Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:57:32 (1282833): wrapper (7.7.26015): starting
13:57:32 (1282833): wrapper: running run_atlas (--nthreads 3)
[2025-11-27 13:57:32] Arguments: --nthreads 3
[2025-11-27 13:57:32] Threads: 3
[2025-11-27 13:57:32] Checking for CVMFS
[2025-11-27 13:57:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 13:57:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 13:57:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 13:57:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 13:57:33] 2.9.2.0 3803052 12694 70860 153364 2 81 35292791 36864001 0 130560 1 4551227 99.937 620228 798 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-27 13:57:33] CVMFS is ok
[2025-11-27 13:57:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 13:57:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 13:57:33] Further information can be found at the LHC@home message board.
[2025-11-27 13:57:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 13:57:33] Checking for apptainer binary...
[2025-11-27 13:57:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 13:57:33] Running /usr/bin/apptainer --version
[2025-11-27 13:57:33] apptainer version 1.4.1-1.1
[2025-11-27 13:57:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 13:57:33] thA333
[2025-11-27 13:57:33] apptainer works
[2025-11-27 13:57:33] Set ATHENA_PROC_NUMBER=3
[2025-11-27 13:57:33] Set ATHENA_CORE_NUMBER=3
[2025-11-27 13:57:33] Starting ATLAS job with PandaID=6895376935
[2025-11-27 13:57:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 22:40:36]  *** The last 200 lines of the pilot log: ***
[2025-11-27 22:40:36] 2025-11-27 21:39:52,092 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 22:40:36] 2025-11-27 21:39:52,092 | INFO     | ready for new job
[2025-11-27 22:40:36] 2025-11-27 21:39:52,092 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 22:40:36] 2025-11-27 21:39:52,093 | INFO     | ***************************************
[2025-11-27 22:40:36] 2025-11-27 21:39:52,093 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 22:40:36] 2025-11-27 21:39:52,093 | INFO     | ***************************************
[2025-11-27 22:40:36] 2025-11-27 21:39:52,093 | INFO     | 
[2025-11-27 22:40:36] 2025-11-27 21:39:52,093 | INFO     | architecture information:
[2025-11-27 22:40:36] 2025-11-27 21:39:52,094 | INFO     | executing command: cat /etc/os-release
[2025-11-27 22:40:36] 2025-11-27 21:39:52,103 | INFO     | cat /etc/os-release:
[2025-11-27 22:40:36] NAME="CentOS Linux"
[2025-11-27 22:40:36] VERSION="7 (Core)"
[2025-11-27 22:40:36] ID="centos"
[2025-11-27 22:40:36] ID_LIKE="rhel fedora"
[2025-11-27 22:40:36] VERSION_ID="7"
[2025-11-27 22:40:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 22:40:36] ANSI_COLOR="0;31"
[2025-11-27 22:40:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 22:40:36] HOME_URL="https://www.centos.org/"
[2025-11-27 22:40:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 22:40:36] 
[2025-11-27 22:40:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 22:40:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 22:40:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 22:40:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 22:40:36] 
[2025-11-27 22:40:36] 2025-11-27 21:39:52,104 | INFO     | ***************************************
[2025-11-27 22:40:36] 2025-11-27 21:39:52,607 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-27 22:40:36] 2025-11-27 21:39:52,620 | INFO     | sufficient remaining disk space (221321887744 B)
[2025-11-27 22:40:36] 2025-11-27 21:39:52,620 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 22:40:36] 2025-11-27 21:39:52,620 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 22:40:36] 2025-11-27 21:39:52,620 | INFO     | update_server=False
[2025-11-27 22:40:36] 2025-11-27 21:39:52,620 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 22:40:36] 2025-11-27 21:39:53,054 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:40:36] 2025-11-27 21:39:53,054 | INFO     | aborting loop
[2025-11-27 22:40:36] 2025-11-27 21:39:53,200 | INFO     | all payload control threads have been joined
[2025-11-27 22:40:36] 2025-11-27 21:39:53,210 | INFO     | all data control threads have been joined
[2025-11-27 22:40:36] 2025-11-27 21:39:53,247 | INFO     | all job control threads have been joined
[2025-11-27 22:40:36] 2025-11-27 21:39:53,626 | INFO     | [job] retrieve thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:53,682 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 22:40:36] 2025-11-27 21:39:53,812 | INFO     | [payload] failed_post thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,060 | INFO     | [job] job monitor thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,109 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,147 | INFO     | [job] validate thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,206 | INFO     | [payload] control thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,216 | INFO     | [data] control thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,252 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,252 | INFO     | [job] control thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,314 | INFO     | [payload] validate_post thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,508 | INFO     | [data] copytool_in thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:54,649 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:55,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 22:40:36] 2025-11-27 21:39:55,544 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 22:40:36] 2025-11-27 21:39:55,687 | INFO     | [data] copytool_out thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:56,550 | INFO     | [job] queue monitor thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:39:59,381 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:40:03,475 | INFO     | job.realtimelogging is not enabled
[2025-11-27 22:40:36] 2025-11-27 21:40:04,481 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 22:40:36] 2025-11-27 21:40:23,064 | INFO     | PID=1286563 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 22:40:36] 2025-11-27 21:40:23,064 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 22:40:36] 2025-11-27 21:40:23,064 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 22:40:36] 2025-11-27 21:40:23,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 22:40:36] 2025-11-27 21:40:30,632 | INFO     | [monitor] cgroup control has ended
[2025-11-27 22:40:36] 2025-11-27 21:40:31,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140032263546688)>', '<ExcThread(monitor, started 140031637321472)>']
[2025-11-27 22:40:36] 2025-11-27 21:40:31,107 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 22:40:36] 2025-11-27 21:40:31,108 | INFO     | [monitor] control thread has ended
[2025-11-27 22:40:36] 2025-11-27 21:40:36,062 | INFO     | all workflow threads have been joined
[2025-11-27 22:40:36] 2025-11-27 21:40:36,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 22:40:36] 2025-11-27 21:40:36,063 | INFO     | traces error code: 0
[2025-11-27 22:40:36] 2025-11-27 21:40:36,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 22:40:36] 2025-11-27 21:40:36,110 [wrapper] ==== pilot stdout END ====
[2025-11-27 22:40:36] 2025-11-27 21:40:36,113 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 22:40:36] 2025-11-27 21:40:36,116 [wrapper] pilotpid: 1286563
[2025-11-27 22:40:36] 2025-11-27 21:40:36,119 [wrapper] Pilot exit status: 0
[2025-11-27 22:40:36] 2025-11-27 21:40:36,125 [wrapper] pandaids: 6895376935
[2025-11-27 22:40:36] 2025-11-27 21:40:36,143 [wrapper] cleanup supervisor_pilot 1345464 1286564
[2025-11-27 22:40:36] 2025-11-27 21:40:36,146 [wrapper] Test setup, not cleaning
[2025-11-27 22:40:36] 2025-11-27 21:40:36,149 [wrapper] apfmon messages muted
[2025-11-27 22:40:36] 2025-11-27 21:40:36,152 [wrapper] ==== wrapper stdout END ====
[2025-11-27 22:40:36] 2025-11-27 21:40:36,154 [wrapper] ==== wrapper stderr END ====
[2025-11-27 22:40:36]  *** Error codes and diagnostics ***
[2025-11-27 22:40:36]     "exeErrorCode": 0,
[2025-11-27 22:40:36]     "exeErrorDiag": "",
[2025-11-27 22:40:36]     "pilotErrorCode": 0,
[2025-11-27 22:40:36]     "pilotErrorDiag": "",
[2025-11-27 22:40:36]  *** Listing of results directory ***
[2025-11-27 22:40:36] total 1309304
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc    576529 Nov 24 01:34 pilot3.tar.gz
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc      5112 Nov 24 01:42 queuedata.json
[2025-11-27 22:40:36] -rwx------ 1 boinc boinc     36292 Nov 24 01:43 runpilot2-wrapper.sh
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc       100 Nov 27 13:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 22:40:36] -rwxr-xr-x 1 boinc boinc      7986 Nov 27 13:57 run_atlas
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc       105 Nov 27 13:57 job.xml
[2025-11-27 22:40:36] -rw-r--r-- 2 boinc boinc 411039245 Nov 27 13:57 EVNT.47483658._001207.pool.root.1
[2025-11-27 22:40:36] -rw-r--r-- 2 boinc boinc    590104 Nov 27 13:57 input.tar.gz
[2025-11-27 22:40:36] -rw-r--r-- 2 boinc boinc     15847 Nov 27 13:57 start_atlas.sh
[2025-11-27 22:40:36] drwxrwx--x 2 boinc boinc      4096 Nov 27 13:57 shared
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc         0 Nov 27 13:57 boinc_setup_complete
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc      6198 Nov 27 13:57 init_data.xml
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc         0 Nov 27 13:57 boinc_lockfile
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc      2782 Nov 27 13:57 pandaJob.out
[2025-11-27 22:40:36] -rw------- 1 boinc boinc    991566 Nov 27 13:57 agis_schedconf.cvmfs.json
[2025-11-27 22:40:36] drwx------ 5 boinc boinc      4096 Nov 27 13:57 pilot3
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc       532 Nov 27 22:36 boinc_task_state.xml
[2025-11-27 22:40:36] -rw------- 1 boinc boinc 914574754 Nov 27 22:39 HITS.47556149._001931.pool.root.1
[2025-11-27 22:40:36] -rw------- 1 boinc boinc      1036 Nov 27 22:39 memory_monitor_summary.json
[2025-11-27 22:40:36] -rw------- 1 boinc boinc   1516240 Nov 27 22:39 agis_ddmendpoints.agis.ALL.json
[2025-11-27 22:40:36] -rw------- 1 boinc boinc   1195983 Nov 27 22:39 log.47556149._001931.job.log.tgz.1
[2025-11-27 22:40:36] -rw------- 1 boinc boinc      8558 Nov 27 22:39 heartbeat.json
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc        28 Nov 27 22:40 wrapper_checkpoint.txt
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc      8192 Nov 27 22:40 boinc_mmap_file
[2025-11-27 22:40:36] -rw------- 1 boinc boinc        95 Nov 27 22:40 pilot_heartbeat.json
[2025-11-27 22:40:36] -rw------- 1 boinc boinc      4824 Nov 27 22:40 pilotlog.txt
[2025-11-27 22:40:36] -rw------- 1 boinc boinc   4408069 Nov 27 22:40 log.47556149._001931.job.log.1
[2025-11-27 22:40:36] -rw------- 1 boinc boinc       353 Nov 27 22:40 output.list
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc       620 Nov 27 22:40 runtime_log
[2025-11-27 22:40:36] -rw------- 1 boinc boinc   5621760 Nov 27 22:40 result.tar.gz
[2025-11-27 22:40:36] -rw------- 1 boinc boinc       665 Nov 27 22:40 wPfMDmoqZh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzJLKDmtwwDim.diag
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc      8898 Nov 27 22:40 runtime_log.err
[2025-11-27 22:40:36] -rw-r--r-- 1 boinc boinc      9843 Nov 27 22:40 stderr.txt
[2025-11-27 22:40:36] HITS file was successfully produced:
[2025-11-27 22:40:36] -rw------- 1 boinc boinc 914574754 Nov 27 22:39 shared/HITS.pool.root.1
[2025-11-27 22:40:36]  *** Contents of shared directory: ***
[2025-11-27 22:40:36] total 1300644
[2025-11-27 22:40:36] -rw-r--r-- 2 boinc boinc 411039245 Nov 27 13:57 ATLAS.root_0
[2025-11-27 22:40:36] -rw-r--r-- 2 boinc boinc    590104 Nov 27 13:57 input.tar.gz
[2025-11-27 22:40:36] -rw-r--r-- 2 boinc boinc     15847 Nov 27 13:57 start_atlas.sh
[2025-11-27 22:40:36] -rw------- 1 boinc boinc 914574754 Nov 27 22:39 HITS.pool.root.1
[2025-11-27 22:40:36] -rw------- 1 boinc boinc   5621760 Nov 27 22:40 result.tar.gz
22:40:37 (1282833): run_atlas exited; CPU time 92528.291272
22:40:37 (1282833): called boinc_finish(0)

</stderr_txt>
]]>

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