Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:01 (1383428): wrapper (7.7.26015): starting
00:03:01 (1383428): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 00:03:01] Arguments: --nthreads 12
[2025-11-25 00:03:01] Threads: 12
[2025-11-25 00:03:01] Checking for CVMFS
[2025-11-25 00:03:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 00:03:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 00:03:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 00:03:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 00:03:03] 2.13.3.0 44796 28024 364112 153270 2 380 30960995 32947200 32079 16776704 0 110367391 99.486 144202191 35072 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 00:03:03] CVMFS is ok
[2025-11-25 00:03:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 00:03:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 00:03:03] Further information can be found at the LHC@home message board.
[2025-11-25 00:03:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 00:03:03] Checking for apptainer binary...
[2025-11-25 00:03:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 00:03:03] Running /usr/bin/apptainer --version
[2025-11-25 00:03:04] apptainer version 1.4.4-1.el9
[2025-11-25 00:03:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 00:03:05] c6-6-8-2.aglt2.org
[2025-11-25 00:03:05] apptainer works
[2025-11-25 00:03:05] Set ATHENA_PROC_NUMBER=12
[2025-11-25 00:03:05] Set ATHENA_CORE_NUMBER=12
[2025-11-25 00:03:05] Starting ATLAS job with PandaID=6895376868
[2025-11-25 00:03:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 02:40:39]  *** The last 200 lines of the pilot log: ***
[2025-11-26 02:40:39] 2025-11-26 07:39:31,127 | INFO     | time since job start (95703s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:32,302 | INFO     | monitor loop #4883: job 0:6895376868 is in state 'finished'
[2025-11-26 02:40:39] 2025-11-26 07:39:32,303 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:40:39] 2025-11-26 07:39:33,135 | INFO     | time since job start (95705s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:34,810 | INFO     | monitor loop #4884: job 0:6895376868 is in state 'finished'
[2025-11-26 02:40:39] 2025-11-26 07:39:34,811 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:40:39] 2025-11-26 07:39:35,144 | INFO     | time since job start (95707s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:37,151 | INFO     | time since job start (95709s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:37,315 | INFO     | monitor loop #4885: job 0:6895376868 is in state 'finished'
[2025-11-26 02:40:39] 2025-11-26 07:39:37,320 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:40:39] 2025-11-26 07:39:39,158 | INFO     | time since job start (95711s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:39,826 | INFO     | monitor loop #4886: job 0:6895376868 is in state 'finished'
[2025-11-26 02:40:39] 2025-11-26 07:39:39,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:40:39] 2025-11-26 07:39:41,170 | INFO     | time since job start (95713s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:42,109 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 02:40:39] 2025-11-26 07:39:42,131 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2648.5023750000005
[2025-11-26 02:40:39] 2025-11-26 07:39:42,154 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6895376868/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 02:40:39] 2025-11-26 07:39:42,154 | INFO     | extracted standard info from prmon json
[2025-11-26 02:40:39] 2025-11-26 07:39:42,154 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 02:40:39] 2025-11-26 07:39:42,155 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 02:40:39] 2025-11-26 07:39:42,180 | INFO     | fitting pss+swap vs Time
[2025-11-26 02:40:39] 2025-11-26 07:39:42,182 | INFO     | sum of square deviations: 1189637966768.839
[2025-11-26 02:40:39] 2025-11-26 07:39:42,258 | INFO     | sum of deviations: 5008068340704.724
[2025-11-26 02:40:39] 2025-11-26 07:39:42,258 | INFO     | mean x: 1764094959.6722045
[2025-11-26 02:40:39] 2025-11-26 07:39:42,258 | INFO     | mean y: 3339871.145686901
[2025-11-26 02:40:39] 2025-11-26 07:39:42,259 | INFO     | intersect: -7423043923.1837635
[2025-11-26 02:40:39] 2025-11-26 07:39:42,264 | INFO     | chi2: 34.92511552974163
[2025-11-26 02:40:39] 2025-11-26 07:39:42,267 | INFO     | sum of square deviations: 1178279347192.9937
[2025-11-26 02:40:39] 2025-11-26 07:39:42,334 | INFO     | monitor loop #4887: job 0:6895376868 is in state 'finished'
[2025-11-26 02:40:39] 2025-11-26 07:39:42,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 02:40:39] 2025-11-26 07:39:42,666 | INFO     | sum of deviations: 5654960588757.593
[2025-11-26 02:40:39] 2025-11-26 07:39:42,666 | INFO     | mean x: 1764094807.1519232
[2025-11-26 02:40:39] 2025-11-26 07:39:42,667 | INFO     | mean y: 3348555.8455128204
[2025-11-26 02:40:39] 2025-11-26 07:39:42,667 | INFO     | intersect: -8463138303.184592
[2025-11-26 02:40:39] 2025-11-26 07:39:42,689 | INFO     | chi2: 31.103701307306675
[2025-11-26 02:40:39] 2025-11-26 07:39:42,689 | INFO     | current chi2=31.103701307306675 (change=10.941736811666965 %)
[2025-11-26 02:40:39] 2025-11-26 07:39:42,689 | INFO     | right removable region: 1559
[2025-11-26 02:40:39] 2025-11-26 07:39:42,691 | INFO     | sum of square deviations: 1178271065662.9934
[2025-11-26 02:40:39] 2025-11-26 07:39:43,056 | INFO     | sum of deviations: 4256924889058.8066
[2025-11-26 02:40:39] 2025-11-26 07:39:43,056 | INFO     | mean x: 1764095112.248077
[2025-11-26 02:40:39] 2025-11-26 07:39:43,056 | INFO     | mean y: 3349952.6
[2025-11-26 02:40:39] 2025-11-26 07:39:43,057 | INFO     | intersect: -6370073454.6618
[2025-11-26 02:40:39] 2025-11-26 07:39:43,076 | INFO     | chi2: 30.603110185932042
[2025-11-26 02:40:39] 2025-11-26 07:39:43,077 | INFO     | current chi2=30.603110185932042 (change=12.375063842320131 %)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,080 | INFO     | left removable region: 10
[2025-11-26 02:40:39] 2025-11-26 07:39:43,082 | INFO     | sum of square deviations: 1153529012851.3625
[2025-11-26 02:40:39] 2025-11-26 07:39:43,336 | INFO     | sum of deviations: 4358639782641.781
[2025-11-26 02:40:39] 2025-11-26 07:39:43,336 | INFO     | mean x: 1764095081.8005164
[2025-11-26 02:40:39] 2025-11-26 07:39:43,336 | INFO     | mean y: 3369306.5171078113
[2025-11-26 02:40:39] 2025-11-26 07:39:43,348 | INFO     | intersect: -6662310462.466047
[2025-11-26 02:40:39] 2025-11-26 07:39:43,351 | INFO     | chi2: 22.84249002991093
[2025-11-26 02:40:39] 2025-11-26 07:39:43,351 | INFO     | current memory leak: 3.78 B/s (using 1549 data points, chi2=22.84)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | could have reported an average CPU frequency of 2616 MHz (55 samples)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | ..............................
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . Timing measurements:
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . get job = 0 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . initial setup = 10 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . payload setup = 60 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . stage-in = 0 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . payload execution = 95516 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,365 | INFO     | . stage-out = 21 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,366 | INFO     | . log creation = 6 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,366 | INFO     | ..............................
[2025-11-26 02:40:39] 2025-11-26 07:39:43,394 | INFO     | time since job start (95715s) is within the limit (172800.0s)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,896 | INFO     | 
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | job summary report
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | --------------------------------------------------
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | PanDA job id: 6895376868
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | task id: 47556137
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | errors: (none)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | pilot state: finished 
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | transexitcode: 0
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | exeerrorcode: 0
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | exeerrordiag: 
[2025-11-26 02:40:39] 2025-11-26 07:39:43,897 | INFO     | exitcode: 0
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | exitmsg: OK
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | cpuconsumptiontime: 269389 s
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | nevents: 1000
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | neventsw: 0
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | pid: 1417737
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | pgrp: 1417737
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | corecount: 12
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | event service: False
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | sizes: {0: 2283431, 1: 2284116, 2: 2284315, 3: 2284343, 14: 2284343, 25: 2284371, 34: 2284789, 36: 2284817, 95578: 2352649, 95600: 2361676, 95604: 2361732, 95641: 
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | --------------------------------------------------
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | 
[2025-11-26 02:40:39] 2025-11-26 07:39:43,898 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 02:40:39] 2025-11-26 07:39:43,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,970 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,970 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,970 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,970 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,970 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,971 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,972 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 02:40:39] 2025-11-26 07:39:43,972 | INFO     | job 6895376868 has completed (purged errors)
[2025-11-26 02:40:39] 2025-11-26 07:39:43,972 | INFO     | overall cleanup function is called
[2025-11-26 02:40:39] 2025-11-26 07:39:45,006 | INFO     | --- collectZombieJob: --- 10, [1417737]
[2025-11-26 02:40:39] 2025-11-26 07:39:45,007 | INFO     | zombie collector waiting for pid 1417737
[2025-11-26 02:40:39] 2025-11-26 07:39:45,007 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 02:40:39] 2025-11-26 07:39:45,007 | INFO     | collected zombie processes
[2025-11-26 02:40:39] 2025-11-26 07:39:45,007 | INFO     | will attempt to kill all subprocesses of pid=1417737
[2025-11-26 02:40:39] 2025-11-26 07:39:47,284 | INFO     | process IDs to be killed: [1417737] (in reverse order)
[2025-11-26 02:40:39] 2025-11-26 07:39:47,513 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 02:40:39] 2025-11-26 07:39:47,513 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 02:40:39] 2025-11-26 07:39:47,583 | INFO     | did not find any defunct processes belonging to 1417737
[2025-11-26 02:40:39] 2025-11-26 07:39:47,676 | INFO     | did not find any defunct processes belonging to 1417737
[2025-11-26 02:40:39] 2025-11-26 07:39:47,684 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 02:40:39] 2025-11-26 07:39:47,684 | INFO     | ready for new job
[2025-11-26 02:40:39] 2025-11-26 07:39:47,685 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 02:40:39] 2025-11-26 07:39:47,701 | INFO     | ***************************************
[2025-11-26 02:40:39] 2025-11-26 07:39:47,701 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 02:40:39] 2025-11-26 07:39:47,701 | INFO     | ***************************************
[2025-11-26 02:40:39] 2025-11-26 07:39:47,701 | INFO     | 
[2025-11-26 02:40:39] 2025-11-26 07:39:47,723 | INFO     | architecture information:
[2025-11-26 02:40:39] 2025-11-26 07:39:47,723 | INFO     | executing command: cat /etc/os-release
[2025-11-26 02:40:39] 2025-11-26 07:39:47,768 | INFO     | cat /etc/os-release:
[2025-11-26 02:40:39] NAME="CentOS Linux"
[2025-11-26 02:40:39] VERSION="7 (Core)"
[2025-11-26 02:40:39] ID="centos"
[2025-11-26 02:40:39] ID_LIKE="rhel fedora"
[2025-11-26 02:40:39] VERSION_ID="7"
[2025-11-26 02:40:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 02:40:39] ANSI_COLOR="0;31"
[2025-11-26 02:40:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 02:40:39] HOME_URL="https://www.centos.org/"
[2025-11-26 02:40:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 02:40:39] 
[2025-11-26 02:40:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 02:40:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 02:40:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 02:40:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 02:40:39] 
[2025-11-26 02:40:39] 2025-11-26 07:39:47,768 | INFO     | ***************************************
[2025-11-26 02:40:39] 2025-11-26 07:39:48,274 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 02:40:39] 2025-11-26 07:39:48,350 | INFO     | sufficient remaining disk space (63816335360 B)
[2025-11-26 02:40:39] 2025-11-26 07:39:48,350 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 02:40:39] 2025-11-26 07:39:48,350 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 02:40:39] 2025-11-26 07:39:48,350 | INFO     | update_server=False
[2025-11-26 02:40:39] 2025-11-26 07:39:48,350 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 02:40:39] 2025-11-26 07:39:48,505 | INFO     | all data control threads have been joined
[2025-11-26 02:40:39] 2025-11-26 07:39:48,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:40:39] 2025-11-26 07:39:48,536 | INFO     | aborting loop
[2025-11-26 02:40:39] 2025-11-26 07:39:48,894 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 02:40:39] 2025-11-26 07:39:48,912 | INFO     | all payload control threads have been joined
[2025-11-26 02:40:39] 2025-11-26 07:39:48,988 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 02:40:39] 2025-11-26 07:39:49,239 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 02:40:39] 2025-11-26 07:39:49,357 | INFO     | [job] retrieve thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,500 | INFO     | [payload] failed_post thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,512 | INFO     | [data] control thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,566 | INFO     | [job] job monitor thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,706 | INFO     | all job control threads have been joined
[2025-11-26 02:40:39] 2025-11-26 07:39:49,749 | INFO     | [payload] validate_post thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,900 | INFO     | [job] queue monitor thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,921 | INFO     | [payload] control thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,994 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:49,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:50,424 | INFO     | [data] copytool_in thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:50,425 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:50,436 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:50,466 | INFO     | [job] validate thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:50,728 | INFO     | [job] control thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:50,995 | INFO     | [data] copytool_out thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:39:53,250 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 02:40:39] 2025-11-26 07:40:21,419 | INFO     | PID=1394137 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 02:40:39] 2025-11-26 07:40:21,419 | INFO     | .. there are 36 such processes running
[2025-11-26 02:40:39] 2025-11-26 07:40:21,427 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 02:40:39] 2025-11-26 07:40:21,428 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 02:40:39] 2025-11-26 07:40:21,428 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 02:40:39] 2025-11-26 07:40:31,387 | INFO     | [monitor] cgroup control has ended
[2025-11-26 02:40:39] 2025-11-26 07:40:32,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140302049449792)>', '<ExcThread(monitor, started 140301263951616)>']
[2025-11-26 02:40:39] 2025-11-26 07:40:32,496 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 02:40:39] 2025-11-26 07:40:32,497 | INFO     | [monitor] control thread has ended
[2025-11-26 02:40:39] 2025-11-26 07:40:37,419 | INFO     | all workflow threads have been joined
[2025-11-26 02:40:39] 2025-11-26 07:40:37,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 02:40:39] 2025-11-26 07:40:37,420 | INFO     | traces error code: 0
[2025-11-26 02:40:39] 2025-11-26 07:40:37,420 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 02:40:39] 2025-11-26 07:40:38,004 [wrapper] ==== pilot stdout END ====
[2025-11-26 02:40:39] 2025-11-26 07:40:38,175 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 02:40:39] 2025-11-26 07:40:38,191 [wrapper] pilotpid: 1394137
[2025-11-26 02:40:39] 2025-11-26 07:40:38,206 [wrapper] Pilot exit status: 0
[2025-11-26 02:40:39] 2025-11-26 07:40:38,382 [wrapper] pandaids: 6895376868
[2025-11-26 02:40:39] 2025-11-26 07:40:39,087 [wrapper] cleanup supervisor_pilot 2323629 1394138
[2025-11-26 02:40:39] 2025-11-26 07:40:39,102 [wrapper] Test setup, not cleaning
[2025-11-26 02:40:39] 2025-11-26 07:40:39,115 [wrapper] apfmon messages muted
[2025-11-26 02:40:39] 2025-11-26 07:40:39,145 [wrapper] ==== wrapper stdout END ====
[2025-11-26 02:40:39] 2025-11-26 07:40:39,164 [wrapper] ==== wrapper stderr END ====
[2025-11-26 02:40:39]  *** Error codes and diagnostics ***
[2025-11-26 02:40:39]     "exeErrorCode": 0,
[2025-11-26 02:40:39]     "exeErrorDiag": "",
[2025-11-26 02:40:39]     "pilotErrorCode": 0,
[2025-11-26 02:40:39]     "pilotErrorDiag": "",
[2025-11-26 02:40:39]  *** Listing of results directory ***
[2025-11-26 02:40:39] total 1316068
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas      5112 Nov 23 19:34 queuedata.json
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas    576529 Nov 23 19:34 pilot3.tar.gz
[2025-11-26 02:40:39] -rwx------ 1 boincer umatlas     36292 Nov 23 19:35 runpilot2-wrapper.sh
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas       100 Nov 25 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 02:40:39] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 00:02 run_atlas
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas       105 Nov 25 00:02 job.xml
[2025-11-26 02:40:39] -rw-r--r-- 2 boincer umatlas 408593572 Nov 25 00:03 EVNT.47483658._000964.pool.root.1
[2025-11-26 02:40:39] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 02:40:39] drwxrwx--x 2 boincer umatlas      4096 Nov 25 00:03 shared
[2025-11-26 02:40:39] -rw-r--r-- 2 boincer umatlas    590099 Nov 25 00:03 input.tar.gz
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas         0 Nov 25 00:03 boinc_lockfile
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas      2785 Nov 25 00:03 pandaJob.out
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas        57 Nov 25 00:03 setup.sh.local
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas    991801 Nov 25 00:04 agis_schedconf.cvmfs.json
[2025-11-26 02:40:39] drwx------ 5 boincer umatlas      4096 Nov 25 00:04 pilot3
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas       533 Nov 26 01:47 boinc_task_state.xml
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas 907461927 Nov 26 02:36 HITS.47556137._009505.pool.root.1
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas      6878 Nov 26 02:37 init_data.xml
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas      1069 Nov 26 02:38 memory_monitor_summary.json
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas   1516240 Nov 26 02:38 agis_ddmendpoints.agis.ALL.json
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas   2919530 Nov 26 02:39 log.47556137._009505.job.log.tgz.1
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas      8657 Nov 26 02:39 heartbeat.json
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas        95 Nov 26 02:40 pilot_heartbeat.json
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 02:40 boinc_mmap_file
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas        29 Nov 26 02:40 wrapper_checkpoint.txt
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas      4824 Nov 26 02:40 pilotlog.txt
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas  10916426 Nov 26 02:40 log.47556137._009505.job.log.1
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas       353 Nov 26 02:40 output.list
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas       620 Nov 26 02:40 runtime_log
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas  13854720 Nov 26 02:40 result.tar.gz
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas      9345 Nov 26 02:40 runtime_log.err
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas       665 Nov 26 02:40 dtcNDmtiZh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmhJLKDmI7MxLn.diag
[2025-11-26 02:40:39] -rw-r--r-- 1 boincer umatlas     21820 Nov 26 02:40 stderr.txt
[2025-11-26 02:40:39] HITS file was successfully produced:
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas 907461927 Nov 26 02:36 shared/HITS.pool.root.1
[2025-11-26 02:40:39]  *** Contents of shared directory: ***
[2025-11-26 02:40:39] total 1299352
[2025-11-26 02:40:39] -rw-r--r-- 2 boincer umatlas 408593572 Nov 25 00:03 ATLAS.root_0
[2025-11-26 02:40:39] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 00:03 start_atlas.sh
[2025-11-26 02:40:39] -rw-r--r-- 2 boincer umatlas    590099 Nov 25 00:03 input.tar.gz
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas 907461927 Nov 26 02:36 HITS.pool.root.1
[2025-11-26 02:40:39] -rw------- 1 boincer umatlas  13854720 Nov 26 02:40 result.tar.gz
02:40:41 (1383428): run_atlas exited; CPU time 272470.737840
02:40:41 (1383428): called boinc_finish(0)

</stderr_txt>
]]>

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