Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:07 (1104193): wrapper (7.7.26015): starting
00:04:07 (1104193): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:04:08] Arguments: --nthreads 12
[2025-11-25 00:04:08] Threads: 12
[2025-11-25 00:04:08] Checking for CVMFS
[2025-11-25 00:04:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:04:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:04:08] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:04:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:04:09] 2.13.2.0 6491 34619 247528 153270 0 553 23119385 40960000 27486 16776704 0 144273797 99.582 142280286 39966 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 00:04:09] CVMFS is ok
[2025-11-25 00:04:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:04:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:04:09] Further information can be found at the LHC@home message board.
[2025-11-25 00:04:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:04:09] Checking for apptainer binary...
[2025-11-25 00:04:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:04:09] Running /usr/bin/apptainer --version
[2025-11-25 00:04:09] apptainer version 1.4.4-1.el9
[2025-11-25 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:04:09] c-212-20.aglt2.org
[2025-11-25 00:04:09] apptainer works
[2025-11-25 00:04:09] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:04:09] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:04:09] Starting ATLAS job with PandaID=6895377428
[2025-11-25 00:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 05:36:50]  *** The last 200 lines of the pilot log: ***
[2025-11-26 05:36:50] 2025-11-26 10:35:42,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:36:50] 2025-11-26 10:35:43,514 | INFO     | time since job start (106267s) is within the limit (172800.0s)
[2025-11-26 05:36:50] 2025-11-26 10:35:44,678 | INFO     | monitor loop #6525: job 0:6895377428 is in state 'finished'
[2025-11-26 05:36:50] 2025-11-26 10:35:44,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:36:50] 2025-11-26 10:35:45,523 | INFO     | time since job start (106269s) is within the limit (172800.0s)
[2025-11-26 05:36:50] 2025-11-26 10:35:47,187 | INFO     | monitor loop #6526: job 0:6895377428 is in state 'finished'
[2025-11-26 05:36:50] 2025-11-26 10:35:47,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:36:50] 2025-11-26 10:35:47,532 | INFO     | time since job start (106271s) is within the limit (172800.0s)
[2025-11-26 05:36:50] 2025-11-26 10:35:49,541 | INFO     | time since job start (106273s) is within the limit (172800.0s)
[2025-11-26 05:36:50] 2025-11-26 10:35:49,692 | INFO     | monitor loop #6527: job 0:6895377428 is in state 'finished'
[2025-11-26 05:36:50] 2025-11-26 10:35:49,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:36:50] 2025-11-26 10:35:51,548 | INFO     | time since job start (106275s) is within the limit (172800.0s)
[2025-11-26 05:36:50] 2025-11-26 10:35:52,197 | INFO     | monitor loop #6528: job 0:6895377428 is in state 'finished'
[2025-11-26 05:36:50] 2025-11-26 10:35:52,197 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 05:36:50] 2025-11-26 10:35:53,523 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 05:36:50] 2025-11-26 10:35:53,559 | INFO     | time since job start (106277s) is within the limit (172800.0s)
[2025-11-26 05:36:50] 2025-11-26 10:35:53,592 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3361.0799583333323
[2025-11-26 05:36:50] 2025-11-26 10:35:53,700 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895377428/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 05:36:50] 2025-11-26 10:35:53,701 | INFO     | extracted standard info from prmon json
[2025-11-26 05:36:50] 2025-11-26 10:35:53,701 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 05:36:50] 2025-11-26 10:35:53,701 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 05:36:50] 2025-11-26 10:35:53,893 | INFO     | fitting pss+swap vs Time
[2025-11-26 05:36:50] 2025-11-26 10:35:53,895 | INFO     | sum of square deviations: 1636491516804.2974
[2025-11-26 05:36:50] 2025-11-26 10:35:54,054 | INFO     | sum of deviations: 7754251315870.484
[2025-11-26 05:36:50] 2025-11-26 10:35:54,054 | INFO     | mean x: 1764100195.0201035
[2025-11-26 05:36:50] 2025-11-26 10:35:54,054 | INFO     | mean y: 3722918.470993682
[2025-11-26 05:36:50] 2025-11-26 10:35:54,055 | INFO     | intersect: -8355181553.746857
[2025-11-26 05:36:50] 2025-11-26 10:35:54,056 | INFO     | chi2: 27.753470352907915
[2025-11-26 05:36:50] 2025-11-26 10:35:54,057 | INFO     | sum of square deviations: 1622435150672.617
[2025-11-26 05:36:50] 2025-11-26 10:35:54,112 | INFO     | sum of deviations: 8507558394046.034
[2025-11-26 05:36:50] 2025-11-26 10:35:54,112 | INFO     | mean x: 1764100042.528226
[2025-11-26 05:36:50] 2025-11-26 10:35:54,113 | INFO     | mean y: 3731090.8669354836
[2025-11-26 05:36:50] 2025-11-26 10:35:54,113 | INFO     | intersect: -9246675077.001158
[2025-11-26 05:36:50] 2025-11-26 10:35:54,114 | INFO     | chi2: 24.460694746512097
[2025-11-26 05:36:50] 2025-11-26 10:35:54,114 | INFO     | current chi2=24.460694746512097 (change=11.864374308962093 %)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,114 | INFO     | right removable region: 1735
[2025-11-26 05:36:50] 2025-11-26 10:35:54,116 | INFO     | sum of square deviations: 1622432049488.5583
[2025-11-26 05:36:50] 2025-11-26 10:35:54,209 | INFO     | sum of deviations: 6883809559617.537
[2025-11-26 05:36:50] 2025-11-26 10:35:54,216 | INFO     | mean x: 1764100347.528802
[2025-11-26 05:36:50] 2025-11-26 10:35:54,216 | INFO     | mean y: 3732359.2390552997
[2025-11-26 05:36:50] 2025-11-26 10:35:54,217 | INFO     | intersect: -7481160977.447353
[2025-11-26 05:36:50] 2025-11-26 10:35:54,218 | INFO     | chi2: 23.979682007309247
[2025-11-26 05:36:50] 2025-11-26 10:35:54,218 | INFO     | current chi2=23.979682007309247 (change=13.597536803909147 %)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,218 | INFO     | left removable region: 10
[2025-11-26 05:36:50] 2025-11-26 10:35:54,220 | INFO     | sum of square deviations: 1591788862018.1035
[2025-11-26 05:36:50] 2025-11-26 10:35:54,303 | INFO     | sum of deviations: 7077500508593.412
[2025-11-26 05:36:50] 2025-11-26 10:35:54,303 | INFO     | mean x: 1764100317.0475361
[2025-11-26 05:36:50] 2025-11-26 10:35:54,304 | INFO     | mean y: 3750467.495072464
[2025-11-26 05:36:50] 2025-11-26 10:35:54,304 | INFO     | intersect: -7839890852.676282
[2025-11-26 05:36:50] 2025-11-26 10:35:54,311 | INFO     | chi2: 17.275997282803022
[2025-11-26 05:36:50] 2025-11-26 10:35:54,312 | INFO     | current memory leak: 4.45 B/s (using 1725 data points, chi2=17.28)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,313 | INFO     | could have reported an average CPU frequency of 3218 MHz (62 samples)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,320 | INFO     | ..............................
[2025-11-26 05:36:50] 2025-11-26 10:35:54,320 | INFO     | . Timing measurements:
[2025-11-26 05:36:50] 2025-11-26 10:35:54,320 | INFO     | . get job = 0 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,320 | INFO     | . initial setup = 3 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,320 | INFO     | . payload setup = 15 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,321 | INFO     | . stage-in = 0 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,321 | INFO     | . payload execution = 106208 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,321 | INFO     | . stage-out = 7 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,321 | INFO     | . log creation = 1 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,321 | INFO     | ..............................
[2025-11-26 05:36:50] 2025-11-26 10:35:54,571 | INFO     | 
[2025-11-26 05:36:50] 2025-11-26 10:35:54,571 | INFO     | job summary report
[2025-11-26 05:36:50] 2025-11-26 10:35:54,571 | INFO     | --------------------------------------------------
[2025-11-26 05:36:50] 2025-11-26 10:35:54,571 | INFO     | PanDA job id: 6895377428
[2025-11-26 05:36:50] 2025-11-26 10:35:54,571 | INFO     | task id: 47556137
[2025-11-26 05:36:50] 2025-11-26 10:35:54,571 | INFO     | errors: (none)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | pilot state: finished 
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | transexitcode: 0
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | exeerrorcode: 0
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | exeerrordiag: 
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | exitcode: 0
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | exitmsg: OK
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | cpuconsumptiontime: 210689 s
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | nevents: 1000
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | neventsw: 0
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | pid: 1131327
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | pgrp: 1131327
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | corecount: 12
[2025-11-26 05:36:50] 2025-11-26 10:35:54,572 | INFO     | event service: False
[2025-11-26 05:36:50] 2025-11-26 10:35:54,573 | INFO     | sizes: {0: 2284309, 10: 2284571, 11: 2284599, 106226: 2359190, 106227: 2359189, 106236: 2368244, 106239: 2368428, 106259: 2368674}
[2025-11-26 05:36:50] 2025-11-26 10:35:54,573 | INFO     | --------------------------------------------------
[2025-11-26 05:36:50] 2025-11-26 10:35:54,573 | INFO     | 
[2025-11-26 05:36:50] 2025-11-26 10:35:54,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 05:36:50] 2025-11-26 10:35:54,753 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | job 6895377428 has completed (purged errors)
[2025-11-26 05:36:50] 2025-11-26 10:35:54,755 | INFO     | overall cleanup function is called
[2025-11-26 05:36:50] 2025-11-26 10:35:55,857 | INFO     | --- collectZombieJob: --- 10, [1131327]
[2025-11-26 05:36:50] 2025-11-26 10:35:55,881 | INFO     | zombie collector waiting for pid 1131327
[2025-11-26 05:36:50] 2025-11-26 10:35:55,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 05:36:50] 2025-11-26 10:35:55,881 | INFO     | collected zombie processes
[2025-11-26 05:36:50] 2025-11-26 10:35:55,881 | INFO     | will attempt to kill all subprocesses of pid=1131327
[2025-11-26 05:36:50] 2025-11-26 10:35:58,140 | INFO     | process IDs to be killed: [1131327] (in reverse order)
[2025-11-26 05:36:50] 2025-11-26 10:35:58,641 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 05:36:50] 2025-11-26 10:35:58,642 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 05:36:50] 2025-11-26 10:35:58,663 | INFO     | did not find any defunct processes belonging to 1131327
[2025-11-26 05:36:50] 2025-11-26 10:35:58,779 | INFO     | did not find any defunct processes belonging to 1131327
[2025-11-26 05:36:50] 2025-11-26 10:35:58,794 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 05:36:50] 2025-11-26 10:35:58,794 | INFO     | ready for new job
[2025-11-26 05:36:50] 2025-11-26 10:35:58,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 05:36:50] 2025-11-26 10:35:58,822 | INFO     | ***************************************
[2025-11-26 05:36:50] 2025-11-26 10:35:58,823 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 05:36:50] 2025-11-26 10:35:58,823 | INFO     | ***************************************
[2025-11-26 05:36:50] 2025-11-26 10:35:58,823 | INFO     | 
[2025-11-26 05:36:50] 2025-11-26 10:35:58,845 | INFO     | architecture information:
[2025-11-26 05:36:50] 2025-11-26 10:35:58,861 | INFO     | executing command: cat /etc/os-release
[2025-11-26 05:36:50] 2025-11-26 10:35:58,994 | INFO     | cat /etc/os-release:
[2025-11-26 05:36:50] NAME="CentOS Linux"
[2025-11-26 05:36:50] VERSION="7 (Core)"
[2025-11-26 05:36:50] ID="centos"
[2025-11-26 05:36:50] ID_LIKE="rhel fedora"
[2025-11-26 05:36:50] VERSION_ID="7"
[2025-11-26 05:36:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 05:36:50] ANSI_COLOR="0;31"
[2025-11-26 05:36:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 05:36:50] HOME_URL="https://www.centos.org/"
[2025-11-26 05:36:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 05:36:50] 
[2025-11-26 05:36:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 05:36:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 05:36:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 05:36:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 05:36:50] 
[2025-11-26 05:36:50] 2025-11-26 10:35:58,995 | INFO     | ***************************************
[2025-11-26 05:36:50] 2025-11-26 10:35:59,498 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 05:36:50] 2025-11-26 10:35:59,609 | INFO     | sufficient remaining disk space (123391180800 B)
[2025-11-26 05:36:50] 2025-11-26 10:35:59,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 05:36:50] 2025-11-26 10:35:59,610 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 05:36:50] 2025-11-26 10:35:59,610 | INFO     | update_server=False
[2025-11-26 05:36:50] 2025-11-26 10:35:59,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 05:36:50] 2025-11-26 10:35:59,610 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 05:36:50] 2025-11-26 10:35:59,616 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:36:50] 2025-11-26 10:35:59,696 | INFO     | all job control threads have been joined
[2025-11-26 05:36:50] 2025-11-26 10:35:59,755 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 05:36:50] 2025-11-26 10:35:59,755 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 05:36:50] 2025-11-26 10:35:59,755 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 05:36:50] 2025-11-26 10:35:59,755 | INFO     | will abort loop
[2025-11-26 05:36:50] 2025-11-26 10:36:00,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 05:36:50] 2025-11-26 10:36:00,137 | INFO     | all payload control threads have been joined
[2025-11-26 05:36:50] 2025-11-26 10:36:00,340 | INFO     | all data control threads have been joined
[2025-11-26 05:36:50] 2025-11-26 10:36:00,615 | INFO     | [job] retrieve thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:00,622 | INFO     | [job] queue monitor thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:00,702 | INFO     | [job] control thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:00,761 | INFO     | [job] job monitor thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:00,830 | INFO     | [data] copytool_in thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:00,914 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:00,915 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,143 | INFO     | [payload] control thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,287 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,288 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,346 | INFO     | [data] control thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,600 | INFO     | [payload] validate_post thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,601 | INFO     | [payload] failed_post thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:01,868 | INFO     | [job] validate thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:02,064 | INFO     | [data] copytool_out thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:03,629 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 05:36:50] 2025-11-26 10:36:29,687 | INFO     | PID=1110940 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 05:36:50] 2025-11-26 10:36:29,688 | INFO     | .. there are 28 such processes running
[2025-11-26 05:36:50] 2025-11-26 10:36:29,689 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 05:36:50] 2025-11-26 10:36:29,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 05:36:50] 2025-11-26 10:36:29,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 05:36:50] 2025-11-26 10:36:43,302 | INFO     | [monitor] cgroup control has ended
[2025-11-26 05:36:50] 2025-11-26 10:36:43,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139685987444544)>', '<ExcThread(monitor, started 139685338797824)>']
[2025-11-26 05:36:50] 2025-11-26 10:36:43,811 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 05:36:50] 2025-11-26 10:36:43,811 | INFO     | [monitor] control thread has ended
[2025-11-26 05:36:50] 2025-11-26 10:36:48,600 | INFO     | all workflow threads have been joined
[2025-11-26 05:36:50] 2025-11-26 10:36:48,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 05:36:50] 2025-11-26 10:36:48,600 | INFO     | traces error code: 0
[2025-11-26 05:36:50] 2025-11-26 10:36:48,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 05:36:50] 2025-11-26 10:36:49,521 [wrapper] ==== pilot stdout END ====
[2025-11-26 05:36:50] 2025-11-26 10:36:49,524 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 05:36:50] 2025-11-26 10:36:49,526 [wrapper] pilotpid: 1110940
[2025-11-26 05:36:50] 2025-11-26 10:36:49,528 [wrapper] Pilot exit status: 0
[2025-11-26 05:36:50] 2025-11-26 10:36:49,555 [wrapper] pandaids: 6895377428
[2025-11-26 05:36:50] 2025-11-26 10:36:49,672 [wrapper] cleanup supervisor_pilot  622404 1110941
[2025-11-26 05:36:50] 2025-11-26 10:36:49,681 [wrapper] Test setup, not cleaning
[2025-11-26 05:36:50] 2025-11-26 10:36:49,688 [wrapper] apfmon messages muted
[2025-11-26 05:36:50] 2025-11-26 10:36:49,690 [wrapper] ==== wrapper stdout END ====
[2025-11-26 05:36:50] 2025-11-26 10:36:49,693 [wrapper] ==== wrapper stderr END ====
[2025-11-26 05:36:50]  *** Error codes and diagnostics ***
[2025-11-26 05:36:50]     "exeErrorCode": 0,
[2025-11-26 05:36:50]     "exeErrorDiag": "",
[2025-11-26 05:36:50]     "pilotErrorCode": 0,
[2025-11-26 05:36:50]     "pilotErrorDiag": "",
[2025-11-26 05:36:50]  *** Listing of results directory ***
[2025-11-26 05:36:50] total 1317504
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 19:34 pilot3.tar.gz
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 19:54 queuedata.json
[2025-11-26 05:36:50] -rwx------. 1 boincer umatlas     36292 Nov 23 19:55 runpilot2-wrapper.sh
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas       100 Nov 25 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 05:36:50] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 00:04 run_atlas
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas       105 Nov 25 00:04 job.xml
[2025-11-26 05:36:50] -rw-r--r--. 2 boincer umatlas 407267095 Nov 25 00:04 EVNT.47483658._000969.pool.root.1
[2025-11-26 05:36:50] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 00:04 shared
[2025-11-26 05:36:50] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:04 input.tar.gz
[2025-11-26 05:36:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas         0 Nov 25 00:04 boinc_lockfile
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas      2785 Nov 25 00:04 pandaJob.out
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas        57 Nov 25 00:04 setup.sh.local
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-26 05:36:50] drwx------. 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas       533 Nov 26 04:20 boinc_task_state.xml
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 05:31 init_data.xml
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas 904511885 Nov 26 05:34 HITS.47556137._009556.pool.root.1
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas      1075 Nov 26 05:35 memory_monitor_summary.json
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas   1516240 Nov 26 05:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas   3154578 Nov 26 05:35 log.47556137._009556.job.log.tgz.1
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas      8642 Nov 26 05:35 heartbeat.json
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas        95 Nov 26 05:36 pilot_heartbeat.json
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas      5011 Nov 26 05:36 pilotlog.txt
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 05:36 boinc_mmap_file
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas        29 Nov 26 05:36 wrapper_checkpoint.txt
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas  13554691 Nov 26 05:36 log.47556137._009556.job.log.1
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas       353 Nov 26 05:36 output.list
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas       620 Nov 26 05:36 runtime_log
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas  16732160 Nov 26 05:36 result.tar.gz
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas      9346 Nov 26 05:36 runtime_log.err
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas       670 Nov 26 05:36 7sAODmZ2Zh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwrIKDmKHF1vn.diag
[2025-11-26 05:36:50] -rw-r--r--. 1 boincer umatlas     21791 Nov 26 05:36 stderr.txt
[2025-11-26 05:36:50] HITS file was successfully produced:
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas 904511885 Nov 26 05:34 shared/HITS.pool.root.1
[2025-11-26 05:36:50]  *** Contents of shared directory: ***
[2025-11-26 05:36:50] total 1297980
[2025-11-26 05:36:50] -rw-r--r--. 2 boincer umatlas 407267095 Nov 25 00:04 ATLAS.root_0
[2025-11-26 05:36:50] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 00:04 input.tar.gz
[2025-11-26 05:36:50] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 00:04 start_atlas.sh
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas 904511885 Nov 26 05:34 HITS.pool.root.1
[2025-11-26 05:36:50] -rw-------. 1 boincer umatlas  16732160 Nov 26 05:36 result.tar.gz
05:36:51 (1104193): run_atlas exited; CPU time 211044.245172
05:36:51 (1104193): called boinc_finish(0)

</stderr_txt>
]]>

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