Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:38:54 (21807): wrapper (7.7.26015): starting
08:38:54 (21807): wrapper: running run_atlas (--nthreads 8)
[2025-11-27 08:38:54] Arguments: --nthreads 8
[2025-11-27 08:38:54] Threads: 8
[2025-11-27 08:38:54] Checking for CVMFS
[2025-11-27 08:38:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 08:38:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 08:38:55] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 08:38:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 08:38:57] 2.11.2.0 22385 286540 142156 153353 1 18 15586736 25165824 1350 130560 9 157405168 99.883 82365967 3023 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-11-27 08:38:57] CVMFS is ok
[2025-11-27 08:38:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 08:38:57] Checking for apptainer binary...
[2025-11-27 08:38:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 08:38:57] Running /usr/bin/apptainer --version
[2025-11-27 08:38:57] apptainer version 1.3.2-1.el7
[2025-11-27 08:38:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 08:39:13] cg-vwn497.simple-grid.lan
[2025-11-27 08:39:13] apptainer works
[2025-11-27 08:39:13] Set ATHENA_PROC_NUMBER=8
[2025-11-27 08:39:13] Set ATHENA_CORE_NUMBER=8
[2025-11-27 08:39:13] Starting ATLAS job with PandaID=6895375689
[2025-11-27 08:39:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 05:19:49]  *** The last 200 lines of the pilot log: ***
[2025-11-28 05:19:49] 2025-11-28 04:18:49,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:19:49] 2025-11-28 04:18:50,576 | INFO     | time since job start (74179s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:18:52,394 | INFO     | monitor loop #5031: job 0:6895375689 is in state 'finished'
[2025-11-28 05:19:49] 2025-11-28 04:18:52,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:19:49] 2025-11-28 04:18:52,586 | INFO     | time since job start (74181s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:18:54,594 | INFO     | time since job start (74183s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:18:54,900 | INFO     | monitor loop #5032: job 0:6895375689 is in state 'finished'
[2025-11-28 05:19:49] 2025-11-28 04:18:54,900 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:19:49] 2025-11-28 04:18:56,601 | INFO     | time since job start (74185s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:18:57,405 | INFO     | monitor loop #5033: job 0:6895375689 is in state 'finished'
[2025-11-28 05:19:49] 2025-11-28 04:18:57,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:19:49] 2025-11-28 04:18:58,609 | INFO     | time since job start (74187s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:18:59,910 | INFO     | monitor loop #5034: job 0:6895375689 is in state 'finished'
[2025-11-28 05:19:49] 2025-11-28 04:18:59,910 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 05:19:49] 2025-11-28 04:19:00,616 | INFO     | time since job start (74189s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,001 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-28 05:19:49] 2025-11-28 04:19:02,002 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2025-11-28 05:19:49] 2025-11-28 04:19:02,004 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6895375689/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,005 | INFO     | extracted standard info from prmon json
[2025-11-28 05:19:49] 2025-11-28 04:19:02,005 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 05:19:49] 2025-11-28 04:19:02,005 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 05:19:49] 2025-11-28 04:19:02,034 | INFO     | fitting pss+swap vs Time
[2025-11-28 05:19:49] 2025-11-28 04:19:02,036 | INFO     | sum of square deviations: 545255211036.53864
[2025-11-28 05:19:49] 2025-11-28 04:19:02,102 | INFO     | sum of deviations: 2108461552448.2654
[2025-11-28 05:19:49] 2025-11-28 04:19:02,103 | INFO     | mean x: 1764266630.034797
[2025-11-28 05:19:49] 2025-11-28 04:19:02,103 | INFO     | mean y: 2827993.303231152
[2025-11-28 05:19:49] 2025-11-28 04:19:02,103 | INFO     | intersect: -6819460510.137703
[2025-11-28 05:19:49] 2025-11-28 04:19:02,104 | INFO     | chi2: 18.716550170082023
[2025-11-28 05:19:49] 2025-11-28 04:19:02,106 | INFO     | sum of square deviations: 538507456148.66296
[2025-11-28 05:19:49] 2025-11-28 04:19:02,152 | INFO     | sum of deviations: 2516531070693.132
[2025-11-28 05:19:49] 2025-11-28 04:19:02,152 | INFO     | mean x: 1764266477.5391016
[2025-11-28 05:19:49] 2025-11-28 04:19:02,152 | INFO     | mean y: 2837214.826955075
[2025-11-28 05:19:49] 2025-11-28 04:19:02,152 | INFO     | intersect: -8241860898.477894
[2025-11-28 05:19:49] 2025-11-28 04:19:02,154 | INFO     | chi2: 15.335556522483184
[2025-11-28 05:19:49] 2025-11-28 04:19:02,154 | INFO     | current chi2=15.335556522483184 (change=18.064192476043367 %)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,154 | INFO     | right removable region: 1201
[2025-11-28 05:19:49] 2025-11-28 04:19:02,156 | INFO     | sum of square deviations: 538506694258.66327
[2025-11-28 05:19:49] 2025-11-28 04:19:02,213 | INFO     | sum of deviations: 1620882046677.8218
[2025-11-28 05:19:49] 2025-11-28 04:19:02,213 | INFO     | mean x: 1764266782.5391016
[2025-11-28 05:19:49] 2025-11-28 04:19:02,213 | INFO     | mean y: 2839009.8336106488
[2025-11-28 05:19:49] 2025-11-28 04:19:02,214 | INFO     | intersect: -5307528314.948573
[2025-11-28 05:19:49] 2025-11-28 04:19:02,215 | INFO     | chi2: 14.350349818224073
[2025-11-28 05:19:49] 2025-11-28 04:19:02,215 | INFO     | current chi2=14.350349818224073 (change=23.328018850595775 %)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,215 | INFO     | left removable region: 10
[2025-11-28 05:19:49] 2025-11-28 04:19:02,217 | INFO     | sum of square deviations: 523857340415.17566
[2025-11-28 05:19:49] 2025-11-28 04:19:02,281 | INFO     | sum of deviations: 1747018214815.951
[2025-11-28 05:19:49] 2025-11-28 04:19:02,281 | INFO     | mean x: 1764266752.0486987
[2025-11-28 05:19:49] 2025-11-28 04:19:02,281 | INFO     | mean y: 2859139.293870697
[2025-11-28 05:19:49] 2025-11-28 04:19:02,282 | INFO     | intersect: -5880815506.136305
[2025-11-28 05:19:49] 2025-11-28 04:19:02,283 | INFO     | chi2: 7.500025849586749
[2025-11-28 05:19:49] 2025-11-28 04:19:02,283 | INFO     | current memory leak: 3.33 B/s (using 1191 data points, chi2=7.50)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,284 | INFO     | could have reported an average CPU frequency of 2249 MHz (41 samples)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | ..............................
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . Timing measurements:
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . get job = 0 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . initial setup = 5 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . payload setup = 132 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . stage-in = 0 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . payload execution = 73747 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,285 | INFO     | . stage-out = 5 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,286 | INFO     | . log creation = 1 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,286 | INFO     | ..............................
[2025-11-28 05:19:49] 2025-11-28 04:19:02,414 | INFO     | 
[2025-11-28 05:19:49] 2025-11-28 04:19:02,414 | INFO     | job summary report
[2025-11-28 05:19:49] 2025-11-28 04:19:02,414 | INFO     | --------------------------------------------------
[2025-11-28 05:19:49] 2025-11-28 04:19:02,414 | INFO     | PanDA job id: 6895375689
[2025-11-28 05:19:49] 2025-11-28 04:19:02,414 | INFO     | task id: 47556137
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | errors: (none)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | pilot state: finished 
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | transexitcode: 0
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | exeerrorcode: 0
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | exeerrordiag: 
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | exitcode: 0
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | exitmsg: OK
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | cpuconsumptiontime: 276665 s
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | nevents: 1000
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | neventsw: 0
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | pid: 32189
[2025-11-28 05:19:49] 2025-11-28 04:19:02,415 | INFO     | pgrp: 32189
[2025-11-28 05:19:49] 2025-11-28 04:19:02,416 | INFO     | corecount: 8
[2025-11-28 05:19:49] 2025-11-28 04:19:02,416 | INFO     | event service: False
[2025-11-28 05:19:49] 2025-11-28 04:19:02,416 | INFO     | sizes: {0: 2284089, 1: 2284173, 2: 2284344, 12: 2284372, 23: 2284400, 34: 2284428, 45: 2284584, 55: 2284612, 66: 2284640, 77: 2284668, 87: 2284724, 98: 2285032, 99
[2025-11-28 05:19:49] 2025-11-28 04:19:02,416 | INFO     | --------------------------------------------------
[2025-11-28 05:19:49] 2025-11-28 04:19:02,416 | INFO     | 
[2025-11-28 05:19:49] 2025-11-28 04:19:02,416 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-11-28 05:19:49] 2025-11-28 04:19:02,623 | INFO     | time since job start (74191s) is within the limit (172800.0s)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,843 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,844 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | job 6895375689 has completed (purged errors)
[2025-11-28 05:19:49] 2025-11-28 04:19:02,845 | INFO     | overall cleanup function is called
[2025-11-28 05:19:49] 2025-11-28 04:19:03,860 | INFO     | --- collectZombieJob: --- 10, [32189]
[2025-11-28 05:19:49] 2025-11-28 04:19:03,860 | INFO     | zombie collector waiting for pid 32189
[2025-11-28 05:19:49] 2025-11-28 04:19:03,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 05:19:49] 2025-11-28 04:19:03,860 | INFO     | collected zombie processes
[2025-11-28 05:19:49] 2025-11-28 04:19:03,860 | INFO     | will attempt to kill all subprocesses of pid=32189
[2025-11-28 05:19:49] 2025-11-28 04:19:03,967 | INFO     | process IDs to be killed: [32189] (in reverse order)
[2025-11-28 05:19:49] 2025-11-28 04:19:05,005 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 05:19:49] 2025-11-28 04:19:05,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 05:19:49] 2025-11-28 04:19:05,008 | INFO     | did not find any defunct processes belonging to 32189
[2025-11-28 05:19:49] 2025-11-28 04:19:05,014 | INFO     | did not find any defunct processes belonging to 32189
[2025-11-28 05:19:49] 2025-11-28 04:19:05,018 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 05:19:49] 2025-11-28 04:19:05,018 | INFO     | ready for new job
[2025-11-28 05:19:49] 2025-11-28 04:19:05,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 05:19:49] 2025-11-28 04:19:05,023 | INFO     | ***************************************
[2025-11-28 05:19:49] 2025-11-28 04:19:05,023 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 05:19:49] 2025-11-28 04:19:05,023 | INFO     | ***************************************
[2025-11-28 05:19:49] 2025-11-28 04:19:05,023 | INFO     | 
[2025-11-28 05:19:49] 2025-11-28 04:19:05,023 | INFO     | pilot is running in a VM
[2025-11-28 05:19:49] 2025-11-28 04:19:05,023 | INFO     | architecture information:
[2025-11-28 05:19:49] 2025-11-28 04:19:05,026 | INFO     | executing command: cat /etc/os-release
[2025-11-28 05:19:49] 2025-11-28 04:19:05,227 | INFO     | cat /etc/os-release:
[2025-11-28 05:19:49] NAME="CentOS Linux"
[2025-11-28 05:19:49] VERSION="7 (Core)"
[2025-11-28 05:19:49] ID="centos"
[2025-11-28 05:19:49] ID_LIKE="rhel fedora"
[2025-11-28 05:19:49] VERSION_ID="7"
[2025-11-28 05:19:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 05:19:49] ANSI_COLOR="0;31"
[2025-11-28 05:19:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 05:19:49] HOME_URL="https://www.centos.org/"
[2025-11-28 05:19:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 05:19:49] 
[2025-11-28 05:19:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 05:19:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 05:19:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 05:19:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 05:19:49] 
[2025-11-28 05:19:49] 2025-11-28 04:19:05,228 | INFO     | ***************************************
[2025-11-28 05:19:49] 2025-11-28 04:19:05,731 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-11-28 05:19:49] 2025-11-28 04:19:05,992 | INFO     | sufficient remaining disk space (496293117952 B)
[2025-11-28 05:19:49] 2025-11-28 04:19:05,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 05:19:49] 2025-11-28 04:19:05,993 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 05:19:49] 2025-11-28 04:19:05,993 | INFO     | update_server=False
[2025-11-28 05:19:49] 2025-11-28 04:19:05,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 05:19:49] 2025-11-28 04:19:05,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 05:19:49] 2025-11-28 04:19:05,994 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:19:49] 2025-11-28 04:19:05,994 | INFO     | aborting loop
[2025-11-28 05:19:49] 2025-11-28 04:19:06,624 | INFO     | all job control threads have been joined
[2025-11-28 05:19:49] 2025-11-28 04:19:06,648 | INFO     | all payload control threads have been joined
[2025-11-28 05:19:49] 2025-11-28 04:19:06,735 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 05:19:49] 2025-11-28 04:19:06,999 | INFO     | [job] retrieve thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:07,000 | INFO     | [job] job monitor thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:07,027 | INFO     | all data control threads have been joined
[2025-11-28 05:19:49] 2025-11-28 04:19:07,086 | INFO     | [job] validate thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:07,251 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:07,435 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 05:19:49] 2025-11-28 04:19:07,630 | INFO     | [job] control thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:07,654 | INFO     | [payload] control thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:07,731 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,033 | INFO     | [data] control thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,056 | INFO     | [payload] failed_post thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,070 | INFO     | [data] copytool_in thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,339 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,419 | INFO     | [payload] validate_post thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,441 | INFO     | [job] queue monitor thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:08,742 | INFO     | [data] copytool_out thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:10,002 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 05:19:49] 2025-11-28 04:19:35,842 | INFO     | PID=25625 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-28 05:19:49] 2025-11-28 04:19:35,843 | INFO     | .. there are 9 such processes running
[2025-11-28 05:19:49] 2025-11-28 04:19:35,844 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 05:19:49] 2025-11-28 04:19:35,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 05:19:49] 2025-11-28 04:19:35,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 05:19:49] 2025-11-28 04:19:40,572 | INFO     | [monitor] cgroup control has ended
[2025-11-28 05:19:49] 2025-11-28 04:19:41,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701469574976)>', '<ExcThread(monitor, started 139701025486592)>']
[2025-11-28 05:19:49] 2025-11-28 04:19:42,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 05:19:49] 2025-11-28 04:19:42,886 | INFO     | [monitor] control thread has ended
[2025-11-28 05:19:49] 2025-11-28 04:19:47,016 | INFO     | all workflow threads have been joined
[2025-11-28 05:19:49] 2025-11-28 04:19:47,016 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 05:19:49] 2025-11-28 04:19:47,016 | INFO     | traces error code: 0
[2025-11-28 05:19:49] 2025-11-28 04:19:47,017 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 05:19:49] 2025-11-28 04:19:47,296 [wrapper] ==== pilot stdout END ====
[2025-11-28 05:19:49] 2025-11-28 04:19:47,358 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 05:19:49] 2025-11-28 04:19:47,423 [wrapper] pilotpid: 25625
[2025-11-28 05:19:49] 2025-11-28 04:19:47,529 [wrapper] Pilot exit status: 0
[2025-11-28 05:19:49] 2025-11-28 04:19:47,779 [wrapper] pandaids: 6895375689
[2025-11-28 05:19:49] 2025-11-28 04:19:47,913 [wrapper] cleanup supervisor_pilot 19630 25626
[2025-11-28 05:19:49] 2025-11-28 04:19:47,997 [wrapper] Test setup, not cleaning
[2025-11-28 05:19:49] 2025-11-28 04:19:48,080 [wrapper] apfmon messages muted
[2025-11-28 05:19:49] 2025-11-28 04:19:48,216 [wrapper] ==== wrapper stdout END ====
[2025-11-28 05:19:49] 2025-11-28 04:19:48,291 [wrapper] ==== wrapper stderr END ====
[2025-11-28 05:19:49]  *** Error codes and diagnostics ***
[2025-11-28 05:19:49]     "exeErrorCode": 0,
[2025-11-28 05:19:49]     "exeErrorDiag": "",
[2025-11-28 05:19:49]     "pilotErrorCode": 0,
[2025-11-28 05:19:49]     "pilotErrorDiag": "",
[2025-11-28 05:19:49]  *** Listing of results directory ***
[2025-11-28 05:19:49] total 1299788
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc    576529 Nov 24 00:11 pilot3.tar.gz
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc      5112 Nov 24 01:02 queuedata.json
[2025-11-28 05:19:49] -rwx------. 1 boinc boinc     36292 Nov 24 01:02 runpilot2-wrapper.sh
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc       100 Nov 27 08:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 05:19:49] -rwxr-xr-x. 1 boinc boinc      7986 Nov 27 08:38 run_atlas
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc       105 Nov 27 08:38 job.xml
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc      6392 Nov 27 08:38 init_data.xml
[2025-11-28 05:19:49] -rw-r--r--. 2 boinc boinc 409491341 Nov 27 08:38 EVNT.47483658._000955.pool.root.1
[2025-11-28 05:19:49] -rw-r--r--. 2 boinc boinc     15847 Nov 27 08:38 start_atlas.sh
[2025-11-28 05:19:49] drwxrwx--x. 2 boinc boinc        68 Nov 27 08:38 shared
[2025-11-28 05:19:49] -rw-r--r--. 2 boinc boinc    590105 Nov 27 08:38 input.tar.gz
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc         0 Nov 27 08:38 boinc_lockfile
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc      2786 Nov 27 08:39 pandaJob.out
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc    991570 Nov 27 08:42 agis_schedconf.cvmfs.json
[2025-11-28 05:19:49] drwx------. 5 boinc boinc      4096 Nov 27 08:42 pilot3
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc       533 Nov 28 04:54 boinc_task_state.xml
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc 893067345 Nov 28 05:16 HITS.47556137._009420.pool.root.1
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc      1030 Nov 28 05:17 memory_monitor_summary.json
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc   1516240 Nov 28 05:17 agis_ddmendpoints.agis.ALL.json
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc   2332481 Nov 28 05:17 log.47556137._009420.job.log.tgz.1
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc      8629 Nov 28 05:19 heartbeat.json
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc        95 Nov 28 05:19 pilot_heartbeat.json
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc        29 Nov 28 05:19 wrapper_checkpoint.txt
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc      8192 Nov 28 05:19 boinc_mmap_file
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc      4885 Nov 28 05:19 pilotlog.txt
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc   9924065 Nov 28 05:19 log.47556137._009420.job.log.1
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc       353 Nov 28 05:19 output.list
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc       620 Nov 28 05:19 runtime_log
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc  12277760 Nov 28 05:19 result.tar.gz
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc      8833 Nov 28 05:19 runtime_log.err
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc       661 Nov 28 05:19 hRQODmsDZh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZqIKDm1DT8Tn.diag
[2025-11-28 05:19:49] -rw-r--r--. 1 boinc boinc     21451 Nov 28 05:19 stderr.txt
[2025-11-28 05:19:49] HITS file was successfully produced:
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc 893067345 Nov 28 05:16 shared/HITS.pool.root.1
[2025-11-28 05:19:49]  *** Contents of shared directory: ***
[2025-11-28 05:19:49] total 1284624
[2025-11-28 05:19:49] -rw-r--r--. 2 boinc boinc 409491341 Nov 27 08:38 ATLAS.root_0
[2025-11-28 05:19:49] -rw-r--r--. 2 boinc boinc     15847 Nov 27 08:38 start_atlas.sh
[2025-11-28 05:19:49] -rw-r--r--. 2 boinc boinc    590105 Nov 27 08:38 input.tar.gz
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc 893067345 Nov 28 05:16 HITS.pool.root.1
[2025-11-28 05:19:49] -rw-------. 1 boinc boinc  12277760 Nov 28 05:19 result.tar.gz
05:19:51 (21807): run_atlas exited; CPU time 277103.299830
05:19:51 (21807): called boinc_finish(0)

</stderr_txt>
]]>

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