Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:13:24 (2017907): wrapper (7.7.26015): starting
23:13:24 (2017907): wrapper: running run_atlas (--nthreads 8)
[2025-11-24 23:13:24] Arguments: --nthreads 8
[2025-11-24 23:13:24] Threads: 8
[2025-11-24 23:13:24] Checking for CVMFS
[2025-11-24 23:13:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-24 23:13:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-24 23:13:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-24 23:13:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-24 23:13:27] 2.13.2.0 5745 31795 173880 153269 2 63 38602453 39288833 7990 16776704 0 20906360 99.639 17583408 36065 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-24 23:13:27] CVMFS is ok
[2025-11-24 23:13:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-24 23:13:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-24 23:13:27] Further information can be found at the LHC@home message board.
[2025-11-24 23:13:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-24 23:13:27] Checking for apptainer binary...
[2025-11-24 23:13:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-24 23:13:27] Running /usr/bin/apptainer --version
[2025-11-24 23:13:27] apptainer version 1.4.4-1.el9
[2025-11-24 23:13:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-24 23:13:27] c-211-4.aglt2.org
[2025-11-24 23:13:27] apptainer works
[2025-11-24 23:13:28] Set ATHENA_PROC_NUMBER=8
[2025-11-24 23:13:28] Set ATHENA_CORE_NUMBER=8
[2025-11-24 23:13:28] Starting ATLAS job with PandaID=6894053089
[2025-11-24 23:13:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 10:12:28]  *** The last 200 lines of the pilot log: ***
[2025-11-25 10:12:28] 2025-11-25 14:11:21,283 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1586250000005
[2025-11-25 10:12:28] 2025-11-25 14:11:21,290 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894053089/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,290 | INFO     | extracted standard info from prmon json
[2025-11-25 10:12:28] 2025-11-25 14:11:21,291 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 10:12:28] 2025-11-25 14:11:21,291 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 10:12:28] 2025-11-25 14:11:21,291 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 10:12:28] 2025-11-25 14:11:21,292 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 10:12:28] 2025-11-25 14:11:21,303 | INFO     | fitting pss+swap vs Time
[2025-11-25 10:12:28] 2025-11-25 14:11:21,304 | INFO     | sum of square deviations: 62076733548.65989
[2025-11-25 10:12:28] 2025-11-25 14:11:21,313 | INFO     | sum of deviations: 308747174304.0754
[2025-11-25 10:12:28] 2025-11-25 14:11:21,313 | INFO     | mean x: 1764061985.0478632
[2025-11-25 10:12:28] 2025-11-25 14:11:21,314 | INFO     | mean y: 2562516.14017094
[2025-11-25 10:12:28] 2025-11-25 14:11:21,314 | INFO     | intersect: -8771242451.44617
[2025-11-25 10:12:28] 2025-11-25 14:11:21,315 | INFO     | chi2: 4.7062034163043265
[2025-11-25 10:12:28] 2025-11-25 14:11:21,316 | INFO     | sum of square deviations: 60498714173.12244
[2025-11-25 10:12:28] 2025-11-25 14:11:21,324 | INFO     | sum of deviations: 344878293760.79
[2025-11-25 10:12:28] 2025-11-25 14:11:21,325 | INFO     | mean x: 1764061832.5568964
[2025-11-25 10:12:28] 2025-11-25 14:11:21,325 | INFO     | mean y: 2565981.127586207
[2025-11-25 10:12:28] 2025-11-25 14:11:21,325 | INFO     | intersect: -10053625182.866453
[2025-11-25 10:12:28] 2025-11-25 14:11:21,326 | INFO     | chi2: 3.971772518619296
[2025-11-25 10:12:28] 2025-11-25 14:11:21,326 | INFO     | current chi2=3.971772518619296 (change=15.605591869247382 %)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,326 | INFO     | right removable region: 579
[2025-11-25 10:12:28] 2025-11-25 14:11:21,327 | INFO     | sum of square deviations: 60498340243.122444
[2025-11-25 10:12:28] 2025-11-25 14:11:21,335 | INFO     | sum of deviations: 148383254773.4829
[2025-11-25 10:12:28] 2025-11-25 14:11:21,336 | INFO     | mean x: 1764062137.5568964
[2025-11-25 10:12:28] 2025-11-25 14:11:21,336 | INFO     | mean y: 2577994.379310345
[2025-11-25 10:12:28] 2025-11-25 14:11:21,336 | INFO     | intersect: -4324107341.804219
[2025-11-25 10:12:28] 2025-11-25 14:11:21,337 | INFO     | chi2: 2.054749452858323
[2025-11-25 10:12:28] 2025-11-25 14:11:21,337 | INFO     | current chi2=2.054749452858323 (change=56.33955290288173 %)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,338 | INFO     | sum of square deviations: 58946994949.74666
[2025-11-25 10:12:28] 2025-11-25 14:11:21,347 | INFO     | sum of deviations: 57285339288.9478
[2025-11-25 10:12:28] 2025-11-25 14:11:21,347 | INFO     | mean x: 1764062290.0626087
[2025-11-25 10:12:28] 2025-11-25 14:11:21,347 | INFO     | mean y: 2586945.834782609
[2025-11-25 10:12:28] 2025-11-25 14:11:21,347 | INFO     | intersect: -1711748227.6414201
[2025-11-25 10:12:28] 2025-11-25 14:11:21,348 | INFO     | chi2: 1.2608713231995923
[2025-11-25 10:12:28] 2025-11-25 14:11:21,348 | INFO     | current chi2=1.2608713231995923 (change=38.636249716693285 %)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,349 | INFO     | sum of square deviations: 57422394341.83164
[2025-11-25 10:12:28] 2025-11-25 14:11:21,357 | INFO     | sum of deviations: 13339002103.315788
[2025-11-25 10:12:28] 2025-11-25 14:11:21,358 | INFO     | mean x: 1764062442.5684211
[2025-11-25 10:12:28] 2025-11-25 14:11:21,358 | INFO     | mean y: 2591338.51754386
[2025-11-25 10:12:28] 2025-11-25 14:11:21,358 | INFO     | intersect: -407193605.17050743
[2025-11-25 10:12:28] 2025-11-25 14:11:21,359 | INFO     | chi2: 1.0691993454435387
[2025-11-25 10:12:28] 2025-11-25 14:11:21,359 | INFO     | current chi2=1.0691993454435387 (change=15.201549454679167 %)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,359 | INFO     | left removable region: 30
[2025-11-25 10:12:28] 2025-11-25 14:11:21,360 | INFO     | sum of square deviations: 51306200317.48978
[2025-11-25 10:12:28] 2025-11-25 14:11:21,368 | INFO     | sum of deviations: 4713171282.916237
[2025-11-25 10:12:28] 2025-11-25 14:11:21,368 | INFO     | mean x: 1764062717.100182
[2025-11-25 10:12:28] 2025-11-25 14:11:21,368 | INFO     | mean y: 2599925.8378870673
[2025-11-25 10:12:28] 2025-11-25 14:11:21,368 | INFO     | intersect: -159453192.26576433
[2025-11-25 10:12:28] 2025-11-25 14:11:21,369 | INFO     | chi2: 0.18026421445230253
[2025-11-25 10:12:28] 2025-11-25 14:11:21,369 | INFO     | current memory leak: 0.09 B/s (using 549 data points, chi2=0.18)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,370 | INFO     | could have reported an average CPU frequency of 2600 MHz (23 samples)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | ..............................
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . Timing measurements:
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . get job = 0 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . initial setup = 5 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . payload setup = 33 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . stage-in = 0 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . payload execution = 35703 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . stage-out = 4 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | . log creation = 0 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,371 | INFO     | ..............................
[2025-11-25 10:12:28] 2025-11-25 14:11:21,921 | INFO     | 
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | job summary report
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | --------------------------------------------------
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | PanDA job id: 6894053089
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | task id: 47523618
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | errors: (none)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | pilot state: finished 
[2025-11-25 10:12:28] 2025-11-25 14:11:21,922 | INFO     | transexitcode: 0
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | exeerrorcode: 0
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | exeerrordiag: 
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | exitcode: 0
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | exitmsg: OK
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | cpuconsumptiontime: 89331 s
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | nevents: 400
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | neventsw: 0
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | pid: 2042276
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | pgrp: 2042276
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | corecount: 8
[2025-11-25 10:12:28] 2025-11-25 14:11:21,923 | INFO     | event service: False
[2025-11-25 10:12:28] 2025-11-25 14:11:21,924 | INFO     | sizes: {0: 2283770, 1: 2283969, 2: 2283997, 13: 2283997, 24: 2284053, 28: 2284343, 35: 2284499, 35740: 2325200, 35741: 2325199, 35746: 2334258, 35748: 2334314, 357
[2025-11-25 10:12:28] 2025-11-25 14:11:21,924 | INFO     | --------------------------------------------------
[2025-11-25 10:12:28] 2025-11-25 14:11:21,924 | INFO     | 
[2025-11-25 10:12:28] 2025-11-25 14:11:21,924 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,945 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,946 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,947 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,947 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,947 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 10:12:28] 2025-11-25 14:11:21,947 | INFO     | job 6894053089 has completed (purged errors)
[2025-11-25 10:12:28] 2025-11-25 14:11:21,947 | INFO     | overall cleanup function is called
[2025-11-25 10:12:28] 2025-11-25 14:11:22,957 | INFO     | --- collectZombieJob: --- 10, [2042276]
[2025-11-25 10:12:28] 2025-11-25 14:11:22,957 | INFO     | zombie collector waiting for pid 2042276
[2025-11-25 10:12:28] 2025-11-25 14:11:22,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 10:12:28] 2025-11-25 14:11:22,957 | INFO     | collected zombie processes
[2025-11-25 10:12:28] 2025-11-25 14:11:22,958 | INFO     | will attempt to kill all subprocesses of pid=2042276
[2025-11-25 10:12:28] 2025-11-25 14:11:23,198 | INFO     | process IDs to be killed: [2042276] (in reverse order)
[2025-11-25 10:12:28] 2025-11-25 14:11:23,271 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 10:12:28] 2025-11-25 14:11:23,272 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 10:12:28] 2025-11-25 14:11:23,281 | INFO     | did not find any defunct processes belonging to 2042276
[2025-11-25 10:12:28] 2025-11-25 14:11:23,291 | INFO     | did not find any defunct processes belonging to 2042276
[2025-11-25 10:12:28] 2025-11-25 14:11:23,293 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 10:12:28] 2025-11-25 14:11:23,293 | INFO     | ready for new job
[2025-11-25 10:12:28] 2025-11-25 14:11:23,293 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 10:12:28] 2025-11-25 14:11:23,296 | INFO     | ***************************************
[2025-11-25 10:12:28] 2025-11-25 14:11:23,297 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 10:12:28] 2025-11-25 14:11:23,297 | INFO     | ***************************************
[2025-11-25 10:12:28] 2025-11-25 14:11:23,297 | INFO     | 
[2025-11-25 10:12:28] 2025-11-25 14:11:23,299 | INFO     | architecture information:
[2025-11-25 10:12:28] 2025-11-25 14:11:23,299 | INFO     | executing command: cat /etc/os-release
[2025-11-25 10:12:28] 2025-11-25 14:11:23,323 | INFO     | cat /etc/os-release:
[2025-11-25 10:12:28] NAME="CentOS Linux"
[2025-11-25 10:12:28] VERSION="7 (Core)"
[2025-11-25 10:12:28] ID="centos"
[2025-11-25 10:12:28] ID_LIKE="rhel fedora"
[2025-11-25 10:12:28] VERSION_ID="7"
[2025-11-25 10:12:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 10:12:28] ANSI_COLOR="0;31"
[2025-11-25 10:12:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 10:12:28] HOME_URL="https://www.centos.org/"
[2025-11-25 10:12:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 10:12:28] 
[2025-11-25 10:12:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 10:12:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 10:12:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 10:12:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 10:12:28] 
[2025-11-25 10:12:28] 2025-11-25 14:11:23,323 | INFO     | ***************************************
[2025-11-25 10:12:28] 2025-11-25 14:11:23,827 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-25 10:12:28] 2025-11-25 14:11:23,883 | INFO     | sufficient remaining disk space (52025098240 B)
[2025-11-25 10:12:28] 2025-11-25 14:11:23,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 10:12:28] 2025-11-25 14:11:23,884 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 10:12:28] 2025-11-25 14:11:23,884 | INFO     | update_server=False
[2025-11-25 10:12:28] 2025-11-25 14:11:23,884 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 10:12:28] 2025-11-25 14:11:23,884 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:12:28] 2025-11-25 14:11:24,063 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-25 10:12:28] 2025-11-25 14:11:24,063 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-25 10:12:28] 2025-11-25 14:11:24,063 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 10:12:28] 2025-11-25 14:11:24,063 | INFO     | will abort loop
[2025-11-25 10:12:28] 2025-11-25 14:11:24,068 | INFO     | all data control threads have been joined
[2025-11-25 10:12:28] 2025-11-25 14:11:24,402 | INFO     | all payload control threads have been joined
[2025-11-25 10:12:28] 2025-11-25 14:11:24,808 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 10:12:28] 2025-11-25 14:11:24,891 | INFO     | [job] retrieve thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:24,892 | INFO     | [job] queue monitor thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:24,989 | INFO     | all job control threads have been joined
[2025-11-25 10:12:28] 2025-11-25 14:11:24,997 | INFO     | [payload] failed_post thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:24,998 | INFO     | [payload] validate_post thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,068 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,069 | INFO     | [job] job monitor thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,074 | INFO     | [data] control thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,408 | INFO     | [payload] control thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,545 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 10:12:28] 2025-11-25 14:11:25,886 | INFO     | [data] copytool_in thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:25,995 | INFO     | [job] control thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:26,051 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:26,101 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:26,306 | INFO     | [job] validate thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:26,815 | INFO     | [data] copytool_out thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:29,568 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 10:12:28] 2025-11-25 14:11:32,437 | INFO     | [monitor] cgroup control has ended
[2025-11-25 10:12:28] 2025-11-25 14:11:34,006 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140600629860160)>', '<ExcThread(monitor, started 140600275871488)>']
[2025-11-25 10:12:28] 2025-11-25 14:11:39,032 | INFO     | all workflow threads have been joined
[2025-11-25 10:12:28] 2025-11-25 14:11:39,032 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 10:12:28] 2025-11-25 14:11:39,033 | INFO     | traces error code: 0
[2025-11-25 10:12:28] 2025-11-25 14:11:39,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 10:12:28] 2025-11-25 14:11:54,281 | INFO     | PID=2028759 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-25 10:12:28] 2025-11-25 14:11:54,282 | INFO     | .. there are 7 such processes running
[2025-11-25 10:12:28] 2025-11-25 14:11:54,282 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 10:12:28] 2025-11-25 14:11:54,282 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 10:12:28] 2025-11-25 14:11:54,283 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 10:12:28] 2025-11-25 14:11:54,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 10:12:28] 2025-11-25 14:11:54,283 | INFO     | [monitor] control thread has ended
[2025-11-25 10:12:28] 2025-11-25 14:11:54,585 [wrapper] ==== pilot stdout END ====
[2025-11-25 10:12:28] 2025-11-25 14:11:54,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 10:12:28] 2025-11-25 14:11:54,673 [wrapper] pilotpid: 2028759
[2025-11-25 10:12:28] 2025-11-25 14:11:54,715 [wrapper] Pilot exit status: 0
[2025-11-25 10:12:28] 2025-11-25 14:11:54,874 [wrapper] pandaids: 6894053089
[2025-11-25 10:12:28] 2025-11-25 14:11:54,927 [wrapper] cleanup supervisor_pilot 2803540 2028760
[2025-11-25 10:12:28] 2025-11-25 14:11:54,931 [wrapper] Test setup, not cleaning
[2025-11-25 10:12:28] 2025-11-25 14:11:54,935 [wrapper] apfmon messages muted
[2025-11-25 10:12:28] 2025-11-25 14:11:54,939 [wrapper] ==== wrapper stdout END ====
[2025-11-25 10:12:28] 2025-11-25 14:11:54,942 [wrapper] ==== wrapper stderr END ====
[2025-11-25 10:12:28]  *** Error codes and diagnostics ***
[2025-11-25 10:12:28]     "exeErrorCode": 0,
[2025-11-25 10:12:28]     "exeErrorDiag": "",
[2025-11-25 10:12:28]     "pilotErrorCode": 0,
[2025-11-25 10:12:28]     "pilotErrorDiag": "",
[2025-11-25 10:12:28]  *** Listing of results directory ***
[2025-11-25 10:12:28] total 605364
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 09:16 queuedata.json
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 09:16 pilot3.tar.gz
[2025-11-25 10:12:28] -rwx------. 1 boincer umatlas     36292 Nov 23 09:17 runpilot2-wrapper.sh
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas       100 Nov 24 23:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 10:12:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 24 23:13 run_atlas
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas       105 Nov 24 23:13 job.xml
[2025-11-25 10:12:28] -rw-r--r--. 2 boincer umatlas 307735345 Nov 24 23:13 EVNT.47523616._000002.pool.root.1
[2025-11-25 10:12:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:13 start_atlas.sh
[2025-11-25 10:12:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 24 23:13 shared
[2025-11-25 10:12:28] -rw-r--r--. 2 boincer umatlas    589956 Nov 24 23:13 input.tar.gz
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas         0 Nov 24 23:13 boinc_lockfile
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas      2611 Nov 24 23:13 pandaJob.out
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas        57 Nov 24 23:13 setup.sh.local
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas    991801 Nov 24 23:14 agis_schedconf.cvmfs.json
[2025-11-25 10:12:28] drwx------. 5 boincer umatlas      4096 Nov 24 23:14 pilot3
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas 297649836 Nov 25 09:09 HITS.47523618._000035.pool.root.1
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas       531 Nov 25 09:09 boinc_task_state.xml
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas      1054 Nov 25 09:10 memory_monitor_summary.json
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas   1516240 Nov 25 09:11 agis_ddmendpoints.agis.ALL.json
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas        95 Nov 25 09:11 pilot_heartbeat.json
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas    739685 Nov 25 09:11 log.47523618._000035.job.log.tgz.1
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas      7809 Nov 25 09:11 heartbeat.json
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas       822 Nov 25 09:11 pilotlog.txt
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas   4559597 Nov 25 09:11 log.47523618._000035.job.log.1
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas       357 Nov 25 09:11 output.list
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas       620 Nov 25 09:11 runtime_log
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas   5314560 Nov 25 09:11 result.tar.gz
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas      9338 Nov 25 09:11 runtime_log.err
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas       657 Nov 25 09:11 hPXMDma5Ph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmByKKDmN9jZon.diag
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas      6660 Nov 25 10:12 init_data.xml
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 25 10:12 boinc_mmap_file
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas        28 Nov 25 10:12 wrapper_checkpoint.txt
[2025-11-25 10:12:28] -rw-r--r--. 1 boincer umatlas     21270 Nov 25 10:12 stderr.txt
[2025-11-25 10:12:28] HITS file was successfully produced:
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas 297649836 Nov 25 09:09 shared/HITS.pool.root.1
[2025-11-25 10:12:28]  *** Contents of shared directory: ***
[2025-11-25 10:12:28] total 596992
[2025-11-25 10:12:28] -rw-r--r--. 2 boincer umatlas 307735345 Nov 24 23:13 ATLAS.root_0
[2025-11-25 10:12:28] -rw-r--r--. 2 boincer umatlas     15847 Nov 24 23:13 start_atlas.sh
[2025-11-25 10:12:28] -rw-r--r--. 2 boincer umatlas    589956 Nov 24 23:13 input.tar.gz
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas 297649836 Nov 25 09:09 HITS.pool.root.1
[2025-11-25 10:12:28] -rw-------. 1 boincer umatlas   5314560 Nov 25 09:11 result.tar.gz
10:12:30 (2017907): run_atlas exited; CPU time 90094.318750
10:12:30 (2017907): called boinc_finish(0)

</stderr_txt>
]]>

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