Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:23:02 (3278): wrapper (7.7.26015): starting
19:23:02 (3278): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 19:23:02] Arguments: --nthreads 8
[2025-11-24 19:23:02] Threads: 8
[2025-11-24 19:23:02] Checking for CVMFS
[2025-11-24 19:23:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 19:23:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 19:23:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 19:23:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 19:23:02] 2.11.2.0 5808 168206 107612 153264 1 96 15357477 18432000 2827 130560 0 111160253 99.944 8935906 6927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-11-24 19:23:02] CVMFS is ok
[2025-11-24 19:23:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 19:23:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 19:23:02] Further information can be found at the LHC@home message board.
[2025-11-24 19:23:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 19:23:02] Checking for apptainer binary...
[2025-11-24 19:23:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 19:23:02] Running /usr/bin/apptainer --version
[2025-11-24 19:23:02] apptainer version 1.3.2-1.el7
[2025-11-24 19:23:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 19:23:03] c-9-34.aglt2.org
[2025-11-24 19:23:03] apptainer works
[2025-11-24 19:23:03] Set ATHENA_PROC_NUMBER=8
[2025-11-24 19:23:03] Set ATHENA_CORE_NUMBER=8
[2025-11-24 19:23:03] Starting ATLAS job with PandaID=6895651777
[2025-11-24 19:23:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 12:27:02]  *** The last 200 lines of the pilot log: ***
[2025-11-25 12:27:02] 2025-11-25 17:26:15,622 | INFO     | monitor loop #4250: job 0:6895651777 is in state 'finished'
[2025-11-25 12:27:02] 2025-11-25 17:26:15,622 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-25 12:27:02] 2025-11-25 17:26:16,743 | INFO     | time since job start (61382s) is within the limit (172800.0s)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,021 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-25 12:27:02] 2025-11-25 17:26:17,026 | INFO     | found 16 cores (8 cores per socket, 2 sockets) HT, CPU MHz: 2999.956531250001
[2025-11-25 12:27:02] 2025-11-25 17:26:17,029 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6895651777/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,030 | INFO     | extracted standard info from prmon json
[2025-11-25 12:27:02] 2025-11-25 17:26:17,030 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 12:27:02] 2025-11-25 17:26:17,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 12:27:02] 2025-11-25 17:26:17,043 | INFO     | fitting pss+swap vs Time
[2025-11-25 12:27:02] 2025-11-25 17:26:17,044 | INFO     | sum of square deviations: 315697606212.7683
[2025-11-25 12:27:02] 2025-11-25 17:26:17,059 | INFO     | sum of deviations: 1613254706751.4048
[2025-11-25 12:27:02] 2025-11-25 17:26:17,060 | INFO     | mean x: 1764060873.0904572
[2025-11-25 12:27:02] 2025-11-25 17:26:17,060 | INFO     | mean y: 2866950.292246521
[2025-11-25 12:27:02] 2025-11-25 17:26:17,060 | INFO     | intersect: -9011707283.099808
[2025-11-25 12:27:02] 2025-11-25 17:26:17,061 | INFO     | chi2: 4.258918444958413
[2025-11-25 12:27:02] 2025-11-25 17:26:17,061 | INFO     | sum of square deviations: 311013913513.5178
[2025-11-25 12:27:02] 2025-11-25 17:26:17,077 | INFO     | sum of deviations: 1877998751183.7615
[2025-11-25 12:27:02] 2025-11-25 17:26:17,077 | INFO     | mean x: 1764060720.5934067
[2025-11-25 12:27:02] 2025-11-25 17:26:17,077 | INFO     | mean y: 2875564.933066933
[2025-11-25 12:27:02] 2025-11-25 17:26:17,077 | INFO     | intersect: -10649071779.99738
[2025-11-25 12:27:02] 2025-11-25 17:26:17,078 | INFO     | chi2: 2.149356320755323
[2025-11-25 12:27:02] 2025-11-25 17:26:17,078 | INFO     | current chi2=2.149356320755323 (change=49.532813353125604 %)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,079 | INFO     | sum of square deviations: 306376779826.74756
[2025-11-25 12:27:02] 2025-11-25 17:26:17,094 | INFO     | sum of deviations: 1951404662019.9917
[2025-11-25 12:27:02] 2025-11-25 17:26:17,094 | INFO     | mean x: 1764060568.0963855
[2025-11-25 12:27:02] 2025-11-25 17:26:17,094 | INFO     | mean y: 2877975.7188755022
[2025-11-25 12:27:02] 2025-11-25 17:26:17,094 | INFO     | intersect: -11232947463.191853
[2025-11-25 12:27:02] 2025-11-25 17:26:17,095 | INFO     | chi2: 1.8810931958614399
[2025-11-25 12:27:02] 2025-11-25 17:26:17,095 | INFO     | current chi2=1.8810931958614399 (change=12.481091306424725 %)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,095 | INFO     | right removable region: 995
[2025-11-25 12:27:02] 2025-11-25 17:26:17,096 | INFO     | sum of square deviations: 311013551173.5186
[2025-11-25 12:27:02] 2025-11-25 17:26:17,111 | INFO     | sum of deviations: 1387740602208.6047
[2025-11-25 12:27:02] 2025-11-25 17:26:17,111 | INFO     | mean x: 1764061025.5934067
[2025-11-25 12:27:02] 2025-11-25 17:26:17,112 | INFO     | mean y: 2874280.3036963036
[2025-11-25 12:27:02] 2025-11-25 17:26:17,112 | INFO     | intersect: -7868355448.281082
[2025-11-25 12:27:02] 2025-11-25 17:26:17,112 | INFO     | chi2: 2.5409194801137533
[2025-11-25 12:27:02] 2025-11-25 17:26:17,113 | INFO     | current chi2=2.5409194801137533 (change=40.33885567539754 %)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,113 | INFO     | sum of square deviations: 306376116207.93884
[2025-11-25 12:27:02] 2025-11-25 17:26:17,128 | INFO     | sum of deviations: 1326561823060.1978
[2025-11-25 12:27:02] 2025-11-25 17:26:17,129 | INFO     | mean x: 1764061178.0953815
[2025-11-25 12:27:02] 2025-11-25 17:26:17,129 | INFO     | mean y: 2876291.608433735
[2025-11-25 12:27:02] 2025-11-25 17:26:17,129 | INFO     | intersect: -7635239372.785159
[2025-11-25 12:27:02] 2025-11-25 17:26:17,130 | INFO     | chi2: 2.4972067535594515
[2025-11-25 12:27:02] 2025-11-25 17:26:17,130 | INFO     | current chi2=2.4972067535594515 (change=1.720350719352384 %)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,130 | INFO     | left removable region: 20
[2025-11-25 12:27:02] 2025-11-25 17:26:17,130 | INFO     | sum of square deviations: 287402906415.7988
[2025-11-25 12:27:02] 2025-11-25 17:26:17,150 | INFO     | sum of deviations: 1588255425223.9995
[2025-11-25 12:27:02] 2025-11-25 17:26:17,151 | INFO     | mean x: 1764061147.6010256
[2025-11-25 12:27:02] 2025-11-25 17:26:17,151 | INFO     | mean y: 2889871.197948718
[2025-11-25 12:27:02] 2025-11-25 17:26:17,151 | INFO     | intersect: -9745723053.581392
[2025-11-25 12:27:02] 2025-11-25 17:26:17,152 | INFO     | chi2: 0.10463613220753608
[2025-11-25 12:27:02] 2025-11-25 17:26:17,152 | INFO     | current memory leak: 5.53 B/s (using 975 data points, chi2=0.10)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,153 | INFO     | could have reported an average CPU frequency of 2999 MHz (37 samples)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,154 | INFO     | ..............................
[2025-11-25 12:27:02] 2025-11-25 17:26:17,154 | INFO     | . Timing measurements:
[2025-11-25 12:27:02] 2025-11-25 17:26:17,154 | INFO     | . get job = 0 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,154 | INFO     | . initial setup = 2 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,154 | INFO     | . payload setup = 5 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,154 | INFO     | . stage-in = 0 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,155 | INFO     | . payload execution = 61347 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,155 | INFO     | . stage-out = 4 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,155 | INFO     | . log creation = 0 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,155 | INFO     | ..............................
[2025-11-25 12:27:02] 2025-11-25 17:26:17,597 | INFO     | 
[2025-11-25 12:27:02] 2025-11-25 17:26:17,597 | INFO     | job summary report
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | --------------------------------------------------
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | PanDA job id: 6895651777
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | task id: 47556149
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | errors: (none)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | pilot state: finished 
[2025-11-25 12:27:02] 2025-11-25 17:26:17,598 | INFO     | transexitcode: 0
[2025-11-25 12:27:02] 2025-11-25 17:26:17,599 | INFO     | exeerrorcode: 0
[2025-11-25 12:27:02] 2025-11-25 17:26:17,599 | INFO     | exeerrordiag: 
[2025-11-25 12:27:02] 2025-11-25 17:26:17,599 | INFO     | exitcode: 0
[2025-11-25 12:27:02] 2025-11-25 17:26:17,599 | INFO     | exitmsg: OK
[2025-11-25 12:27:02] 2025-11-25 17:26:17,599 | INFO     | cpuconsumptiontime: 473692 s
[2025-11-25 12:27:02] 2025-11-25 17:26:17,599 | INFO     | nevents: 1000
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | neventsw: 0
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | pid: 13836
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | pgrp: 13836
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | corecount: 8
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | event service: False
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | sizes: {0: 2283476, 1: 2284332, 5: 2284594, 12: 2284650, 61356: 2337286, 61357: 2337285, 61362: 2346468, 61364: 2346524, 61368: 2346770}
[2025-11-25 12:27:02] 2025-11-25 17:26:17,600 | INFO     | --------------------------------------------------
[2025-11-25 12:27:02] 2025-11-25 17:26:17,601 | INFO     | 
[2025-11-25 12:27:02] 2025-11-25 17:26:17,601 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-25 12:27:02] 2025-11-25 17:26:17,619 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,619 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,619 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,619 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,620 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | job 6895651777 has completed (purged errors)
[2025-11-25 12:27:02] 2025-11-25 17:26:17,621 | INFO     | overall cleanup function is called
[2025-11-25 12:27:02] 2025-11-25 17:26:18,634 | INFO     | --- collectZombieJob: --- 10, [13836]
[2025-11-25 12:27:02] 2025-11-25 17:26:18,634 | INFO     | zombie collector waiting for pid 13836
[2025-11-25 12:27:02] 2025-11-25 17:26:18,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 12:27:02] 2025-11-25 17:26:18,635 | INFO     | collected zombie processes
[2025-11-25 12:27:02] 2025-11-25 17:26:18,635 | INFO     | will attempt to kill all subprocesses of pid=13836
[2025-11-25 12:27:02] 2025-11-25 17:26:18,948 | INFO     | process IDs to be killed: [13836] (in reverse order)
[2025-11-25 12:27:02] 2025-11-25 17:26:19,046 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 12:27:02] 2025-11-25 17:26:19,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 12:27:02] 2025-11-25 17:26:19,060 | INFO     | did not find any defunct processes belonging to 13836
[2025-11-25 12:27:02] 2025-11-25 17:26:19,070 | INFO     | did not find any defunct processes belonging to 13836
[2025-11-25 12:27:02] 2025-11-25 17:26:19,072 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 12:27:02] 2025-11-25 17:26:19,072 | INFO     | ready for new job
[2025-11-25 12:27:02] 2025-11-25 17:26:19,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 12:27:02] 2025-11-25 17:26:19,077 | INFO     | ***************************************
[2025-11-25 12:27:02] 2025-11-25 17:26:19,078 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 12:27:02] 2025-11-25 17:26:19,078 | INFO     | ***************************************
[2025-11-25 12:27:02] 2025-11-25 17:26:19,078 | INFO     | 
[2025-11-25 12:27:02] 2025-11-25 17:26:19,080 | INFO     | architecture information:
[2025-11-25 12:27:02] 2025-11-25 17:26:19,080 | INFO     | executing command: cat /etc/os-release
[2025-11-25 12:27:02] 2025-11-25 17:26:19,093 | INFO     | cat /etc/os-release:
[2025-11-25 12:27:02] NAME="CentOS Linux"
[2025-11-25 12:27:02] VERSION="7 (Core)"
[2025-11-25 12:27:02] ID="centos"
[2025-11-25 12:27:02] ID_LIKE="rhel fedora"
[2025-11-25 12:27:02] VERSION_ID="7"
[2025-11-25 12:27:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 12:27:02] ANSI_COLOR="0;31"
[2025-11-25 12:27:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 12:27:02] HOME_URL="https://www.centos.org/"
[2025-11-25 12:27:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 12:27:02] 
[2025-11-25 12:27:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 12:27:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 12:27:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 12:27:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 12:27:02] 
[2025-11-25 12:27:02] 2025-11-25 17:26:19,094 | INFO     | ***************************************
[2025-11-25 12:27:02] 2025-11-25 17:26:19,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-25 12:27:02] 2025-11-25 17:26:19,613 | INFO     | sufficient remaining disk space (102545489920 B)
[2025-11-25 12:27:02] 2025-11-25 17:26:19,613 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 12:27:02] 2025-11-25 17:26:19,613 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 12:27:02] 2025-11-25 17:26:19,613 | INFO     | update_server=False
[2025-11-25 12:27:02] 2025-11-25 17:26:19,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 12:27:02] 2025-11-25 17:26:19,614 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 12:27:02] 2025-11-25 17:26:19,614 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 12:27:02] 2025-11-25 17:26:19,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:27:02] 2025-11-25 17:26:19,615 | INFO     | aborting loop
[2025-11-25 12:27:02] 2025-11-25 17:26:19,794 | INFO     | all data control threads have been joined
[2025-11-25 12:27:02] 2025-11-25 17:26:19,889 | INFO     | all payload control threads have been joined
[2025-11-25 12:27:02] 2025-11-25 17:26:20,399 | INFO     | all job control threads have been joined
[2025-11-25 12:27:02] 2025-11-25 17:26:20,614 | INFO     | [job] retrieve thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:20,619 | INFO     | [job] job monitor thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:20,800 | INFO     | [data] control thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:20,895 | INFO     | [payload] control thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,114 | INFO     | [data] copytool_in thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,115 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,155 | INFO     | [payload] validate_post thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,403 | INFO     | [job] control thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,446 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,620 | INFO     | [data] copytool_out thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,637 | INFO     | [job] validate thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:21,949 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:22,150 | INFO     | [payload] failed_post thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:22,253 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 12:27:02] 2025-11-25 17:26:23,259 | INFO     | [job] queue monitor thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:23,621 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 12:27:02] 2025-11-25 17:26:50,217 | INFO     | PID=7230 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-25 12:27:02] 2025-11-25 17:26:50,218 | INFO     | .. there are 4 such processes running
[2025-11-25 12:27:02] 2025-11-25 17:26:50,218 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 12:27:02] 2025-11-25 17:26:50,218 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 12:27:02] 2025-11-25 17:26:50,219 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 12:27:02] 2025-11-25 17:26:56,756 | INFO     | [monitor] cgroup control has ended
[2025-11-25 12:27:02] 2025-11-25 17:26:57,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650084558656)>', '<ExcThread(monitor, started 140649366021888)>']
[2025-11-25 12:27:02] 2025-11-25 17:26:58,260 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 12:27:02] 2025-11-25 17:26:58,260 | INFO     | [monitor] control thread has ended
[2025-11-25 12:27:02] 2025-11-25 17:27:02,540 | INFO     | all workflow threads have been joined
[2025-11-25 12:27:02] 2025-11-25 17:27:02,540 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 12:27:02] 2025-11-25 17:27:02,541 | INFO     | traces error code: 0
[2025-11-25 12:27:02] 2025-11-25 17:27:02,541 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 12:27:02] 2025-11-25 17:27:02,659 [wrapper] ==== pilot stdout END ====
[2025-11-25 12:27:02] 2025-11-25 17:27:02,661 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 12:27:02] 2025-11-25 17:27:02,664 [wrapper] pilotpid: 7230
[2025-11-25 12:27:02] 2025-11-25 17:27:02,666 [wrapper] Pilot exit status: 0
[2025-11-25 12:27:02] 2025-11-25 17:27:02,677 [wrapper] pandaids: 6895651777
[2025-11-25 12:27:02] 2025-11-25 17:27:02,756 [wrapper] cleanup supervisor_pilot 11858 7231
[2025-11-25 12:27:02] 2025-11-25 17:27:02,759 [wrapper] Test setup, not cleaning
[2025-11-25 12:27:02] 2025-11-25 17:27:02,762 [wrapper] apfmon messages muted
[2025-11-25 12:27:02] 2025-11-25 17:27:02,765 [wrapper] ==== wrapper stdout END ====
[2025-11-25 12:27:02] 2025-11-25 17:27:02,767 [wrapper] ==== wrapper stderr END ====
[2025-11-25 12:27:02]  *** Error codes and diagnostics ***
[2025-11-25 12:27:02]     "exeErrorCode": 0,
[2025-11-25 12:27:02]     "exeErrorDiag": "",
[2025-11-25 12:27:02]     "pilotErrorCode": 0,
[2025-11-25 12:27:02]     "pilotErrorDiag": "",
[2025-11-25 12:27:02]  *** Listing of results directory ***
[2025-11-25 12:27:02] total 1318080
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas    576529 Nov 24 07:18 pilot3.tar.gz
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas      5112 Nov 24 07:41 queuedata.json
[2025-11-25 12:27:02] -rwx------ 1 boincer umatlas     36292 Nov 24 07:43 runpilot2-wrapper.sh
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas       100 Nov 24 19:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 12:27:02] -rwxr-xr-x 1 boincer umatlas      7986 Nov 24 19:22 run_atlas
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas       105 Nov 24 19:22 job.xml
[2025-11-25 12:27:02] -rw-r--r-- 2 boincer umatlas 408835570 Nov 24 19:23 EVNT.47483658._001339.pool.root.1
[2025-11-25 12:27:02] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 19:23 start_atlas.sh
[2025-11-25 12:27:02] drwxrwx--x 2 boincer umatlas      4096 Nov 24 19:23 shared
[2025-11-25 12:27:02] -rw-r--r-- 2 boincer umatlas    590106 Nov 24 19:23 input.tar.gz
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas         0 Nov 24 19:23 boinc_lockfile
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas      2783 Nov 24 19:23 pandaJob.out
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas        57 Nov 24 19:23 setup.sh.local
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas    991801 Nov 24 19:23 agis_schedconf.cvmfs.json
[2025-11-25 12:27:02] drwx------ 5 boincer umatlas      4096 Nov 24 19:23 pilot3
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas       533 Nov 25 12:15 boinc_task_state.xml
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas      6038 Nov 25 12:22 init_data.xml
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas 915840795 Nov 25 12:25 HITS.47556149._003251.pool.root.1
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas      1063 Nov 25 12:26 memory_monitor_summary.json
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas   1516240 Nov 25 12:26 agis_ddmendpoints.agis.ALL.json
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas   2193245 Nov 25 12:26 log.47556149._003251.job.log.tgz.1
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas      8649 Nov 25 12:26 heartbeat.json
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas      8192 Nov 25 12:26 boinc_mmap_file
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas        29 Nov 25 12:26 wrapper_checkpoint.txt
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas        95 Nov 25 12:26 pilot_heartbeat.json
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas      4821 Nov 25 12:27 pilotlog.txt
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas   8363450 Nov 25 12:27 log.47556149._003251.job.log.1
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas       353 Nov 25 12:27 output.list
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas       620 Nov 25 12:27 runtime_log
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas  10577920 Nov 25 12:27 result.tar.gz
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas       665 Nov 25 12:27 xtyLDmq5kh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHgLKDm2CUFWo.diag
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas      9333 Nov 25 12:27 runtime_log.err
[2025-11-25 12:27:02] -rw-r--r-- 1 boincer umatlas     21323 Nov 25 12:27 stderr.txt
[2025-11-25 12:27:02] HITS file was successfully produced:
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas 915840795 Nov 25 12:25 shared/HITS.pool.root.1
[2025-11-25 12:27:02]  *** Contents of shared directory: ***
[2025-11-25 12:27:02] total 1304568
[2025-11-25 12:27:02] -rw-r--r-- 2 boincer umatlas 408835570 Nov 24 19:23 ATLAS.root_0
[2025-11-25 12:27:02] -rw-r--r-- 2 boincer umatlas     15847 Nov 24 19:23 start_atlas.sh
[2025-11-25 12:27:02] -rw-r--r-- 2 boincer umatlas    590106 Nov 24 19:23 input.tar.gz
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas 915840795 Nov 25 12:25 HITS.pool.root.1
[2025-11-25 12:27:02] -rw------- 1 boincer umatlas  10577920 Nov 25 12:27 result.tar.gz
12:27:04 (3278): run_atlas exited; CPU time 474142.400146
12:27:04 (3278): called boinc_finish(0)

</stderr_txt>
]]>

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