Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
03:36:24 (28357): wrapper (7.7.26015): starting
03:36:24 (28357): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 03:36:24] Arguments: --nthreads 8
[2025-11-25 03:36:24] Threads: 8
[2025-11-25 03:36:24] Checking for CVMFS
[2025-11-25 03:36:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 03:36:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 03:36:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 03:36:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 03:36:25] 2.11.0.0 4170 64057 97400 153266 3 1 3720267 4096001 0 130560 5 3598895 99.214 5944394 632 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-11-25 03:36:25] CVMFS is ok
[2025-11-25 03:36:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 03:36:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 03:36:25] Further information can be found at the LHC@home message board.
[2025-11-25 03:36:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 03:36:25] Checking for apptainer binary...
[2025-11-25 03:36:25] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-11-25 03:36:25] apptainer is not installed, using version from CVMFS
[2025-11-25 03:36:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 03:36:25] WARNING: Environment variable TMPDIR already has value [/tmp/job_10923351/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node340
[2025-11-25 03:36:25] apptainer works
[2025-11-25 03:36:25] Set ATHENA_PROC_NUMBER=8
[2025-11-25 03:36:25] Set ATHENA_CORE_NUMBER=8
[2025-11-25 03:36:25] Starting ATLAS job with PandaID=6894053094
[2025-11-25 03:36:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10923351/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 05:06:00]  *** The last 200 lines of the pilot log: ***
[2025-11-25 05:06:00]  replicas=None
[2025-11-25 05:06:00]  scope=mc23_13p6TeV
[2025-11-25 05:06:00]  status=None
[2025-11-25 05:06:00]  status_code=0
[2025-11-25 05:06:00]  storage_token=
[2025-11-25 05:06:00]  surl=/tmp/job_10923351/atlas/pilot/slots/0/PanDA_Pilot-6894053094/log.47523618._000040.job.log.tgz.1
[2025-11-25 05:06:00]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/99/log.47523618._000040.job.log.tgz.1
[2025-11-25 05:06:00]  workdir=None
[2025-11-25 05:06:00] ]
[2025-11-25 05:06:00] 2025-11-25 04:05:24,996 | INFO     | transferring file log.47523618._000040.job.log.tgz.1 from /tmp/job_10923351/atlas/pilot/slots/0/PanDA_Pilot-6894053094/log.47523618._000040.job.log.tgz.1 to /tmp/j
[2025-11-25 05:06:00] 2025-11-25 04:05:24,996 | INFO     | executing command: /usr/bin/env mv /tmp/job_10923351/atlas/pilot/slots/0/PanDA_Pilot-6894053094/log.47523618._000040.job.log.tgz.1 /tmp/job_10923351/atlas/pilot/sl
[2025-11-25 05:06:00] 2025-11-25 04:05:25,004 | INFO     | adding to output.list: log.47523618._000040.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1b/99/log.47523618._000040.job.log.tg
[2025-11-25 05:06:00] 2025-11-25 04:05:25,004 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-11-25 05:06:00] 2025-11-25 04:05:25,004 | INFO     | summary of transferred files:
[2025-11-25 05:06:00] 2025-11-25 04:05:25,004 | INFO     |  -- lfn=log.47523618._000040.job.log.tgz.1, status_code=0, status=transferred
[2025-11-25 05:06:00] 2025-11-25 04:05:25,004 | INFO     | stage-out finished correctly
[2025-11-25 05:06:00] 2025-11-25 04:05:25,005 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:06:00] 2025-11-25 04:05:25,261 | INFO     | time since job start (5335s) is within the limit (172800.0s)
[2025-11-25 05:06:00] 2025-11-25 04:05:25,919 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-25 05:06:00] 2025-11-25 04:05:25,969 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:06:00] 2025-11-25 04:05:25,969 | INFO     | job 6894053094 has state=finished
[2025-11-25 05:06:00] 2025-11-25 04:05:25,969 | INFO     | preparing for final server update for job 6894053094 in state='finished'
[2025-11-25 05:06:00] 2025-11-25 04:05:26,520 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-11-25 05:06:00] 2025-11-25 04:05:26,521 | INFO     | this job has now completed (state=finished)
[2025-11-25 05:06:00] 2025-11-25 04:05:26,521 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-25 05:06:00] 2025-11-25 04:05:26,521 | INFO     | log transfer has been attempted: DONE
[2025-11-25 05:06:00] 2025-11-25 04:05:26,521 | INFO     | job 6894053094 has finished - writing final server update
[2025-11-25 05:06:00] 2025-11-25 04:05:26,521 | INFO     | total number of processed events: 400 (read)
[2025-11-25 05:06:00] 2025-11-25 04:05:26,521 | INFO     | executing command: lscpu
[2025-11-25 05:06:00] 2025-11-25 04:05:26,553 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-25 05:06:00] 2025-11-25 04:05:27,267 | INFO     | time since job start (5337s) is within the limit (172800.0s)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,067 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-25 05:06:00] 2025-11-25 04:05:28,071 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2892.8438750000005
[2025-11-25 05:06:00] 2025-11-25 04:05:28,076 | INFO     | using path: /tmp/job_10923351/atlas/pilot/slots/0/PanDA_Pilot-6894053094/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,077 | INFO     | extracted standard info from prmon json
[2025-11-25 05:06:00] 2025-11-25 04:05:28,077 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 05:06:00] 2025-11-25 04:05:28,077 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 05:06:00] 2025-11-25 04:05:28,077 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 05:06:00] 2025-11-25 04:05:28,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 05:06:00] 2025-11-25 04:05:28,078 | INFO     | fitting pss+swap vs Time
[2025-11-25 05:06:00] 2025-11-25 04:05:28,078 | INFO     | sum of square deviations: 164765880.0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,078 | INFO     | sum of deviations: -16093172072.999998
[2025-11-25 05:06:00] 2025-11-25 04:05:28,078 | INFO     | mean x: 1764040954.0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,078 | INFO     | mean y: 2763699.111111111
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | intersect: 172301874513.444
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | chi2: 0.13819039080056825
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | current memory leak: -97.67 B/s (using 81 data points, chi2=0.14)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | could have reported an average CPU frequency of 2512 MHz (6 samples)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | ..............................
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . Timing measurements:
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . get job = 0 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . initial setup = 1 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . payload setup = 2 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . stage-in = 0 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . payload execution = 5315 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . stage-out = 0 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | . log creation = 0 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,079 | INFO     | ..............................
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | 
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | job summary report
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | --------------------------------------------------
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | PanDA job id: 6894053094
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | task id: 47523618
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | errors: (none)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | pilot state: finished 
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | transexitcode: 0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | exeerrorcode: 0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,268 | INFO     | exeerrordiag: 
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | exitcode: 0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | exitmsg: OK
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | cpuconsumptiontime: 35899 s
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | nevents: 400
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | neventsw: 0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | pid: 9115
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | pgrp: 9115
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | corecount: 8
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | event service: False
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | sizes: {0: 2284067, 2: 2284329, 11: 2284357, 5321: 2311010, 5322: 2320038, 5323: 2320094, 5325: 2320416}
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | --------------------------------------------------
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | 
[2025-11-25 05:06:00] 2025-11-25 04:05:28,269 | INFO     | executing command: ls -lF /tmp/job_10923351/atlas/pilot/slots/0
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | job 6894053094 has completed (purged errors)
[2025-11-25 05:06:00] 2025-11-25 04:05:28,279 | INFO     | overall cleanup function is called
[2025-11-25 05:06:00] 2025-11-25 04:05:29,285 | INFO     | --- collectZombieJob: --- 10, [9115]
[2025-11-25 05:06:00] 2025-11-25 04:05:29,285 | INFO     | zombie collector waiting for pid 9115
[2025-11-25 05:06:00] 2025-11-25 04:05:29,285 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 05:06:00] 2025-11-25 04:05:29,285 | INFO     | collected zombie processes
[2025-11-25 05:06:00] 2025-11-25 04:05:29,285 | INFO     | will attempt to kill all subprocesses of pid=9115
[2025-11-25 05:06:00] 2025-11-25 04:05:29,398 | INFO     | process IDs to be killed: [9115] (in reverse order)
[2025-11-25 05:06:00] 2025-11-25 04:05:29,437 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 05:06:00] 2025-11-25 04:05:29,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 05:06:00] 2025-11-25 04:05:29,443 | INFO     | did not find any defunct processes belonging to 9115
[2025-11-25 05:06:00] 2025-11-25 04:05:29,446 | INFO     | did not find any defunct processes belonging to 9115
[2025-11-25 05:06:00] 2025-11-25 04:05:29,447 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 05:06:00] 2025-11-25 04:05:29,447 | INFO     | ready for new job
[2025-11-25 05:06:00] 2025-11-25 04:05:29,447 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 05:06:00] 2025-11-25 04:05:29,448 | INFO     | ***************************************
[2025-11-25 05:06:00] 2025-11-25 04:05:29,448 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 05:06:00] 2025-11-25 04:05:29,448 | INFO     | ***************************************
[2025-11-25 05:06:00] 2025-11-25 04:05:29,448 | INFO     | 
[2025-11-25 05:06:00] 2025-11-25 04:05:29,462 | INFO     | architecture information:
[2025-11-25 05:06:00] 2025-11-25 04:05:29,462 | INFO     | executing command: cat /etc/os-release
[2025-11-25 05:06:00] 2025-11-25 04:05:29,468 | INFO     | cat /etc/os-release:
[2025-11-25 05:06:00] NAME="CentOS Linux"
[2025-11-25 05:06:00] VERSION="7 (Core)"
[2025-11-25 05:06:00] ID="centos"
[2025-11-25 05:06:00] ID_LIKE="rhel fedora"
[2025-11-25 05:06:00] VERSION_ID="7"
[2025-11-25 05:06:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 05:06:00] ANSI_COLOR="0;31"
[2025-11-25 05:06:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 05:06:00] HOME_URL="https://www.centos.org/"
[2025-11-25 05:06:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 05:06:00] 
[2025-11-25 05:06:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 05:06:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 05:06:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 05:06:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 05:06:00] 
[2025-11-25 05:06:00] 2025-11-25 04:05:29,468 | INFO     | ***************************************
[2025-11-25 05:06:00] 2025-11-25 04:05:29,971 | INFO     | executing command: df -mP /tmp/job_10923351/atlas/pilot/slots/0
[2025-11-25 05:06:00] 2025-11-25 04:05:29,976 | INFO     | sufficient remaining disk space (222591713280 B)
[2025-11-25 05:06:00] 2025-11-25 04:05:29,976 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 05:06:00] 2025-11-25 04:05:29,976 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 05:06:00] 2025-11-25 04:05:29,976 | INFO     | update_server=False
[2025-11-25 05:06:00] 2025-11-25 04:05:29,976 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 05:06:00] 2025-11-25 04:05:29,976 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:06:00] 2025-11-25 04:05:30,184 | INFO     | all data control threads have been joined
[2025-11-25 05:06:00] 2025-11-25 04:05:30,380 | INFO     | all job control threads have been joined
[2025-11-25 05:06:00] 2025-11-25 04:05:30,543 | INFO     | all payload control threads have been joined
[2025-11-25 05:06:00] 2025-11-25 04:05:30,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 05:06:00] 2025-11-25 04:05:30,979 | INFO     | [job] queue monitor thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:30,981 | INFO     | [job] retrieve thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,189 | INFO     | [data] control thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,385 | INFO     | [job] control thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,385 | WARNING  | process 9115 can no longer be monitored (due to stat problems) - aborting
[2025-11-25 05:06:00] 2025-11-25 04:05:31,431 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,472 | INFO     | using path: /tmp/job_10923351/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 05:06:00] 2025-11-25 04:05:31,480 | INFO     | [job] validate thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,536 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,548 | INFO     | [payload] control thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,551 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,580 | INFO     | number of running child processes to parent process 9115: 1
[2025-11-25 05:06:00] 2025-11-25 04:05:31,580 | INFO     | maximum number of monitored processes: 6
[2025-11-25 05:06:00] 2025-11-25 04:05:31,580 | INFO     | aborting job monitoring since job object (job id=6894053094) has expired
[2025-11-25 05:06:00] 2025-11-25 04:05:31,580 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 05:06:00] 2025-11-25 04:05:31,580 | INFO     | will abort loop
[2025-11-25 05:06:00] 2025-11-25 04:05:31,850 | INFO     | [payload] failed_post thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,974 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 05:06:00] 2025-11-25 04:05:31,984 | INFO     | [payload] validate_post thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:31,999 | INFO     | [data] copytool_in thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:32,470 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:32,564 | INFO     | [data] copytool_out thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:32,585 | INFO     | [job] job monitor thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:35,980 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 05:06:00] 2025-11-25 04:05:39,016 | INFO     | [monitor] cgroup control has ended
[2025-11-25 05:06:00] 2025-11-25 04:05:40,785 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2025-11-25 05:06:00] 2025-11-25 04:05:45,811 | INFO     | all workflow threads have been joined
[2025-11-25 05:06:00] 2025-11-25 04:05:45,811 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 05:06:00] 2025-11-25 04:05:45,811 | INFO     | traces error code: 0
[2025-11-25 05:06:00] 2025-11-25 04:05:45,811 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 05:06:00] 2025-11-25 04:06:00,467 | INFO     | PID=730 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2025-11-25 05:06:00] 2025-11-25 04:06:00,467 | INFO     | .. there are 6 such processes running
[2025-11-25 05:06:00] 2025-11-25 04:06:00,467 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 05:06:00] 2025-11-25 04:06:00,467 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 05:06:00] 2025-11-25 04:06:00,467 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 05:06:00] 2025-11-25 04:06:00,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 05:06:00] 2025-11-25 04:06:00,468 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 05:06:00] 2025-11-25 04:06:00,468 | INFO     | [monitor] control thread has ended
[2025-11-25 05:06:00] 2025-11-25 04:06:00,521 [wrapper] ==== pilot stdout END ====
[2025-11-25 05:06:00] 2025-11-25 04:06:00,523 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 05:06:00] 2025-11-25 04:06:00,524 [wrapper] pilotpid: 730
[2025-11-25 05:06:00] 2025-11-25 04:06:00,525 [wrapper] Pilot exit status: 0
[2025-11-25 05:06:00] 2025-11-25 04:06:00,529 [wrapper] pandaids: 6894053094
[2025-11-25 05:06:00] 2025-11-25 04:06:00,556 [wrapper] cleanup supervisor_pilot  9918 731
[2025-11-25 05:06:00] 2025-11-25 04:06:00,558 [wrapper] Test setup, not cleaning
[2025-11-25 05:06:00] 2025-11-25 04:06:00,559 [wrapper] apfmon messages muted
[2025-11-25 05:06:00] 2025-11-25 04:06:00,560 [wrapper] ==== wrapper stdout END ====
[2025-11-25 05:06:00] 2025-11-25 04:06:00,560 [wrapper] ==== wrapper stderr END ====
[2025-11-25 05:06:00]  *** Error codes and diagnostics ***
[2025-11-25 05:06:00]     "exeErrorCode": 0,
[2025-11-25 05:06:00]     "exeErrorDiag": "",
[2025-11-25 05:06:00]     "pilotErrorCode": 0,
[2025-11-25 05:06:00]     "pilotErrorDiag": "",
[2025-11-25 05:06:00]  *** Listing of results directory ***
[2025-11-25 05:06:00] total 601120
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user    576529 Nov 23 15:16 pilot3.tar.gz
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      5112 Nov 23 15:41 queuedata.json
[2025-11-25 05:06:00] -rwx------ 1 mf493845 unix-user     36292 Nov 23 15:42 runpilot2-wrapper.sh
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user       100 Nov 25 02:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 05:06:00] -rwxr-xr-x 1 mf493845 unix-user      7986 Nov 25 02:18 run_atlas
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user       105 Nov 25 02:18 job.xml
[2025-11-25 05:06:00] -rw-r--r-- 2 mf493845 unix-user 307735345 Nov 25 03:36 EVNT.47523616._000002.pool.root.1
[2025-11-25 05:06:00] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 25 03:36 start_atlas.sh
[2025-11-25 05:06:00] drwxrwx--x 2 mf493845 unix-user       100 Nov 25 03:36 shared
[2025-11-25 05:06:00] -rw-r--r-- 2 mf493845 unix-user    589959 Nov 25 03:36 input.tar.gz
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      6395 Nov 25 03:36 init_data.xml
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user         0 Nov 25 03:36 boinc_setup_complete
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      8192 Nov 25 03:36 boinc_mmap_file
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user         0 Nov 25 03:36 boinc_lockfile
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      2611 Nov 25 03:36 pandaJob.out
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user    991801 Nov 25 03:36 agis_schedconf.cvmfs.json
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user   1516227 Nov 25 03:36 agis_ddmendpoints.agis.ALL.json
[2025-11-25 05:06:00] drwx------ 5 mf493845 unix-user       440 Nov 25 03:36 pilot3
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user 301692930 Nov 25 05:04 HITS.47523618._000040.pool.root.1
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user        95 Nov 25 05:05 pilot_heartbeat.json
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      1015 Nov 25 05:05 memory_monitor_summary.json
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user    338034 Nov 25 05:05 log.47523618._000040.job.log.tgz.1
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      7761 Nov 25 05:05 heartbeat.json
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user       888 Nov 25 05:06 pilotlog.txt
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user    781701 Nov 25 05:06 log.47523618._000040.job.log.1
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user       357 Nov 25 05:06 output.list
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user       620 Nov 25 05:06 runtime_log
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user   1136640 Nov 25 05:06 result.tar.gz
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user       646 Nov 25 05:06 vDQNDmwTQh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm6ZIKDmbYpgzn.diag
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user      9220 Nov 25 05:06 runtime_log.err
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user     22635 Nov 25 05:06 stderr.txt
[2025-11-25 05:06:00] HITS file was successfully produced:
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user 301692930 Nov 25 05:04 shared/HITS.pool.root.1
[2025-11-25 05:06:00]  *** Contents of shared directory: ***
[2025-11-25 05:06:00] total 596856
[2025-11-25 05:06:00] -rw-r--r-- 2 mf493845 unix-user 307735345 Nov 25 03:36 ATLAS.root_0
[2025-11-25 05:06:00] -rw-r--r-- 2 mf493845 unix-user     15847 Nov 25 03:36 start_atlas.sh
[2025-11-25 05:06:00] -rw-r--r-- 2 mf493845 unix-user    589959 Nov 25 03:36 input.tar.gz
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user 301692930 Nov 25 05:04 HITS.pool.root.1
[2025-11-25 05:06:00] -rw------- 1 mf493845 unix-user   1136640 Nov 25 05:06 result.tar.gz
05:06:02 (28357): run_atlas exited; CPU time 35964.323622
05:06:02 (28357): called boinc_finish(0)

</stderr_txt>
]]>

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