26 16:30:44,290 | INFO     | ***************************************
[2025-11-26 11:31:15] 2025-11-26 16:30:44,290 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 11:31:15] 2025-11-26 16:30:44,290 | INFO     | ***************************************
[2025-11-26 11:31:15] 2025-11-26 16:30:44,290 | INFO     | 
[2025-11-26 11:31:15] 2025-11-26 16:30:44,292 | INFO     | architecture information:
[2025-11-26 11:31:15] 2025-11-26 16:30:44,293 | INFO     | executing command: cat /etc/os-release
[2025-11-26 11:31:15] 2025-11-26 16:30:44,316 | INFO     | cat /etc/os-release:
[2025-11-26 11:31:15] NAME="CentOS Linux"
[2025-11-26 11:31:15] VERSION="7 (Core)"
[2025-11-26 11:31:15] ID="centos"
[2025-11-26 11:31:15] ID_LIKE="rhel fedora"
[2025-11-26 11:31:15] VERSION_ID="7"
[2025-11-26 11:31:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 11:31:15] ANSI_COLOR="0;31"
[2025-11-26 11:31:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 11:31:15] HOME_URL="https://www.centos.org/"
[2025-11-26 11:31:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 11:31:15] 
[2025-11-26 11:31:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 11:31:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 11:31:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 11:31:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 11:31:15] 
[2025-11-26 11:31:15] 2025-11-26 16:30:44,317 | INFO     | ***************************************
[2025-11-26 11:31:15] 2025-11-26 16:30:44,819 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 11:31:15] 2025-11-26 16:30:44,844 | INFO     | sufficient remaining disk space (72639053824 B)
[2025-11-26 11:31:15] 2025-11-26 16:30:44,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 11:31:15] 2025-11-26 16:30:44,844 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 11:31:15] 2025-11-26 16:30:44,844 | INFO     | update_server=False
[2025-11-26 11:31:15] 2025-11-26 16:30:44,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 11:31:15] 2025-11-26 16:30:44,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 11:31:15] 2025-11-26 16:30:44,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:31:15] 2025-11-26 16:30:44,875 | INFO     | aborting loop
[2025-11-26 11:31:15] 2025-11-26 16:30:44,998 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 11:31:15] 2025-11-26 16:30:45,047 | INFO     | all data control threads have been joined
[2025-11-26 11:31:15] 2025-11-26 16:30:45,244 | INFO     | all payload control threads have been joined
[2025-11-26 11:31:15] 2025-11-26 16:30:45,346 | INFO     | all job control threads have been joined
[2025-11-26 11:31:15] 2025-11-26 16:30:45,850 | INFO     | [job] retrieve thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:45,881 | INFO     | [job] job monitor thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,052 | INFO     | [data] control thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,099 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,108 | INFO     | [job] validate thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,209 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,249 | INFO     | [payload] control thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,324 | INFO     | [payload] validate_post thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,328 | INFO     | [payload] failed_post thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,351 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,354 | INFO     | [job] control thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,713 | INFO     | [data] copytool_in thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:46,883 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 11:31:15] 2025-11-26 16:30:47,005 | INFO     | [data] copytool_out thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:47,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:47,889 | INFO     | [job] queue monitor thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:30:48,859 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 11:31:15] 2025-11-26 16:31:07,416 | INFO     | [monitor] cgroup control has ended
[2025-11-26 11:31:15] 2025-11-26 16:31:09,445 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140065420625728)>', '<ExcThread(monitor, started 140065139296000)>']
[2025-11-26 11:31:15] 2025-11-26 16:31:14,470 | INFO     | all workflow threads have been joined
[2025-11-26 11:31:15] 2025-11-26 16:31:14,470 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 11:31:15] 2025-11-26 16:31:14,471 | INFO     | traces error code: 0
[2025-11-26 11:31:15] 2025-11-26 16:31:14,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 11:31:15] 2025-11-26 16:31:14,676 | INFO     | PID=340757 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 11:31:15] 2025-11-26 16:31:14,677 | INFO     | .. there are 42 such processes running
[2025-11-26 11:31:15] 2025-11-26 16:31:14,678 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 11:31:15] 2025-11-26 16:31:14,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 11:31:15] 2025-11-26 16:31:14,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 11:31:15] 2025-11-26 16:31:14,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 11:31:15] 2025-11-26 16:31:14,679 | INFO     | [monitor] control thread has ended
[2025-11-26 11:31:15] 2025-11-26 16:31:14,901 [wrapper] ==== pilot stdout END ====
[2025-11-26 11:31:15] 2025-11-26 16:31:14,905 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 11:31:15] 2025-11-26 16:31:14,908 [wrapper] pilotpid: 340757
[2025-11-26 11:31:15] 2025-11-26 16:31:14,911 [wrapper] Pilot exit status: 0
[2025-11-26 11:31:15] 2025-11-26 16:31:14,922 [wrapper] pandaids: 6895378991 6895378991
[2025-11-26 11:31:15] 2025-11-26 16:31:15,008 [wrapper] cleanup supervisor_pilot  288398 340758
[2025-11-26 11:31:15] 2025-11-26 16:31:15,012 [wrapper] Test setup, not cleaning
[2025-11-26 11:31:15] 2025-11-26 16:31:15,015 [wrapper] apfmon messages muted
[2025-11-26 11:31:15] 2025-11-26 16:31:15,018 [wrapper] ==== wrapper stdout END ====
[2025-11-26 11:31:15] 2025-11-26 16:31:15,021 [wrapper] ==== wrapper stderr END ====
[2025-11-26 11:31:15]  *** Error codes and diagnostics ***
[2025-11-26 11:31:15]     "exeErrorCode": 0,
[2025-11-26 11:31:15]     "exeErrorDiag": "",
[2025-11-26 11:31:15]     "pilotErrorCode": 0,
[2025-11-26 11:31:15]     "pilotErrorDiag": "",
[2025-11-26 11:31:15]  *** Listing of results directory ***
[2025-11-26 11:31:15] total 1739940
[2025-11-26 11:31:15] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 20:13 pilot3.tar.gz
[2025-11-26 11:31:15] -rwx------. 1 boincer umatlas     36292 Nov 23 20:59 runpilot2-wrapper.sh
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 20:59 queuedata.json
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas       100 Nov 24 20:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 11:31:15] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 20:06 run_atlas
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas       105 Nov 24 20:06 job.xml
[2025-11-26 11:31:15] -rw-r--r--. 3 boincer umatlas 410194389 Nov 24 20:06 EVNT.47483658._000973.pool.root.1
[2025-11-26 11:31:15] -rw-r--r--. 3 boincer umatlas 410194389 Nov 24 20:06 ATLAS.root_0
[2025-11-26 11:31:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:06 start_atlas.sh
[2025-11-26 11:31:15] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 20:06 shared
[2025-11-26 11:31:15] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 20:06 input.tar.gz
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas         0 Nov 24 20:06 boinc_lockfile
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 16:12 pandaJob.out
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas        57 Nov 25 16:12 setup.sh.local
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas    991893 Nov 25 16:13 agis_schedconf.cvmfs.json
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas       534 Nov 26 11:17 boinc_task_state.xml
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas      6660 Nov 26 11:28 init_data.xml
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas 934991335 Nov 26 11:29 HITS.47556137._009593.pool.root.1
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas      1068 Nov 26 11:30 memory_monitor_summary.json
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas   1516240 Nov 26 11:30 agis_ddmendpoints.agis.ALL.json
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas   2256761 Nov 26 11:30 log.47556137._009593.job.log.tgz.1
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas      8641 Nov 26 11:30 heartbeat.json
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas        30 Nov 26 11:31 wrapper_checkpoint.txt
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas        96 Nov 26 11:31 pilot_heartbeat.json
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas       822 Nov 26 11:31 pilotlog.txt
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas   8940458 Nov 26 11:31 log.47556137._009593.job.log.1
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas       353 Nov 26 11:31 output.list
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas       620 Nov 26 11:31 runtime_log
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas  11212800 Nov 26 11:31 result.tar.gz
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas      9413 Nov 26 11:31 runtime_log.err
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas       787 Nov 26 11:31 91xNDmq2ah8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmdKLKDm3M69km.diag
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 11:31 boinc_mmap_file
[2025-11-26 11:31:15] -rw-r--r--. 1 boincer umatlas     23242 Nov 26 11:31 stderr.txt
[2025-11-26 11:31:15] HITS file was successfully produced:
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas 934991335 Nov 26 11:29 shared/HITS.pool.root.1
[2025-11-26 11:31:15]  *** Contents of shared directory: ***
[2025-11-26 11:31:15] total 1325220
[2025-11-26 11:31:15] -rw-r--r--. 3 boincer umatlas 410194389 Nov 24 20:06 ATLAS.root_0
[2025-11-26 11:31:15] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 20:06 start_atlas.sh
[2025-11-26 11:31:15] -rw-r--r--. 2 boincer umatlas    590099 Nov 24 20:06 input.tar.gz
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas 934991335 Nov 26 11:29 HITS.pool.root.1
[2025-11-26 11:31:15] -rw-------. 1 boincer umatlas  11212800 Nov 26 11:31 result.tar.gz
11:31:37 (329696): run_atlas exited; CPU time 307347.273227
11:31:37 (329696): called boinc_finish(0)

</stderr_txt>
]]>

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