Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:15:28 (13509): wrapper (7.7.26015): starting
07:15:28 (13509): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 07:15:28] Arguments: --nthreads 8
[2025-11-27 07:15:28] Threads: 8
[2025-11-27 07:15:28] Checking for CVMFS
[2025-11-27 07:15:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 07:15:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 07:15:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 07:15:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 07:15:31] 2.11.2.0 23125 173242 136264 153350 2 15 21546664 25165825 1288 130560 10 57834364 99.894 27465362 1985 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 07:15:31] CVMFS is ok
[2025-11-27 07:15:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 07:15:31] Checking for apptainer binary...
[2025-11-27 07:15:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 07:15:31] Running /usr/bin/apptainer --version
[2025-11-27 07:15:31] apptainer version 1.3.2-1.el7
[2025-11-27 07:15:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 07:15:38] cg-vwn409.simple-grid.lan
[2025-11-27 07:15:38] apptainer works
[2025-11-27 07:15:38] Set ATHENA_PROC_NUMBER=8
[2025-11-27 07:15:38] Set ATHENA_CORE_NUMBER=8
[2025-11-27 07:15:38] Starting ATLAS job with PandaID=6895364640
[2025-11-27 07:15:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:21:14]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:21:14] 2025-11-28 05:20:03,585 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 06:21:14] 2025-11-28 05:20:03,587 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-11-28 06:21:14] 2025-11-28 05:20:03,589 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-6895364640/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:21:14] 2025-11-28 05:20:03,589 | INFO     | extracted standard info from prmon json
[2025-11-28 06:21:14] 2025-11-28 05:20:03,590 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:21:14] 2025-11-28 05:20:03,590 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:21:14] 2025-11-28 05:20:03,632 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:21:14] 2025-11-28 05:20:03,634 | INFO     | sum of square deviations: 759534680797.8597
[2025-11-28 06:21:14] 2025-11-28 05:20:03,716 | INFO     | sum of deviations: 3504961005995.8945
[2025-11-28 06:21:14] 2025-11-28 05:20:03,717 | INFO     | mean x: 1764265986.5823443
[2025-11-28 06:21:14] 2025-11-28 05:20:03,717 | INFO     | mean y: 2852021.550445104
[2025-11-28 06:21:14] 2025-11-28 05:20:03,717 | INFO     | intersect: -8138558296.514674
[2025-11-28 06:21:14] 2025-11-28 05:20:03,719 | INFO     | chi2: 15.552455259388143
[2025-11-28 06:21:14] 2025-11-28 05:20:03,721 | INFO     | sum of square deviations: 751114633021.9803
[2025-11-28 06:21:14] 2025-11-28 05:20:03,773 | INFO     | sum of deviations: 3952170001528.029
[2025-11-28 06:21:14] 2025-11-28 05:20:03,773 | INFO     | mean x: 1764265834.0863738
[2025-11-28 06:21:14] 2025-11-28 05:20:03,773 | INFO     | mean y: 2860120.137751303
[2025-11-28 06:21:14] 2025-11-28 05:20:03,774 | INFO     | intersect: -9280248206.67466
[2025-11-28 06:21:14] 2025-11-28 05:20:03,775 | INFO     | chi2: 12.422121907036097
[2025-11-28 06:21:14] 2025-11-28 05:20:03,776 | INFO     | current chi2=12.422121907036097 (change=20.127583073820066 %)
[2025-11-28 06:21:14] 2025-11-28 05:20:03,776 | INFO     | right removable region: 1342
[2025-11-28 06:21:14] 2025-11-28 05:20:03,778 | INFO     | sum of square deviations: 751113743031.9805
[2025-11-28 06:21:14] 2025-11-28 05:20:03,827 | INFO     | sum of deviations: 2945573468295.0874
[2025-11-28 06:21:14] 2025-11-28 05:20:03,827 | INFO     | mean x: 1764266139.0863738
[2025-11-28 06:21:14] 2025-11-28 05:20:03,828 | INFO     | mean y: 2862151.283693224
[2025-11-28 06:21:14] 2025-11-28 05:20:03,828 | INFO     | intersect: -6915897595.178526
[2025-11-28 06:21:14] 2025-11-28 05:20:03,829 | INFO     | chi2: 10.976950864573055
[2025-11-28 06:21:14] 2025-11-28 05:20:03,830 | INFO     | current chi2=10.976950864573055 (change=29.419820333854446 %)
[2025-11-28 06:21:14] 2025-11-28 05:20:03,832 | INFO     | sum of square deviations: 742755271553.5575
[2025-11-28 06:21:14] 2025-11-28 05:20:03,897 | INFO     | sum of deviations: 2491198334406.253
[2025-11-28 06:21:14] 2025-11-28 05:20:03,897 | INFO     | mean x: 1764266291.5904336
[2025-11-28 06:21:14] 2025-11-28 05:20:03,898 | INFO     | mean y: 2870440.832585949
[2025-11-28 06:21:14] 2025-11-28 05:20:03,898 | INFO     | intersect: -5914471940.146081
[2025-11-28 06:21:14] 2025-11-28 05:20:03,899 | INFO     | chi2: 8.078016577915465
[2025-11-28 06:21:14] 2025-11-28 05:20:03,900 | INFO     | current chi2=8.078016577915465 (change=26.409285442040137 %)
[2025-11-28 06:21:14] 2025-11-28 05:20:03,901 | INFO     | sum of square deviations: 734459278291.6497
[2025-11-28 06:21:14] 2025-11-28 05:20:03,956 | INFO     | sum of deviations: 2297654897276.3794
[2025-11-28 06:21:14] 2025-11-28 05:20:03,957 | INFO     | mean x: 1764266444.092273
[2025-11-28 06:21:14] 2025-11-28 05:20:03,957 | INFO     | mean y: 2873994.5903975996
[2025-11-28 06:21:14] 2025-11-28 05:20:03,957 | INFO     | intersect: -5516391069.087242
[2025-11-28 06:21:14] 2025-11-28 05:20:03,959 | INFO     | chi2: 7.452375637947041
[2025-11-28 06:21:14] 2025-11-28 05:20:03,959 | INFO     | current chi2=7.452375637947041 (change=7.744982124434692 %)
[2025-11-28 06:21:14] 2025-11-28 05:20:03,959 | INFO     | left removable region: 30
[2025-11-28 06:21:14] 2025-11-28 05:20:03,961 | INFO     | sum of square deviations: 700291706779.3169
[2025-11-28 06:21:14] 2025-11-28 05:20:04,021 | INFO     | sum of deviations: 2647403172060.3906
[2025-11-28 06:21:14] 2025-11-28 05:20:04,022 | INFO     | mean x: 1764266718.598323
[2025-11-28 06:21:14] 2025-11-28 05:20:04,022 | INFO     | mean y: 2887804.9969512196
[2025-11-28 06:21:14] 2025-11-28 05:20:04,022 | INFO     | intersect: -6666797501.800012
[2025-11-28 06:21:14] 2025-11-28 05:20:04,024 | INFO     | chi2: 3.4490292822927424
[2025-11-28 06:21:14] 2025-11-28 05:20:04,024 | INFO     | current memory leak: 3.78 B/s (using 1312 data points, chi2=3.45)
[2025-11-28 06:21:14] 2025-11-28 05:20:04,026 | INFO     | could have reported an average CPU frequency of 1999 MHz (46 samples)
[2025-11-28 06:21:14] 2025-11-28 05:20:04,026 | INFO     | ..............................
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . Timing measurements:
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . get job = 0 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . initial setup = 12 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . payload setup = 163 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . stage-in = 0 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . payload execution = 82359 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . stage-out = 5 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | . log creation = 2 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,027 | INFO     | ..............................
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | 
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | job summary report
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | --------------------------------------------------
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | PanDA job id: 6895364640
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | task id: 47556137
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | errors: (none)
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | pilot state: finished 
[2025-11-28 06:21:14] 2025-11-28 05:20:04,149 | INFO     | transexitcode: 0
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | exeerrorcode: 0
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | exeerrordiag: 
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | exitcode: 0
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | exitmsg: OK
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | cpuconsumptiontime: 313138 s
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | nevents: 1000
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | neventsw: 0
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | pid: 23882
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | pgrp: 23882
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | corecount: 8
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | event service: False
[2025-11-28 06:21:14] 2025-11-28 05:20:04,150 | INFO     | sizes: {0: 2283487, 1: 2284172, 2: 2284371, 3: 2284371, 14: 2284399, 24: 2284427, 35: 2284583, 46: 2284611, 56: 2284639, 67: 2284667, 78: 2284695, 89: 2285031, 92:
[2025-11-28 06:21:14] 2025-11-28 05:20:04,151 | INFO     | --------------------------------------------------
[2025-11-28 06:21:14] 2025-11-28 05:20:04,151 | INFO     | 
[2025-11-28 06:21:14] 2025-11-28 05:20:04,151 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-11-28 06:21:14] 2025-11-28 05:20:04,166 | INFO     | time since job start (82825s) is within the limit (172800.0s)
[2025-11-28 06:21:14] 2025-11-28 05:20:04,517 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,517 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | job 6895364640 has completed (purged errors)
[2025-11-28 06:21:14] 2025-11-28 05:20:04,519 | INFO     | overall cleanup function is called
[2025-11-28 06:21:14] 2025-11-28 05:20:05,539 | INFO     | --- collectZombieJob: --- 10, [23882]
[2025-11-28 06:21:14] 2025-11-28 05:20:05,539 | INFO     | zombie collector waiting for pid 23882
[2025-11-28 06:21:14] 2025-11-28 05:20:05,539 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:21:14] 2025-11-28 05:20:05,539 | INFO     | collected zombie processes
[2025-11-28 06:21:14] 2025-11-28 05:20:05,539 | INFO     | will attempt to kill all subprocesses of pid=23882
[2025-11-28 06:21:14] 2025-11-28 05:20:05,645 | INFO     | process IDs to be killed: [23882] (in reverse order)
[2025-11-28 06:21:14] 2025-11-28 05:20:06,382 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:21:14] 2025-11-28 05:20:06,383 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:21:14] 2025-11-28 05:20:06,386 | INFO     | did not find any defunct processes belonging to 23882
[2025-11-28 06:21:14] 2025-11-28 05:20:06,389 | INFO     | did not find any defunct processes belonging to 23882
[2025-11-28 06:21:14] 2025-11-28 05:20:06,451 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:21:14] 2025-11-28 05:20:06,451 | INFO     | ready for new job
[2025-11-28 06:21:14] 2025-11-28 05:20:06,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:21:14] 2025-11-28 05:20:06,457 | INFO     | ***************************************
[2025-11-28 06:21:14] 2025-11-28 05:20:06,457 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:21:14] 2025-11-28 05:20:06,457 | INFO     | ***************************************
[2025-11-28 06:21:14] 2025-11-28 05:20:06,457 | INFO     | 
[2025-11-28 06:21:14] 2025-11-28 05:20:06,458 | INFO     | pilot is running in a VM
[2025-11-28 06:21:14] 2025-11-28 05:20:06,458 | INFO     | architecture information:
[2025-11-28 06:21:14] 2025-11-28 05:20:06,474 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:21:14] 2025-11-28 05:20:06,768 | INFO     | cat /etc/os-release:
[2025-11-28 06:21:14] NAME="CentOS Linux"
[2025-11-28 06:21:14] VERSION="7 (Core)"
[2025-11-28 06:21:14] ID="centos"
[2025-11-28 06:21:14] ID_LIKE="rhel fedora"
[2025-11-28 06:21:14] VERSION_ID="7"
[2025-11-28 06:21:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:21:14] ANSI_COLOR="0;31"
[2025-11-28 06:21:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:21:14] HOME_URL="https://www.centos.org/"
[2025-11-28 06:21:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:21:14] 
[2025-11-28 06:21:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:21:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:21:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:21:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:21:14] 
[2025-11-28 06:21:14] 2025-11-28 05:20:06,768 | INFO     | ***************************************
[2025-11-28 06:21:14] 2025-11-28 05:20:07,272 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-11-28 06:21:14] 2025-11-28 05:20:07,513 | INFO     | sufficient remaining disk space (495042166784 B)
[2025-11-28 06:21:14] 2025-11-28 05:20:07,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:21:14] 2025-11-28 05:20:07,513 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:21:14] 2025-11-28 05:20:07,513 | INFO     | update_server=False
[2025-11-28 06:21:14] 2025-11-28 05:20:07,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:21:14] 2025-11-28 05:20:07,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:21:14] 2025-11-28 05:20:07,515 | INFO     | aborting loop
[2025-11-28 06:21:14] 2025-11-28 05:20:08,193 | INFO     | all job control threads have been joined
[2025-11-28 06:21:14] 2025-11-28 05:20:08,520 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:08,524 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:08,528 | INFO     | all data control threads have been joined
[2025-11-28 06:21:14] 2025-11-28 05:20:08,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:21:14] 2025-11-28 05:20:08,746 | INFO     | all payload control threads have been joined
[2025-11-28 06:21:14] 2025-11-28 05:20:08,933 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,046 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,121 | INFO     | [job] validate thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:21:14] 2025-11-28 05:20:09,199 | INFO     | [job] control thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,367 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,510 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,534 | INFO     | [data] control thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,680 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,752 | INFO     | [payload] control thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:09,938 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:10,122 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:10,169 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:10,671 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:10,734 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:21:14] 2025-11-28 05:20:14,744 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:21:14] 2025-11-28 05:20:31,158 [wrapper] supervise_pilot (15 min periods counter: 93)
[2025-11-28 06:21:14] 2025-11-28 05:20:37,323 | INFO     | PID=17322 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 06:21:14] 2025-11-28 05:20:37,323 | INFO     | .. there are 9 such processes running
[2025-11-28 06:21:14] 2025-11-28 05:20:37,324 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:21:14] 2025-11-28 05:20:37,324 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:21:14] 2025-11-28 05:20:37,324 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:21:14] 2025-11-28 05:21:03,189 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:21:14] 2025-11-28 05:21:05,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139732698756928)>', '<ExcThread(monitor, started 139732080105216)>']
[2025-11-28 06:21:14] 2025-11-28 05:21:05,492 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:21:14] 2025-11-28 05:21:05,492 | INFO     | [monitor] control thread has ended
[2025-11-28 06:21:14] 2025-11-28 05:21:10,204 | INFO     | all workflow threads have been joined
[2025-11-28 06:21:14] 2025-11-28 05:21:10,204 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:21:14] 2025-11-28 05:21:10,204 | INFO     | traces error code: 0
[2025-11-28 06:21:14] 2025-11-28 05:21:10,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:21:14] 2025-11-28 05:21:10,511 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:21:14] 2025-11-28 05:21:10,597 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:21:14] 2025-11-28 05:21:10,653 [wrapper] pilotpid: 17322
[2025-11-28 06:21:14] 2025-11-28 05:21:10,738 [wrapper] Pilot exit status: 0
[2025-11-28 06:21:14] 2025-11-28 05:21:11,032 [wrapper] pandaids: 6895364640
[2025-11-28 06:21:14] 2025-11-28 05:21:11,841 [wrapper] cleanup supervisor_pilot 28839 17323
[2025-11-28 06:21:14] 2025-11-28 05:21:11,853 [wrapper] Test setup, not cleaning
[2025-11-28 06:21:14] 2025-11-28 05:21:11,864 [wrapper] apfmon messages muted
[2025-11-28 06:21:14] 2025-11-28 05:21:11,872 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:21:14] 2025-11-28 05:21:11,880 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:21:14]  *** Error codes and diagnostics ***
[2025-11-28 06:21:14]     "exeErrorCode": 0,
[2025-11-28 06:21:14]     "exeErrorDiag": "",
[2025-11-28 06:21:14]     "pilotErrorCode": 0,
[2025-11-28 06:21:14]     "pilotErrorDiag": "",
[2025-11-28 06:21:14]  *** Listing of results directory ***
[2025-11-28 06:21:14] total 1326276
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc      5112 Nov 23 17:03 queuedata.json
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc    576529 Nov 23 17:03 pilot3.tar.gz
[2025-11-28 06:21:14] -rwx------. 1 boinc boinc     36292 Nov 23 17:03 runpilot2-wrapper.sh
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc       100 Nov 27 07:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:21:14] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 07:15 run_atlas
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc       105 Nov 27 07:15 job.xml
[2025-11-28 06:21:14] -rw-r--r--. 2 boinc boinc 409238228 Nov 27 07:15 EVNT.47483658._000811.pool.root.1
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc      6393 Nov 27 07:15 init_data.xml
[2025-11-28 06:21:14] -rw-r--r--. 2 boinc boinc     15847 Nov 27 07:15 start_atlas.sh
[2025-11-28 06:21:14] drwxrwx--x. 2 boinc boinc        68 Nov 27 07:15 shared
[2025-11-28 06:21:14] -rw-r--r--. 2 boinc boinc    590105 Nov 27 07:15 input.tar.gz
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc         0 Nov 27 07:15 boinc_lockfile
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc      2786 Nov 27 07:15 pandaJob.out
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc    991554 Nov 27 07:19 agis_schedconf.cvmfs.json
[2025-11-28 06:21:14] drwx------. 5 boinc boinc      4096 Nov 27 07:19 pilot3
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc       533 Nov 28 06:03 boinc_task_state.xml
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc 918030505 Nov 28 06:16 HITS.47556137._007976.pool.root.1
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc      1026 Nov 28 06:18 memory_monitor_summary.json
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc   1516240 Nov 28 06:18 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc   2446703 Nov 28 06:18 log.47556137._007976.job.log.tgz.1
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc      7945 Nov 28 06:20 heartbeat.json
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc        95 Nov 28 06:20 pilot_heartbeat.json
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc      8192 Nov 28 06:21 boinc_mmap_file
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc        29 Nov 28 06:21 wrapper_checkpoint.txt
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc      4884 Nov 28 06:21 pilotlog.txt
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc  11019330 Nov 28 06:21 log.47556137._007976.job.log.1
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc       353 Nov 28 06:21 output.list
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc       620 Nov 28 06:21 runtime_log
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc  13486080 Nov 28 06:21 result.tar.gz
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc       662 Nov 28 06:21 wrFNDmKkRh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmD2KKDm5Df8um.diag
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc      8817 Nov 28 06:21 runtime_log.err
[2025-11-28 06:21:14] -rw-r--r--. 1 boinc boinc     20973 Nov 28 06:21 stderr.txt
[2025-11-28 06:21:14] HITS file was successfully produced:
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc 918030505 Nov 28 06:16 shared/HITS.pool.root.1
[2025-11-28 06:21:14]  *** Contents of shared directory: ***
[2025-11-28 06:21:14] total 1309932
[2025-11-28 06:21:14] -rw-r--r--. 2 boinc boinc 409238228 Nov 27 07:15 ATLAS.root_0
[2025-11-28 06:21:14] -rw-r--r--. 2 boinc boinc     15847 Nov 27 07:15 start_atlas.sh
[2025-11-28 06:21:14] -rw-r--r--. 2 boinc boinc    590105 Nov 27 07:15 input.tar.gz
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc 918030505 Nov 28 06:16 HITS.pool.root.1
[2025-11-28 06:21:14] -rw-------. 1 boinc boinc  13486080 Nov 28 06:21 result.tar.gz
06:21:15 (13509): run_atlas exited; CPU time 313693.590554
06:21:15 (13509): called boinc_finish(0)

</stderr_txt>
]]>

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